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Lucifer yellow ch dilithium salt

Manufactured by Merck Group
Sourced in United States, Germany

Lucifer Yellow CH dilithium salt is a fluorescent dye used in biological research. It is a water-soluble derivative of lucifer yellow that can be used as a marker or tracer in various applications, such as cell biology and neuroscience studies. The core function of this product is to provide a fluorescent label for the visualization and tracking of cellular structures or molecules of interest.

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19 protocols using lucifer yellow ch dilithium salt

1

Evaluating Epithelial Barrier Function

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Transepithelial resistance (TEER) was measured with an EVOM2 Volt/Ohm meter using STX2 electrodes (World Precision Instruments, Sarasota, United States). To assure the electrodes were fully submerged in medium, the media volumes were adapted to 100 μL apical and 700 μL basolateral before the first TEER measurements were performed. The TEER values after BA exposure were expressed as percentage of the TEER value measured just before BA exposure. After 24 h of BA exposure, culture inserts were washed twice with PBS and transferred to a new 24-wells plate. Lucifer Yellow CH dilithium salt (L0259, Sigma) was dissolved in phenol red-free medium (Gibco) to 1 mg/mL and 100 μL was added to the apical compartment. In the basolateral compartment, 700 μL phenol red-free DMEM was added and afterwards the plate was incubated at 37 ​°C/5% CO2 for 3 h. Subsequently, 100 μL of the basolateral compartment was collected and fluorescence was measured at 425/515 nm (excitation/emission). An empty cell culture insert served as a control for complete paracellular permeability.
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2

Investigating Cell Adhesion Molecules

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ZCL278 was purchased from Tocris and diluted in DMSO at 50 mM. ICAM-1 recombinant protein (#ADP4-050), and fibronectin isolated from human plasma (1918-FN-02M) were purchased from R&D Systems. The type I solution of rat collagen, Lucifer Yellow CH dilithium salt, Resveratrol, and Lithium Chloride were purchased from Sigma-Merck. The recombinant human CCL2/MCP-1 Protein was obtained from R&D Systems and Miltenyi Biotec.
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3

Intracellular Staining of Insect Brains

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For intracellular staining, brains were dissected in bee physiological saline solution (NaCl (130 mM), KCl (6 mM), MgCl2 (4 mM), CaCl2 (5 mM), glucose (25 mM), sucrose (170 mM) adjusted to pH 6.7 using diluted HCL) and fixed overnight at 4°C in 4% paraformaldehyde (PFA, Roth, Karlsruhe, Germany) in 0.1 M phosphate-buffered saline saline (PBS; NaCl (37 mM), KCl (2.7 mM), Na2HPo4 (8 mM), KH2Po4 (1.4 mM), adjusted to pH 6.7 using diluted HCL). Brains were washed three times in PBS for 10 min. If neurons were filled with Neurobiotin, brains were preincubated at room temperature for 2 h in 0.3% Triton X (Sigma-Aldrich, München, Germany) in PBS and incubated over night at 4°C in Streptavidin-Cy5 (Dianova, Hamburg, Germany) and sodium azide (0.005%). Lucifer Yellow (Lucifer Yellow CH dilithium salt, Sigma-Aldrich, München, Germany, 1:100 in PBS, respectively) was added for neuropil staining. On the next day, the brains were washed in PBS (for 15, 30, and 45 min) before they were dehydrated in an ascending ethanol series (each 10 min in 50, 70, 90, 99, and 100% ethanol). Subsequently the brains were cleared and mounted in methyl salicylate (Roth, Karlsruhe, Germany).
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4

Quantifying Cell Permeability with Lucifer Yellow

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A fluorophore, Lucifer Yellow CH dilithium salt (LY, 457.25 Da, L0259, λex/em 480/520 nm; Sigma), absorption by cells was measured. Briefly, the 100 ml of Matrigel (Becton Dickinson) was coated onto the 12-well Transwell chamber (8 mm pore, Corning) prior to the seeding of HUVECs (3 × 105 cells) into the chamber. Meanwhile, the bottom chamber was added with serum-containing medium, whereas the upper chamber was added with serum-free medium. Then, 1 mM LY solution was prepared in PBS in the absence of Mg2+ or Ca2+. 100 μl of culture medium containing 0.1 mg/ml of LY was added on the top of the Transwell plate, and the bottom layer was added with 1.5 ml of serum-free culture medium and cultured for 2 h. Then, the cells were observed using a microscope. 100 μl of the sample was placed into the black-bottom of a 96-well plate. Finally, the Fluoroskan Ascent FL (Thermo Scientific) was employed to read the fluorescence under 20°C at the λex/em of 480/520 nm for LY.
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5

Lentiviral Transduction Optimization Protocols

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hARF6 ORF cDNA lentiviral clone was obtained from GeneCopoeia (EX-OL00097-LX304-B).
DSS was from Cayman Chemical. Puromycin, hexadimethrine bromide (polybrene), Lucifer Yellow CH dilithium salt, and fluorescein isothiocyanate–dextran were purchased from Sigma. EZ-Link Sulfo-NHS-Biotin and Collagenase, Type I, were obtained from Thermo Fisher Scientific. Polyethylenimine (PEI) was from Polysciences. AGK2 was from MCE. TM, TM-P4-Thal, and IMP-1088 were synthesized as previously described (29 (link), 38 (link), 39 (link)).
Antibodies were obtained from the following sources: Cell Signaling Technology—rabbit anti-E-cadherin (24E10), E-cadherin (24E10) rabbit mAb (Alexa Fluor® 488 Conjugate), rabbit anti-SirT2 (D4050), rabbit anti-HSP90 (C45G5), rabbit anti-Arf6 (D12G6), anti-mouse IgG, HRP-linked antibody (#7076), anti-rabbit IgG, and HRP-linked antibody (#7074); Santa Cruz—anti-β-actin antibody (C4) and anti-GAPDH (0411).
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6

