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3 protocols using anti mouse igg h l alexa fluor 568

1

Immunofluorescence Staining of Neural Tissues

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Tissues intended for immunofluorescence (IF) were fixed with 4% paraformaldehyde and prepared for staining as described previously.11 All antibodies were diluted as listed below in antibody diluent (Agilent Dako S0809) with incubation overnight at 4°C. Anti‐GALT primary antibody (Novus Biologicals #4C11) was used at a 1:100 dilution; anti‐NeuN (Cell Signaling #2430716) and anti‐GFAP (Invitrogen #PA5‐1629117) were each used at a 1:1800 dilution. The secondary antibodies used were: anti‐Mouse IgG (H + L) Alexa Fluor 568 (Abcam 175 473) and anti‐Rabbit IgG (H + L) Alexa Fluor 488 (Cell Signaling #4412), each used at 1:500 dilution in antibody diluent with incubation for 1 hour at room temperature. All slides were treated with 300 μM DAPI (Invitrogen #D1306) and mounted with ProLong Diamond Antifade Mountant (Life Technologies #P36970) for 24‐hours at room temperature prior to imaging. Staining for Purkinje cells using anti‐calbindin‐E‐28K (KD‐15) antibody (Millipore Sigma, #C735418) was performed as described previously.19
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2

Colocalization Analysis of Mitochondria and Protein Markers

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Cells (5 × 104 cells) were grown on a sterilized confocal dish (Coverglass-Bottom Dish, SPL. Cat#100350) for 24 h. Cells were incubated with Mitotracker (Invitrogen, #M22426) for 30 min and fixed with 4% formaldehyde for 30 min. These cells were then washed with PBS twice and incubated with TRIP-Br1 (Enzo Life Sciences, ALX-804-645) or LC3 (Cell Signaling Technology, #2775S) antibodies overnight at 4°C. These primary antibodies were detected with an anti-mouse IgG H&L (Alexa Fluor® 568) (Abcam, #ab175473) or an anti-rabbit IgG H&L (Alexa Fluor® 488) (Abcam, #ab150077). Nuclei were stained with DAPI (Invitrogen, Cat#P36931) for 10 min after washing with PBS. Colocalization between fluorophores was analyzed using ImageJ software (ver. 1.51u; National Institutes of Health, USA). For lysosomal confocal imaging, cells were incubated with 100 nM Lysotracker (Invitrogen, Cat# L12492) in a phenol-free medium for 90 min. Confocal images were obtained using a Zeiss confocal microscope (Nikon A1 confocal). Image manipulation and merging were performed using appropriate tools of the ImageJ software.
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3

Immunofluorescence Staining of Brain Tissues

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Tissues intended for immunofluorescence were fixed with 4% paraformaldehyde and prepared for staining as described previously (Rasmussen et al 2021 (link)). All antibodies were diluted as listed below in antibody diluent (Agilent Dako S0809) with incubation overnight at 4°C. Anti-GALT primary antibody (Novus Biologicals #4C11) was used at a 1:100 dilution; anti-NeuN (Cell Signaling #24307; (Mullen et al 1992 (link))) and anti-GFAP (Invitrogen #PA5-16291; (Jacque et al 1978 (link))) were each used at a 1:1800 dilution. The secondary antibodies used were: anti-Mouse IgG (H+L) Alexa Fluor 568 (Abcam 175473) and anti-Rabbit IgG (H+L) Alexa Fluor 488 (Cell Signaling #4412), each used at 1:500 dilution in antibody diluent with incubation for one hour at room temperature. All slides were treated with 300 μM DAPI (Invitrogen #D1306) and mounted with ProLong Diamond Antifade Mountant (Life Technologies #P36970) for 24-hours at room temperature prior to imaging. Staining for Purkinje cells using anti-calbindin-E-28K (KD-15) antibody (Millipore Sigma, #C7354; (Park et al 2019 (link))) was performed as described previously (Reith et al 2011 (link)).
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