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Sulforhodamine b

Manufactured by Thermo Fisher Scientific
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Sulforhodamine B is a fluorescent dye commonly used in biochemical research applications. It is a red-orange dye that exhibits strong fluorescence when bound to proteins. Sulforhodamine B is often utilized in cell-based assays for the quantitative determination of cell proliferation and cytotoxicity.

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14 protocols using sulforhodamine b

1

Cytotoxicity Evaluation of Proteasome Inhibitors

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Optimal seeding concentrations were determined for the four cell lines, in which the cells would proliferate at a consistent rate achieving a high number of cells in the final 72-hour time point. In the next step, two PIs, bortezomib (Velcade, PS-341) and carfilzomib (Kyprolis, PR-171) were used for the treatment of the four cell lines. Cell viability together with the inhibitor-induced cytotoxicity were assessed in 24, 48, and 72 hours by the Sulforhodamine B assay, using Sulforhodamine B (Invitrogen, Thermo Fisher Scientific), and the Trypan blue exclusion assay, using 0.4% (w/v) Trypan blue solution (Sigma-Aldrich, Merck). The IC50 value, which represents the half-maximal inhibitory concentration of each inhibitor, was determined for each combination of cell line and PI, after performing a wide-range screening of PIs concentrations between 1 and 100 nM. Apoptosis was assessed by the Caspase-3 activity colorimetric assay, following the manufacturer’s instructions (Elabscience, USA). Cell images were obtained with a Carl Zeiss Axio Vert.A1 Inverted Microscope (Carl Zeiss, Germany).
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2

TPLSM Imaging of Bladder Tissue

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For TPLSM imaging, samples were prepared either label-free, visualizing AF controls, or with a dye, visualizing cell nuclei with SYTO 13 (Life Technologies Europe BV, Bleiswijk, NL) and elastin with sulforhodamine B (Life Technologies Europe BV). sulforhodamine B was diluted in HBSS (Life Technologies Europe BV) without phenol red, to a final concentration of 5 μM; SYTO 13 was diluted in PBS (B.Braun, Melsungen, Germany) to a final concentration of 2.5 μM. After removing excess saline solution to avoid further dilution of the marker, sulforhodamine B and SYTO 13, respectively, were added to the living, fresh bladder sample and each of the agents was incubated for 30 min at 4 °C. During imaging, tissue was submerged under physiological saline solution.
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3

Macrophage Interactions with Candida albicans

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Experiments were carried out using mouse RAW 264.7 macrophages (ATCC). RAW cells were plated sparsely in 12-well tissue culture plates (Corning Inc.) and grown overnight at 37°C in an air-CO2 (19:1) environment in RPMI 1640 (Wisent Inc.) supplemented with 5% (vol/vol) fetal bovine serum (FBS). The C. albicans wild-type strain was the prototrophic strain BWP17/CIp30 (53 (link)). Other strains used are listed in Table S2 in the supplemental material. C. albicans cultures were grown in YPD medium (1% yeast extract, 2% peptone, 2% dextrose) at 30°C overnight. Cultures were washed in sterile phosphate-buffered saline (PBS) and adjusted to the required cell density. Concanavalin A labeled with FITC and sulforhodamine B were from Invitrogen. Nigericin, monensin, and Gly-Phe-β-naphthylamide were from Sigma. Concanamycin A was from Abcam. Recombinant pneumolysin was a kind gift from John Brumell.
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4

CNT-DOX Nanocarrier for Cancer Therapy

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Single-walled CNTs (purity 0.90%) were purchased from Shenzhen Nanotech Port (Shenzhen, People’s Republic of China). DOX (production date: 2014/05/11, purity >98%) was obtained from Beijing Yi-He Biotech Co. Ltd. 1-MA, distearoyl-sn-glycero-3-phosphoethanolamine-PEG (DSPE-PEG), and dimethyl sulfoxide were obtained from Sigma-Aldrich Co. LLC. Sulforhodamine B, Dulbecco’s Modified Eagle’s Medium (DMEM) cell culture medium, penicillin, streptomycin, fetal bovine serum (FBS), and heparin sodium were bought from Gibco Invitrogen. DAPI and hematoxylin and eosin (H&E) were supplied by Beyotime Biotechnology Co. Ltd. Other reagents were acquired from China National Medicine Corporation Ltd. Also, 808 nm laser (diode laser, 2 W/cm2, CW) was supplied by Changchun Laser Research Center. The dialysis bags (MWCO =10,000) were obtained from Spectrum Laboratories Inc.
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5

Lipid and Metabolite Analysis in Cells

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Dulbecco’s modified Eagle’s medium (DMEM), penicillin, streptomycin, fetal bovine serum (FBS) and Trypsin were purchased from Gibco-Invitrogen (Grand Island, NY, USA). Dithiothreitol (DTT), phenylmethanesulfonyl fluoride (PMSF), protease inhibitor cocktail (leupeptin, antipain, chymostatin, and pepstatin A), sulforhodamine B (SRB), palmitic acid (C16:0), stearic acid (C18:0), oleic acid (C18:1), linoleic acid (C18:2), arachidonic acid (C20:4), D(-)-Fructose, Nile Red, Hoechst 33342, tetramethylrhodamine methyl ester (TMRM), and 5-(and-6)-chloromethyl-2′,7′-dichlorodihydrofluorescein diacetate, acetyl ester (CM-H2DCFDA) were purchased from Invitrogen (Eugene, OR, USA).
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6

