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16 protocols using ab108950

1

Protein Expression Analysis of MSCs

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Western blot analysis was performed according to previous description [27 (link)]. Total protein (30 μg protein per lane) from MSCs transfected with different miRNAs was subjected to SDS-PAGE and immunoblotting with the antibody against poly ADP-ribose polymerase (PARP) (46D11; CST), CD63 (ab108950; Abcam), Collagen I (14695; Proteintech), α-SMA (ab5694; Abcam), and GAPDH (KM9002T; Sungene Biotech).
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2

Isolation and Characterization of BMSC-Derived Exosomes

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For extraction of BMSC-derived exosomes, after 48 h of transfection, the supernatant was collected, centrifuged and resuspended in 200 μl PBS as described elsewhere [18 (link)]. After fixed with 2% paraformaldehyde and loaded on parafilm, the exosome samples were observed under a transmission electron microscopy (TEM; JEM-1400PLUS, Japan) at 100 KV and the nanoparticle-tracking analysis (NTA) software was used to evaluate the size of exosomes.
A BCA protein assay kit (Beyotime, China) was used to measure the protein concentration of the exosomes. The identification of exosomes was performed by Western blot assay for analysis of exosome markers CD9, CD63, CD81 and TSG101. Briefly, exosome proteins were separated by 10% SDS-PAGE, transferred onto PVDF membrane and then incubated with primary antibodies of anti-CD9 (ab92726, Abcam) and anti-CD63 (ab108950, Abcam), anti-CD81 (ab109201, Abcam) and anti-TSG101 (ab125011, Abcam) at 4 °C overnight, following with incubation of corresponding secondary antibodies at 37 °C for 45 min. Proteins were visualized on an Odyssey Infrared Imaging System (Li-Cor, Lincoln, NE). For treatment of tenocytes, the extracted exosomes (20 μg/ml) were added into the plates and the control cells were untreated.
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3

Protein Expression Analysis with Western Blotting

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Total protein was collected using Radio-Immunoprecipitation assay cell lysis buffer, and the protein concentration was determined using the BCA kit. The protein was then separated by 6% SDS-PAGE and transferred onto polyvinylidene fluoride membranes. The membranes were blocked with 5% non-fat milk at 20°C for 1 h and incubated with the primary antibodies prepared in 5% bovine serum albumin at 4°C overnight, followed by incubation with the secondary antibodies in 5% non-fat milk at 20°C for 1.5 h. After that, the membranes were soaked in enhanced chemiluminescence reagent (WBKLS0100, Millipore, Corp. Billerica, MA, USA) and then exposed for film development. The protein bands with immunoblots were analyzed, and the relative protein level was calculated based on the gray value ratio of target bands and internal references. Three independent experiments were performed. The antibodies used were TSG101 (1:2000, ab125011, Abcam, Cambridge, UK), CD9 (1:2000, ab92726, Abcam), CD63 (1:100, ab108950, Abcam), Bax (1:5000, ab32503, Abcam), Bcl-2 (1:2000, ab196495, Abcam), β-actin (1:11,000, ab6276, Abcam) and HDAC1 (1:2000, ab7028, Abcam) and HRP-labeled secondary antibodies goat anti-rabbit IgG (1:50,000, ab205718, Abcam) and goat anti-mouse IgG (1:10,000, ab205719, Abcam).
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4

Protein Extraction and Western Blot Analysis

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Total proteins were extracted using RIPA lysis buffer (Beyotime Biotechnology, Shanghai, China) and then quantified using BCA Protein Assay Kit (ThermoFisher, Shanghai, China). The protein samples were mixed with 5 × loading buffer and separated by 10% sodium dodecyl sulfate (SDS)-polyacrylamide gel electrophoresis. Next, the proteins were transferred to a polyvinylidene fluoride (PVDF) membrane, and immersed in 5.0% non-fat milk for 45 min at 37 °C. The membrane was then incubated with primary antibodies, including β-actin (1:1000, ab179467, Abcam), CD9 (1:1000, ab92726, Abcam), CD81 (1:1000, ab108950, Abcam), Bcl-2 (1:1000, ab196495, Abcam), Bax (1:1000, ab199677, Abcam), caspase-3 (1:1000, ab49822, Abcam), and SIRT7 (1:1000, ab78977, Abcam) at 4 °C overnight. Subsequently, the membrane was incubated with HRP-conjugated goat anti-rabbit IgG (1:10000, Sigma, USA) for 1 h at room temperature. Protein bands were visualized with Chemiluminescent Substrate kit. β-actin was used as the internal reference.
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5

Exosomal Protein Characterization by SDS-PAGE

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Exosomes were quantified by bicinchoninic acid (BCA) and subjected to sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE). Then, the proteins were transferred onto a polyvinylidene fluoride (PVDF) membrane, blocked with 5% skim milk, and incubated with primary antibodies (rabbit anti-rat CD9 monoclonal antibody, ab92726; mouse anti-rat CD63 monoclonal antibody, ab108950; rabbit anti-rat CD81 monoclonal antibody, ab109201; rabbit anti-rat GAPDH polyclonal antibody, ab9485; 1:1000, Abcam, UK) for 12 h at 4°C. After washing 3 times with Tris-buffered saline and Tween 20 (TBST), the membrane was incubated with horseradish peroxidase-labeled secondary antibodies (goat anti-mouse IgG, goat anti-rabbit IgG, 1:5000, Beijing Zhongshang Jinqiao Biotechnology Co., Ltd., China) for 2 h at room temperature. After washing three times with TBST, the protein bands were detected using a Kodak film developer (Fujifilm, Japan).
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Exosomal Protein Analysis by Western Blot

