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10 protocols using sorvall mtx 150

1

Exosome Isolation from Cell Culture

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Exosomes were isolated from cell culture conditioned supernatants using the protocol published by Lobb et al. [50 (link)]. Conditioned culture media were harvested from adipocytes and centrifuged at 300× g at 4 °C for 10 min to remove detached cells. Then, supernatants were filtered through 0.22 µm filters (Merck Millipore, Darmstadt, Germany) to remove contaminating apoptotic bodies, microvesicles and cell debris. Clarified conditioned culture media were then centrifuged in a SorvallTM MTX 150 micro-ultracentrifuge (Thermo Scientific, Waltham, MA, USA) at 100,000× g at 4 °C for 90 min to pellet exosomes. The supernatants were carefully removed, and pellets containing exosomes were resuspended in 1 mL of ice-cold PBS. A second round of ultracentrifugation under the same condition was carried out, and the resulting exosome pellets resuspended in 200 µL of PBS.
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2

Exosome Isolation from Cell Culture Supernatants

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Exosomes were isolated from cell culture conditioned supernatants using the protocol published by Lobb et al. [37 (link)]. Conditioned culture media were harvested from adipocytes and centrifuged at 300× g at 4 °C for 10 min to remove detached cells. Then, supernatants were filtered through 0.22 µm filters (Merck Millipore, Darmstadt, Germany) to remove contaminating apoptotic bodies, microvesicles and cell debris. Clarified conditioned culture media were then centrifuged in a SorvallTM MTX 150 micro-ultracentrifuge (Thermo Scientific) at 100,000× g at 4 °C for 90 min to pellet exosomes. The supernatant was carefully removed, and pellets containing exosomes were resuspended in 1 mL of ice-cold PBS. A second round of ultracentrifugation under the same condition was carried out, and the resulting exosome pellet resuspended in 200 µL of PBS.
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3

Inactivated Virus Chimeric Vaccine Production

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The novel rescued virus chimeric bivalent 5 + 3 and WT 5 + 3 were propagated in 10-day-old SPF embryonated chicken eggs. MERS-CoV was grown in Vero-E6 cells. The collected harvest for each virus was clear up from cell debris by centrifugation at 800× g for 5 min. Harvested viruses were inactivated using 0.1% formaldehyde and mixed well for 24 h at 4 °C. Inactivated viral particles were pelleted by careful layering of 30 mL of inactivated virus onto 12 mL of 20% sucrose in a centrifuge tube and then centrifuged in ultracentrifuge Sorvall MTX 150 (Thermo, Waltham, MA, USA) at 28,000 rpm at 4 °C for 2 h. The pellets were suspended in 500 µL 1× PBS and virus titers were measured by HA assay. Total Protein was measured using NanoDrop 2000 (Thermo Fisher Scientific, Waltham, MA, USA). Equal protein content of each inactivated virus was mixed with alum adjuvant 1:1 (v/v) for 30 min then these suspensions were used for immunization.
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4

Exosomal Fractionation Protocol

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To collect the exosomal fraction, we carried out fractionation using an ultracentrifuge (Sorvall MTX150, Thermo Scientific, Waltham, MA, USA) according to general methods for the exosomal fractionation [66] . Briefly, the culture medium, supplemented with exosomal free FBS, 24 hours after medium change was collected and centrifuged at 3,000×g for 10 min at 4°C. The supernatant was carefully transferred into a new tube and centrifuged at 10,000×g for 20 min at 4°C. The resulting supernatant was the carefully transferred into a new tube for ultracentrifuge and centrifuged at 100,000×g for 90 min at 4°C. The supernatant was carefully removed and pellet was re-suspended with sample buffer for western blotting and used as the exosomal fraction.
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5

Liposomal Encapsulation Efficiency Assay

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The encapsulation efficiency was determined by using ultracentrifugation method. Briefly, the liposomal solutions were centrifuged at 155,000 G for an hour using a benchtop Sorvall MTX 150 ultracentrifuge (Thermo Scientific, USA). The liposomal pellet obtained was broken using 1% Triton X-100 and ranibizumab was detected using ELISA (Enzyme-linked immunosorbent assay, SuperSignal® ELISA Pico Chemiluminescent Substrate 250 ml Kit) (see Section 2.6).
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6

SARS-CoV-2 Isolate Propagation and Inactivation

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SARS-CoV-2 isolate (hCoV-19/Egypt/NRC-03/2020) with accession number EPI_ISL_430820 (available at https://www.gisaid.org/, accessed on 1 August 2021) was propagated at Vero-E6 cells (ATCC, CRL-1586) in T-175 flask with DMEM media containing 1% fetal bovine serum, 100 U/mL penicillin and 100 μg/mL streptomycin (GIBCO) at 37 °C in 5% CO2. The cell culture supernatant after 5 days post infection was been harvested and centrifuged at 1800× g for 10 min to remove cell debris.
Inactivation of cell culture clarified harvest using β-propiolactone 0.1% v/v in a shaking incubator for 48 h at 4 °C. A total 15 mL inactivated batch mixed with 6 mL sucrose 20% then ultracentrifuged at 50,000 rpm/min for 1 h at 4 °C (Sorvall MTX 150, Thermo Fisher Scientific, Waltham, MA, USA) then eluted in 1 mL 1× PBS. The protein content was measured using PierceTM BCA Protein Assay kit (Thermo) following the manufacturer’s instructions.
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7