Measuring Epithelial Barrier Function via TEER and Permeability

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Transepithelial electrical resistance (TEER) was measured using an EVOM2 ohmmeter with STX-2 probe (World Precision Instruments (WPI), Sarasota, FL, USA). Permeability was assessed using Lucifer Yellow CH dilithium salt, 10 mM in dH2O (Sigma Aldrich, Burlington, MA, USA). The apparent permeability (Papp) was measured using Equation (5) [17 (link)] where VR is the volume of the receiver compartment, dCR/dt is the change in the drug concentration of the receiver compartment over time, A is the surface area of the membrane (0.3 cm2), and CD0 is the concentration of the drug in the donor compartment at time zero.
Papp (cmmin)=VRdCRdtACD0
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7

Isolation and Culture of Bladder Cancer Cell Lines

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The BFTC909 cell line (a cell line from a patient with cell carcinoma of the renal pelvis) was purchased from Bioresource Collection and Research Center (BCRC). The BFTC909 cell line has been previously described in detail [18 (link)]. The UM-UC-14 cell line was purchased from the European Collection of Authenticated Cell Cultures (ECACC). UM-UC-14 cells were cultured in Eagle’s Minimum Essential Medium containing 2 mM glutamine (Thermo Fisher Scientific, Waltham, MA, USA), 1% nonessential amino acids (Thermo Fisher Scientific, Waltham, MA, USA), and 10% heat-inactivated FBS (Thermo Fisher Scientific, Waltham, MA, USA). Cisplatin (1 mg/mL; Kemoplat®) was purchased from Fresenius Kabi Oncology Limited, Solan, India. The fluorophores Lucifer Yellow CH dilithium salt (cat# L0259) and Calcein (cat# C0875) were acquired from Sigma, St. Louis, MO, USA. ON-TARGETplus control Non-targeting pool siRNAs (Cat# D-001810-05), ON-TARGETplus Human ZO-1 siRNA (Cat# L-007746-00-0005) and ON-TARGETplus Human E-cadherin siRNA (Cat# L-003877-00-0005) were purchased from Dharmacon, Lafayette, CO, USA. These siRNAs were dissolved at 10 μM in DNase and RNase- free water and stored in 10 μL aliquots at −80 °C until use.
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8

Confocal Imaging of Whole Brain

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Confocal image stacks of the whole brains or brain slices were acquired using a confocal laser scanning microscope (Leica TCS SP2, Wetzlar, Germany), using either a 10, 40, or 64x (NA: 0.4) IMM lens objective or a 20x (NA: 0.5) water lens objective. Sections were scanned at a resolution of 1024 × 1024 voxels each, and a voxel size of 0.61 μm × 0.61 μm × 1.3 μm, 0.73 μm × 0.73 μm × 1.1 μm or for distance mapping 0.23 × 0.23 × 1 and a step size of 0.1 μm. A 488 nm laser line was used for the neuropil stained tissue if Lucifer Yellow (0.4%, Lucifer Yellow CH dilithium salt, Sigma-Aldrich, München, Germany) or glutaraldehyde (GA, Sigma-Aldrich, München, Germany) was added and at 633 nm for the stained neuron. Immunostained preparations were scanned at 488, 543, or 633 nm depending on the used fluorophore. Linear intensity compensation was applied to adjust differences in brightness depending on scanning depth.
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9

Apelin-13 Signaling in Glucose Metabolism

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Apelin-13, glucose, mannitol, Lucifer Yellow CH dilithium salt, and Rhodamine-dextran were purchased from Sigma (St. Louis, USA). AICAR was purchased from Selleck (Houston, USA). Dulbecco’s modified Eagle’s medium(DMEM) and Opti-MEM (reduced serum media) were obtained from GIBCO (Grand Island, NY, USA). Newborn calf serum (NBCS) was supplied by Tianhang Biotechnology (Hangzhou, China). Polyclonal rabbit antibodies including anti-Cx43 antibody, anti-AMPKα, and anti-phospho-AMPKα, were obtained from Cell Signaling Technology (Massachusetts, USA). β-tubulin monoclonal antibody (HRP conjugated) was purchased from MultiSciences (Hangzhou, China).
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10

Measuring Epidermal Barrier Function

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To measure changes in barrier formation important for prevention of trans-epidermal water loss (TEWL), the inside-out epidermal barrier function was studied by turning the organotypic skin upside-down and applying 3.3 mg/ml EZ-link sulfo-NHS-LC-biotin (Thermo Fisher) to the bottom of the filters or Lucifer Yellow CH dilithium salt (1:100 dilution of 5% stock solution) (Sigma) on the top of the organotypic skin cultures for 60 min at RT. Excess probe was removed and organotypic skin was fixed in 4% formalin and prepared for histological processing as described previously (Dabelsteen et al., 2009 (link); Smits et al., 2017 (link); van den Bogaard et al., 2014 (link)). Deparaffinized sections were stained with Alexa Fluor 488 streptavidin (1:500) (Thermo Fisher) for detection of biotin. Sections were mounted with ProLong Gold Antifade with DAPI (Thermo Fisher).
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