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For western blotting (WB) analysis, exosomes were loaded onto 10% SDS-PAGE gel after protein denaturation. 5% skimmed milk powder was used to block nonspecific binding sites after the protein was transferred onto a polyvinylidene fluoride (PVDF; Millipore) membrane. The blots were incubated with the primary antibodies, CD9 (1 : 2000; Abcam ab92726, Cambridge, MA) and CD63 (1 : 1000; Abcam ab108950), overnight at 4°C. After the membrane was washed with Tris-Buffered Saline and Tween 20, it was incubated with appropriate HRP conjugated secondary antibodies at room temperature for 1 h. The blots were visualized using an electrochemiluminescence reagent (Millipore, Bedford, MA, USA).
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7

Extracellular Vesicle Protein Profiling

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Total proteins were
extracted from the cultured cells using RIPA lysis buffer. The protein
concentration was detected by the BCA Protein Assay reagent kit (Thermo
Fisher Scientific, Waltham, MA). The cell protein samples were separated
by sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE)
in 10% polyacrylamide gels and transferred to polyvinylidene difluoride
membranes. Then, nonspecific binding was blocked by 5% nonfat milk
in trisbuffered saline with Tween-20 (P9416; Sigma-Aldrich) for 1
h at room temperature. Membranes were incubated with primary antibodies,
including anti-CD63 (ab108950; Abcam), anti-Alix (ab117600; Abcam),
and anti-CD81 (ab79559; Abcam), for overnight at 4 °C. Membranes
were incubated with horseradish peroxidase (HRP)-conjugated secondary
antibodies for 1 h at 25 °C before incubating with the enhanced
chemiluminescence (ECL) reagent (Thermo-Pierce, Rockford, IL). The
protein levels were quantitated after normalization to β-actin.
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8

Exosomal Protein Analysis by Western Blot

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Exos from the cell supernatant were prepared by lysis in RIPA lysis buffer with proteinase inhibitor (Promega, Madison, WI, USA). The total protein level in each sample was measured using a BCA assay kit (Pierce Biotechnology, Inc., Rockford, IL, USA). The same quantity of proteins from each sample were separated by 10% SDS-PAGE and transferred to polyvinylidene fluoride membranes (Millipore, Billerica, MA, USA). The membranes were blocked with 5% nonfat milk solution in Tris-buffered saline containing 0.05% Tween 20 (TBST) (0.1% Tween 20), and then incubated with antibodies for mouse anti-CD63 (1:1,000; ab108950, Abcam), mouse anti-Sox9 (1:1,000; ab185230, Abcam), and glyceraldehyde-3-phosphate dehydrogenase (GAPDH) (1:1,000; ab9482, Abcam) for 12 hours at 4°C. The membranes were washed and incubated with horseradish peroxidase-conjugated goat–antimouse IgG (Santa Cruz Biotechnology, Inc., Dallas, TX, USA) for 2 hours. Protein bands were detected using enhanced chemiluminescence reagent (Thermo Fisher Scientific, Waltham, MA, USA) and visualized via a ChemiDoc MP system (Bio-Rad, Hercules, CA, USA).
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9

Exosome Isolation from Tenocyte-Derived Stem Cells

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To extract exosomes, after culture of TDSCs for 48 h, culture medium collected from 150 cm2 dishes was centrifuged at 300 × g for 20 min, 2000 × g for 10 min, and 10,000 × g for 60 min at 4°C. The supernatant was filtered with a 0.22 μm filter (Merck-Millipore, MA, USA), ultracentrifuged at 100,000 × g for 1 h at 4°C, and resuspended in 200 μl phosphate-buffered saline. The morphology of isolated exosomes was assessed by transmission electron microscopy (TEM), and their size was measured using NanoSight viewer (Malvern Instruments, Malvern, UK). The concentration of exosomes (i.e., the protein concentration in exosomes) was measured using a BCA Protein Kit (#P0009; Beyotime, Shanghai, China). Western blotting with primary antibodies against the exosome markers TSG101 (ab125011), CD81 (ab109201), CD63 (ab108950), and CD9 (#ab92726, all from Abcam) was performed. Extracted exosomes (20 μg/ml) were added to the culture for treatment of tenocytes. The design of the procedures is shown in Figure 1(a).
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10

Quantitative Protein Analysis in Myocardial Tissue

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All proteins from cells or myocardial tissue were extracted and quantified. Micro BCA™ Protein Assay Kits (Thermo Fisher Scientific, Waltham, MA) were used to quantify protein levels. Equivalent amounts of protein was electrophoresed through 12% SDS-PAGE (stacking gel, 70 V; separating gel, 110 V) and transferred to nitrocellulose membranes (200 mA, 50 min). Blots were incubated for 1 h at room temperature with the indicated antibodies (CD63: ab108950, 1:1000, Abcam, CA, USA; TSG101: ab125011, 1:5000, Abcam; Cleaved-Caspase-3: ab2302, 1:500, Abcam; Bcl-2: ab 196,495, 1:1000, Abcam; Bad: ab32445, 1:5000, Abcam; Bax: ab32503, 1:5000, Abcam), and then incubated with goat-anti-rabbit/mouse HRP-linked secondary antibody (Abcam, Cambridge, MA, USA). Chemiluminescence substrate (Pierce Chemical, Rockford, IL, USA) was used to visualize protein signals. The intensity of the protein bands was analyzed by ImageJ software (NIH, USA).
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