Exosome Isolation and Characterization

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Exosomes were isolated using a multi-step process. Large vesicles were eliminated by sequential centrifugation up to 50,000g as described12 (link). The remaining particles were pelleted by ultracentrifugation (Sorvall mTx 150, Thermo Scientific, Springfield, NJ) at 100,000g for 18 h. Vesicles expressing CD63 were immunoselected using CD63 magnetic bead isolation. The recovered particle size was verified by nanoparticle tracking analysis (NTA) using a NanoSight NS300 instrument (Amesbury, UK) as described11 (link). The data were analyzed with the NTA software (NANOSight version 2.3) using dilutions with deionized water. Three videos at a minimum of 200 completed tracks were collected at 30-s time intervals/video per sample.
Exosomes were further distinguished by flow cytometry with magnetic beads coupled to anti-CD9-PE, anti-CD63-FITC and anti-ALIX-APC (BD Biosciences).
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8

Enrichment of Virus-like Particles from Fecal Samples

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Virus-like particles were enriched from the fecal samples according to the previously described protocol with minor modifications (edited by Andrés Moya 2018 ). The procedure of VLPs enrichment was performed on ice. One hundred milligrams of fecal sample was suspended in 1 ml HBSS buffer (137 mM NaCl, 5.4 mM KCl, 1.3 mM CaCl2, 0.3 mM Na2HPO4·2H2O, 0.5 mM MgCl2·7H2O, 0.4 mM KH2PO4, 0.6 mM MgSO4·7H2O, 4.2 mM NaHCO3, 5.6 mM D-glucose). Stool suspensions were then cleared by centrifuged twice at 10,000 g for 2 min in 8 °C to remove debris and cells. Supernatants were passed through 0.45-µm followed by 0.22-µm filters to further remove residual host and bacterial cells. The sterile filtrate was mixed with the equal volume of HBSS buffer and centrifugated at 750,000 g (Sorvall mTX150, Thermo Scientific) for 1 h. Any remaining nucleic acid in centrifugal precipitation that was not encapsulated was degraded by treating with a mixture of 2.4 μl TURBO DNase (4.8 U, Invitrogen), 8 μl RNase A/T1 Mix (16 μg RNase A, 40 U RNase T1, Thermo Scientific), and 1 μl Benzonase (5 U, EMD Millipore) followed by heat inactivation of nuclease at 65°C for 10 min. The enriched virus-like particles were used for DNA and RNA extraction immediately.
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9

Isolation and Characterization of Exosomes

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Exosomes were isolated using a multi-step process. First, large particles were removed by sequential centrifugation up to 50,000 g (Lim et al., 2011 (link)). The remaining particles were pelleted by ultracentrifugation (Sorvall mTx 150, Thermo Fisher Scientific, Springfield, NJ) at 100,000 g for 18 h. The recovered vesicles were analyzed for tetraspaninins (CD63 and CD81) by western blot and flow cytometry. The latter method used CD63 magnetic bead isolation. The exosomes were captured onto the beads and then labeled with CD63-FITC and anti-CD81-APC (BD Biosciences).
The recovered particle size was verified by Nanoparticle tracking analysis (NTA) using a NanoSight NS300 instrument (Amesbury, United Kingdom) as described (Bliss et al., 2016 (link)). The data were analyzed with the NTA software (NANOSight version 2.3) using dilutions with deionized water.
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10

Preparation of MRP-Loaded Liposomes

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MRPL was prepared by the thin-film ultrasonic method described by Isailović et al. [16 (link)] with moderate modification. In brief, 1 g of soybean lecithin and 0.2 g of ultra-pure cholesterol were dissolved in 100 mL of chloroform, and 4 mg of MRPs was mixed subsequently. The mixture was transferred into a 250 mL round flask to completely remove the chloroform, using a R-3 rotary vacuum evaporator (rotate at 100 rpm) (Buchi Laboratory Equipment Trading Co., Ltd., Shanghai, China) at 37 °C. After the thin lipid film was formed, 100 mL of distilled water was added to hydrate with the lipid film by rotating for 30 min at 200 rpm in a 37 °C water-bath. After that, the solution was treated with ultrasound (JY92-IIN, biotechnology Co., Ltd., Ningbo, China) at 400 W for 4 min with 3 s pulse-on and 3 s pulse-off in an ice-bath to transform liposomes from MLV to UV, and then successively filtered through 0.45 μm and 0.22 μm water microfiltration membranes to obtain MRPL suspension [12 (link),18 (link)]. The suspension was centrifugated at 45,000 rpm for 30 min at 4 °C using a Sorvall MTX 150 ultracentrifuge (Thermo Fisher Scientific Inc., Waltham, MA, USA) to collected MRPL precipitate and to remove the unencapsulated MRPs; the encapsulation rate of MRPs was 49% ± 2.6%.
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