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231 protocols using mounting medium

1

Visualizing FLAG-tagged MCM2 Protein

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Ten thousand OVTOKO and OVISE cells, which overexpressed FLAG-MCM2-FL and 3×FLAG-MCM2-ΔN, were cultured on Falcon® 4 Well Culture Slides (BD Falcon NJ, USA). Cells were fixed in 100% ethanol at −20° C for 20 min and then incubated with rabbit monoclonal anti-FLAG antibody (Sigma) at a 1:100 dilution in PBS for 1 h at room temperature. Then, they were stained with a TRITC-conjugated anti-rabbit antibody (Dako Cytomation, Glostrup, Denmark) at a 1:100 dilution for 20 min at room temperature. Slides were washed three times with PBS and mounted with mounting medium (Dako Cytomation) containing 4′,6-diamidino-2-phenylindole (DAPI, Abbott Molecular Inc., Des Plaines, IL, USA). Images were acquired using a FV1200 laser-scanning microscope (OLYMPUS, Tokyo, Japan) with a 1,000× objective.
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2

Quantifying Intracellular ROS in EPCs

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Intracellular ROS levels were measured by a Fluorometric Intracellular ROS Kit (MAK142; Sigma‐Aldrich, USA). EPCs were seeded on fibronectin‐coated 12 mm cover glasses in a 24‐well plate. The EPCs were treated with the indicated concentration of FGF21 for 12 h and 600 µM H2O2 for 1 h. The cells were washed with PBS and incubated with ROS Detection Reagent at 5% CO2 and 37°C for 1 h. After 1 h, the samples were carefully washed with PBS and then stained with DAPI (1:1000; ab228549; Abcam, USA) for 15 min at room temperature. The cover glasses were mounted with mounting medium (Dako, USA), and images were captured with a laser confocal microscope (ZEISS LSM 880, ZEISS, Germany).
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3

Immunostaining of Chondrocyte Markers

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Cryosections (10 μm) from T1 and T4 3D pellets were incubated for 1 h at 4 °C with primary antibodies against COLII (1:200 dilution, MAB 1330, Ms, Millipore) and SOX9 (1:500 dilution, AB5535, Rb, Abcam). Antibodies conjugated with Alexa Fluor 488 and Alexa Fluor 555 (Thermo Fisher Scientific) were used as secondary antibodies for COLII and SOX9, respectively. Sections were mounted in mounting medium (Dako Cytomation) and visualized on an LSM 880 Meta confocal microscope. Fluorescence was monitored in the appropriate channels to detect Alexa Fluor 555 (1:1000 dilution, A21429, excitation, 555 nm; emission, 565 nm), Alexa Fluor 488 (1:1000 dilution, A21202, excitation, 495 nm; emission 519 nm), and DAPI (excitation, 358 nm; emission, 461 nm).
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4

Immunofluorescence Detection of Nuclear β-Catenin

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Cultured cells or tissue were fixed with 4% paraformaldehyde for 20 min and washed with PBS three times followed by blocking with 10% normal goat serum plus 1% BSA (Sigma-Aldrich, Shanghai, China) for 45 min, and incubated with rabbit anti-β-catenin (1:100) (Santa Cruz Biotechnology, Dallas, TX, USA) at 4°C in the dark overnight. After washing three times with PBS, cells and tissue were further incubated with cy3-conjugated goat anti-rabbit and HRP-conjugated goat anti-rabbit secondary antibodies for 1 h at 37°C. Subsequently, the slides were cover slipped with mounting medium (Dako, Dalian, Liaoning, China) containing DAPI to counter stain the nuclei and imaged with fluorescence or bright field microscope. Scoring for the slides were performed according to a previous publication [13 ]. Briefly, β-catenin staining with a nuclear localization pattern was examined by two independent pathologists with bright field microscope, and any nuclear staining of breast cancer cells was assumed as positive. Intensity of staining was scored on a scale of 0–3+ as follows: no specific staining (0), weak (1+), moderate (2+), and strong (3+). The Pearson correlation analysis was used to establish the relationship between UCA1 gene expression and nuclear β-catenin levels.
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5

Immunocytochemistry of Primary Neurons

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For immunocytochemistry, coverslips with primary neurons were fixed with 4% paraformaldehyde/4% sucrose for 8 min, washed with PBS, and permeabilized with 0.3% Triton-X100/PBS for 10 min. After blocking in 5% NGS/PBS for 30 min, incubation with primary antibodies followed overnight at 4°C: rb-anti-pan-Synapsin (1:500, E028, T. Südhof, Stanford University), ms-anti-PSD-95 (1:500, NeuroMab), ch-anti-MAP2 (1:10,000, Abcam), rb-anti-Cofilin1 (1:7,000, Abcam), rb-anti-protein-interacting-with-C-kinase-1 (PICK1) (1:500, Proteintech), as well as Alexa568-phalloidin (1:100, Invitrogen), all diluted in 5% NGS/PBS. After washing, cells were incubated with the following secondary antibodies: Alexa488 goat-anti-rabbit IgG, Alexa647 goat-anti-chicken IgG (Invitrogen), Cy3-conjugated goat-anti-mouse IgG (Jackson Immuno Research), diluted 1:500 in 5% NGS/PBS for 1 h at RT. After additional washings in PBS, coverslips were embedded in mounting medium (Dako).
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Immunofluorescent Staining of Frozen Sections

