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6 protocols using ab39716

1

Western Blot and IHC Protocol

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Western blotting and immunohistochemistry were performed according to standard procedures50 (link). The following antibodies were used: anti-HBX (ab39716, Abcam, Cambridge, MA, USA), anti-P-CHK2 (2197S, Cell Signaling Technology, Danvers, MA, USA), anti-CHK2 (ab47433, Abcam), anti-ATM (ab199726, Abcam), anti-P21 (ab7960, Abcam), anti-P53 (BS1913, Bioworld, Minnesota, USA), anti-γH2AX (ab26350, Abcam), anti-P-CHK1 (2348S, Cell Signaling Technology), anti-CHK1 (10362-1-AP, Proteintech), anti-CDK2 (SC-6248, Santa Cruz Biotechnology, CA, USA), anti-Cyclin D1 (SC-718, Santa Cruz Biotechnology), anti-GAPDH (SC-47724, Santa Cruz Biotechnology), HRP-Ms (#7074, Cell Signaling Technology), and HRP-Rb (#7076, Cell Signaling Technology).
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2

Quantitative Fluorescent IHC Analysis

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Fluorescent IHC staining was performed as described23 (link). Briefly, the frozen liver tissues from each treatment group of mice were sectioned and incubated with the primary antibodies anti-PPARγ (2435; Cell Signaling Technology), anti-HBsAg (1811; ViroStat, Portland, ME, USA), anti-HBx (ab39716; Abcam), or anti-CD45 (ab10558; Abcam), followed by the secondary antibody Alexa Fluor 488-conjugated goat anti-rabbit IgG (ab150077; Abcam). Anti-HBsAg was used to detect pre-S2 mutant. DAPI (4’, 6-diamidino-2-phenylindole; Invitrogen) was used to stain the nuclei. For quantification, five independent microscopic fields (original magnification, ×40) with the most abundant nuclear PPARγ-, CD45-, pre-S2 mutant-, or HBx-positive cells in liver tissues of each mouse were selected. The total number of nuclear PPARγ-, CD45-, pre-S2 mutant-, or HBx-positive cells in the five selected fields of each mouse was counted manually and further calculated as the number of nuclear PPARγ-, CD45-, pre-S2 mutant-, or HBx-positive cells per field for statistical analysis.
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3

Rat Liver Protein Extraction and Western Blot

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The total protein was extracted from the biopsy tissue of the rat liver using the RIPA Lysis Buffer (Beyotime, P0013B, CN) according to the manufacturer’s instructions. The protein lysates were separated by 10% sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) (Epizyme Biomedical Technology, PG112, CN) and then electrophoretically transferred onto the polyvinylidene fluoride membranes (Epizyme Biomedical Technology, WJ001, CN). The primary antibodies we used were rabbit anti-HBx (ABCAM, ab39716, 1:1000, United States); mouse anti-GAPDH (MBL, M171-3, 1:5000, JPN). The ImageJ software was used to analyze the integrated density of the protein bands.
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4

Antibody Characterization for HBV Analysis

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A rabbit anti-core antibody [36 (link), 67 (link)] (1:2000) was used for Western blot analysis, Phos-tag SDS-PAGE, native agarose gel electrophoresis (NAGE) (1:5000), and immunofluorescence analysis (IFA) (1:200). A rabbit anti-HBx antibody (Abcam, ab39716) (1:2000) was used for Western blot analysis of HBx protein. A goat anti-HBs antibody (B0560, Dako) (1:5000) was used for detecting HBs by NAGE. A mouse α-tubulin antibody (DM1A) (Genetex, GTX11302) (1:2000) was used for Western blot analysis. A mouse HA-tag antibody (Genetex, GTX115044) (1:1000) was used for immunoprecipitation assay (2 µg) and Western blot analysis. A mouse anti-Flag M2 antibody (Sigma, F1804) (1:2000) was used for immunoprecipitation assay (2 µg) and Western blot analysis.
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5

Antibody validation for Western blot, RIP, and IHC

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The following antibodies were used in this study: primary antibodies against HBx (ab39716, dilution at 1 : 500 for Western blot analysis; 1 : 100 for RNA immunoprecipitation (RIP) assay; 1 : 200 for immunohistochemistry (IHC); Abcam, Cambridge, UK), XB130 (#12684, dilution at 1 : 1000 for Western blot analysis; 1 : 50 for RIP; 1 : 100 for IHC; Cell Signaling Technology, Boston, MA, USA), PI3K (ab32089, 1 : 1200, Abcam), phosphorylated- (p-) PI3K (ab278545, 1 : 1500, Abcam), AKT (#9272, 1 : 1000, Cell Signaling Technology), p-AKT (Ser473) (#4060, 1 : 2000, Cell Signaling Technology), and β-actin (sc-47778; 1 : 500, Santa Cruz Biotechnology Inc., Santa Cruz, CA, USA) as well as a secondary antibody (ab205718, 1 : 10,000, Abcam).
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6

Western Blot Analysis of Protein Expression

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Cells and tissues were lysed and sonicated in cold RIPA buffer (Beyotime, Shanghai, China) and tissue lysis both with protease inhibitor cocktail (Thermo Fisher Scientific, Carlsbad, CA, USA), respectively. Lysates were centrifuged at 4 °C for 15 min at 12,000 rpm, supernatant was collected, and the protein concentration was determined using a bicinchoninic acid (BCA) Protein Assay Kit (Invitrogen, Waltham, MA, USA). Equal amounts of proteins were run on 10–15% sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) and transferred to 0.22 μm polyvinylidene difluoride (PVDF) membranes (Merck Millipore, Tullgren, Carrigtwohill, Co., Cork, Ireland). Then, the PVDF membranes were blocked using 5% nonfat milk at RT for 2 h and incubated with primary antibody (FXR, A9033A, R&D; GAPDH, BM1985, BOSTER; ab39716, Abcam; Bcl-2, 40639, SAB; cleaved caspase-3, 29034, SAB) at 4 °C overnight. Subsequently, after probing with HRP-conjugated secondary antibodies for 2 h at RT, protein bands were detected with SuperSignal West Pico PLUS chemiluminescence substrate (Invitrogen, Waltham, MA, USA).
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