Lipid Composition and Preparation

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The lipid molecules used in the present study are 1,2-dioleoyl-sn-glycero-3-phospho-L-serine (DOPS), 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine (POPC), phosphatidylinositol-4,5-bisphosphate (PIP2, from porcine brain), cholesterol, and 1,2-dipalmitoyl-sn-glycero-3-phosphoethanolamin-N-(biotinyl) (biotin-DPPE). All lipids were obtained from Avanti Polar Lipids. 1,1′-Dioctadecyl-3,3,3′,3′-tetramethylindocarbocyanine perchlorate (DiI), 1,1′-dioctadecyl-3,3,3′,3′-tetramethylindodicarbocyanine perchlorate (DiD), and sulforhodamine B were obtained from Invitrogen. The desired amounts of lipids were mixed in a glass tube. The mixture was first dried under the nitrogen flow to form a thin lipid film on the well of tube and then completely dried under vacuum.
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7

Dye Diffusion in Whole-Cell Recordings

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We analyzed the diffusion of the gap-junction channel-permeable dyes LY (see above) and sulforhodamine-B, dialyzed in whole-cell configuration in current clamp (zero current) mode. The patch pipettes were filled with ICS described above and containing 2 mM of LY or sulforhodamine-B. LY (Sigma-Aldrich, MW 457.25), is a green- to yellow-fluorescent negatively charged (-2 charges) dye, while sulforhodamine-B (Molecular Probes, MW 558.66) is an orange- to red-fluorescent non-charged water-soluble (polar) sulfonic acid tracer with strong absorption and good photostability [63] (link), [72] (link), [73] (link), [74] (link), [75] (link).
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8

Imaging Exocytosis in Pancreatic Islets

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Exocytosis was visualized by using a fluid-phase tracer, sulforhodamine B (0.7 mM; Molecular Probes, Carlsbad, CA, USA) in an assay solution (140 mM NaCl, 5 mM KCl, 2 mM CaCl2, 1 mM MgCl2, and 10 mM HEPES-NaOH) containing 2.8 mM (low) or 20 mM (high) glucose with two-photon excitation imaging. The islets were imaged with an inverted microscope (IX70; Olympus, Tokyo, Japan) and a laser-scanning microscope (FluoView; Olympus) equipped with a water-immersion objective lens (UplanApo60xW/IR; NA, 1.2), as previously described (Kasai et al., 2005 (link)). Two-photon excitation was performed at 830 nm, and the fluorescence signals of the Ca2+ indicator fura-2 (Kd: ∼200 nM) and the polar tracer sulforhodamine B were separated by a dichroic filter and captured at 420–560 and 570–650 nm, respectively, and images were acquired every 1 sec. In an individual, 4,500–5,500 µm2 region of interest in islets containing approximately 40–60 cells, we analyzed abruptly appearing small fluorescent spots on the plasma membrane, which were recorded as “exocytic events”.
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9

Elastic Microfibril Visualization in Ocular Tissues

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To identify elastic microfibrils, elastin staining was performed using a Verhoeff van Gieson Elastic Stain Kit (Cat# HT25A, Sigma) in whole eye cross-sections according to the manufacturer’s protocol. Images were captured and analyzed (KEYENCE microscope).
For two-photon imaging, ex vivo mouse eyes were labeled intact, without dissection or sectioning, with Sulforhodamine-B (Thermo Fisher Scientific), a water soluble stain of elastic microfibrils. Microscopy was performed on a Leica SP5 microscope (Leica Microsystems, Heidelberg, Germany) coupled to a Chameleon Ultra-II multiphoton laser (Coherent, Santa Clara, CA) through inverted 20X/0.7NA or 63X/1.3NA objectives. We used 850 nm excitation, pulsed, and focused through green (525/50 nm) or red (585/40 nm) filters (Chroma, Bellows Falls, VT) onto a non-descanned photomultiplier tube detector (Hamamatsu, Bridgewater, NJ). Images were collected as multiple channel z-stacks using 512 × 512 or 1024 × 1024 pixel frames, 16-bit grayscale resolution, and 16X line averaging using 1–8 μm step sizes. Images were viewed and processed on LAS AF and AF Lite 2.2.1 (Leica), Image J (NIH; Bethesda, MD), Photoshop CS5 (Adobe, San Jose, CA) and Imaris (Oxford Instruments). Methods reported here have previously been described101 (link), 106 (link)–108 (link).
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10

Fluorescent Labeling of Cysteine Peptides

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H-Cys-2-ClTrt, Fmoc amino acids and amide coupling reagents were purchased from Novabiochem (La Jolla, CA). Solvents were obtained from Sigma Aldrich (St. Louis, MO). RPMI and phosphate buffered saline (PBS) were purchased from Invitrogen (Eugene, OR). Bodipy FL NHS ester reagent, sulforhodamine B, and all other reagents were acquired from ThermoFischer Scientific (Waltham, MA).
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