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Frozen sections (5-10 μm) were thawed at room temperature and fixed in 4% formaldehyde for 5 min. Sections were blocked with 5% donkey serum and 0.1% Triton-X for 30 min at room temperature. Sections were incubated with anti-GFP (Abcam 6673), anti-PAX7 (DSHB) or anti-MHC (DSHB) overnight at 4°C and with secondary antibodies for 1 hour at room temperature. Antibodies were diluted in blocking buffer and sections were mounted in mounting medium (DakoCytomation) containing 5 μg/ml DAPI (Sigma). EdU detection was performed as previously described15 (link). An LSM 700 Meta laser microscope with LSM 6.0 Image Browser software (Carl Zeiss) was used for confocal analyses. One in every 8 sections was selected and labelled. For PAX7+ satellite cell counting, 3 sections were randomly selected and counted. For blastema YFP+ cell counting, all the sections in the region from regenerate tip to the bone were counted.
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7

Visualizing Sema3A Effects on RBEC

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RBEC were cultured in a 24 well plate on glass coverslips. Cells grew vigorously and did not appear to enter quiescence and de-activation even at relatively low density. Cells were subjected to the following treatment: 1) Sema3A treatment: 0.2, 1, 2, 5 or 10 µg recombinant Sema3A was added into 200 µl medium. Cells were treated for 1 h; 2) Denatured Sema3A treatment: Sema3A (2 µg) was denatured in the boiling water for 10 min. After it was cooled to room temperature, denatured Sema3A was added into cells for 1 h; 3) Antibody pre-treatment: specific antibodies to Neuropilin 1, Neuropilin 2, PlexinA1, VEGFR1 or VEGFR2 (2 µg) were added to 200 µl cell culture medium to treat cells for 1 h, followed by Sema3A (2 µg) treatment for another 1 h.
After these treatments, the culture medium was removed and the cells were fixed in freshly prepared 4% formaldehyde (in 1 X PBS) for 20 min. Cells were washed in PBS twice, 5 min each, incubated with blocking solution (1.5% BSA in PBS, containing 0.2% Triton X-100 and 0.02% NaN3) for 30 min, and stained with rhodamine labelled phalloidin (1:100, in blocking solution) for 1 h. After washing with PBS (3 min each for 3 times), deionized water (once), cells were mounted in Dako mounting medium (spiked with Hoechst 32558) and dried for microscopic analysis.
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8

Isolation and Immunostaining of Drosophila Imaginal Discs

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Larvae were collected in a cavity block, washed and dissected in 1x PBS. To access the imaginal discs, a cut was made at the posterior two third part of the larvae and slight pressure was applied to expose the contents of the larval gut. The excess tissue was removed and the remaining 1/3rd was turned inside out with the help of a pair of needles. The exposed imaginal discs attached to the inverted cuticle were fixed using 4% paraformaldehyde prepared in 1x PBS containing 0.1% Triton X-100 (1x PBST) for 10 min at room temperature. Discs were given three 1-min rinses with 1x PBST followed by three 10 min washes with the same. Wing discs were blocked for 2 h at room temperature in blocking solution (0.5% BSA, 2% FBS in 1x PBST; pH 7.4). Samples were incubated overnight with primary antibody prepared in blocking buffer minus Triton X-100. Discs were washed twice with blocking buffer and incubated for 2 h at room temperature with fluorescently labeled secondary antibody (Molecular Probes, Invitrogen) prepared in blocking solution without FBS. Two 15 min washes with 1x PBST were performed, followed by two 10 min washes with 1x PBS. Discs were incubated for 10 min with DAPI (SIGMA; working concentration, 1 µg/mL). Two 10-min washes were performed using 1x PBS. The desired imaginal discs were detached and mounted in mounting medium (DAKO-cytomation).
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9

Confocal Microscopy for Fibroblast Analysis

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Confocal microscopy was performed with the Hunter fibroblasts, which were grown overnight in DMEM with 10% fetal bovine serum (FBS) to >50% confluency on glass slides (Marienfeld-Superior, Lauda-Königshofen, Germany). Two enzymes (40 nm) were added to the cells for 24 h, respectively. Cells were fixed and permeabilized. The slides were blocked with 10% normal goat serum (NGS, Invitrogen, NY, USA) in 0.1% Triton X-100 at room temperature for one hour. IDS B-5 (Santa Cruz, TX, USA) as a primary antibody and PE-labeled anti-mouse IgG (1:100, Santa Cruz) as a secondary antibody were treated for one hour for IDS protein staining. For heparan sulfate (HS) staining, FITC-labeled anti-HS antibody (10E4, 1:50, US Biological, MA, USA) was added and incubated for 1 h. The washed slides were treated with Hoechst 33342 (1:2000, Thermo, Rockford, IL, USA) for nuclear staining and mounted with a mounting medium (DAKO, Glostrup, Denmark). Confocal microscopy was performed with a LSM 700 inverted fluorescence microscope (Carl Zeiss, Oberkochen, Germany).
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10

Recombinant von Willebrand Factor Domains Protocol

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Human VWF was purchased from Merck Chemicals; histamine from Sigma Aldrich, Germany. The recombinant VWF domains (A1, A2, and A3) were produced in HEK293 cells (Posch et al., 2017 (link)). Pneumococcus-specific polyclonal antiserum was generated in rabbit against heat inactivated serotype 35A and 2 bacteria (Pineda, Germany). IgG was purified using protein A/G sepharose. Mouse anti-human VWF antibody (polyclonal IgG) and FITC-conjugated VWF-specific antibody were purchased from Abcam (ab8822), peroxidase-conjugated mouse anti-VWF antibody from Hämochrom Diagnostika; Alexa Fluor 488-conjugated goat anti-rabbit and goat anti-mouse IgG, Alexa Fluor 568-conjugated goat anti-rabbit and goat anti-mouse IgG were from Thermo Fisher Scientific (formerly Invitrogen), paraformaldehyde (PFA) was purchased from EM Science and mounting medium from Dako.
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