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Avance 3 hd 400 mhz spectrometer

Manufactured by Bruker
Sourced in United States, Switzerland, Germany

The Avance III HD 400 MHz spectrometer is a laboratory instrument designed for nuclear magnetic resonance (NMR) analysis. It provides a magnetic field strength of 400 MHz, enabling the investigation of molecular structures and dynamics. The core function of this spectrometer is to generate and detect radio frequency signals to analyze the behavior of atomic nuclei within a sample.

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43 protocols using avance 3 hd 400 mhz spectrometer

1

Structural Elucidation of Isolated Metabolites

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Structures of the isolated metabolites were determined based on LC-ESI-MS analysis performed using waters®xevo-tqd® (UPLC/MS/MS (p/n 186005453, IET, Mundelein, IL, USA) and NMR spectroscopic analysis, which was recorded on a Bruker AVANCE HD III 400 MHz spectrometer (Bruker AG, Faellanden, Switzerland). NMR samples were dissolved in methanol-d4 or chloroform-d3 (Sigma Aldrich, Germany) and transferred to 3 mm NMR tubes (Bruker AG, Faellanden, Switzerland).
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2

Bioactivity-Guided Fractionation of Natural Product

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To investigate the antimicrobial and antibiofilm activity based on bio-guided fractionation, the FEA (25 g) was applied on vacuum liquid chromatography (VLC) packed with silica gel 60 mesh (Merck, Darmstadt, Germany), elution was performed using a gradient system of n-hexane-EtOAc from 100 to 0% followed by DCM-MeOH from 100 to 0%. The collected fractions were investigated using thin layer chromatography plates by UV different wave lengths (254 and 365nm) and sprayed with vanillin/sulfuric acid reagent. Each fraction was further clarified using preparative HPLC (C-18 column) eluted with gradient acetonitrile-H2O (90–100%). Last purification steps were achieved by means of preparative HPLC (Knauer, Berlin, Germany) on Kromasil ODS preparative column (10 by 250 mm) with flow rate 4 mL/min and UV detection. The identification and elucidation of the isolated compounds from the fractions were done using NMR spectra recorded on a Bruker AVANCE HD III 400 MHz spectrometer (Bruker, Fällanden, Switzerland). A schematic fractionation protocol was shown in Figure S7.
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3

Isolation and Characterization of Coumarins

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The dichloromethane residue (50 g) was chosen for further investigation based on the biological activity and the published data regarding the presence of coumarins [12 (link),39 (link)]. Vacuum liquid chromatography (VLC) was used for the fractionation, and the column was packed with silica gel 60H. A gradient elution system was carried out using n-hexane/CH2Cl2 and CH2Cl2/methanol systems.
Vacuum liquid chromatography eluates (50 mL) were investigated using TLC, silica gel 60F 254, and precoated plates by different solvent systems with different polarities. Two fractions with the clearest and major spots named fraction A and fraction B were chosen for further purification using Puriflash 4100 system (Interchim; Montluçon, France), consisting of 25 g-flash-NP column (30 µm), a mixing HPLC quaternary pump, a PDA–UV-Vis detector 190–840 nm, a fraction collector, and a sample loading module. For system controlling and process monitoring, Interchim Software 5.0 was used. Elution was done using normal phase gradient elution systems, and the samples were collected in test tubes, and then the solvents were evaporated.
The isolated compounds were subjected to identification and structure elucidation using NMR spectra recorded on a Bruker AVANCE HD III 400 MHz spectrometer (Bruker, Fällanden, Switzerland).
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4

Synthesis and Characterization of Organometallic Compounds

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All reagents were commercially available and used as supplied without further purification. Deuterated solvents were purchased from Cambridge Isotope Laboratory (Andover, MA). Compound 139 (link), 240 (link), 439 (link), 540 (link) was prepared according to the published procedures. 1H NMR, 31P{1H} NMR spectra and 2D COSY NMR spectra were recorded on Bruker AVANCE III HD 400 MHz spectrometer and Bruker AVANCE III HD 600 MHz spectrometer. 1H NMR chemical shifts are reported relative to residual solvent signals. Mass spectra were recorded on the Micromass Quattro II triple-quadrupole mass spectrometer using electrospray ionization, Thermo Scientific Q Exactive mass spectrometer using electrospray ionization and Agilent 6545 Q-TOF using electrospray ionization. The single crystals data were collected on a Nonius KappaCCD diffractometer equipped with Mo K-alpha radiation (λ = 0.71073 Å) and a BRUKER APEXII CCD.
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5

Characterization of Dual-Targeting Dendrimer

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The chemical structure of the dual-targeting dendrimer was characterized by 1H NMR measurement on AVANCE III HD 400 MHz spectrometer (Bruker, USA) using D2O as solvent. 1H NMR (D2O, 400 MHz, ppm): δ 2.25-2.40 (-CH2CH2CONH-); δ 2.45-2.55 (-CH2CH2N<); δ 2.68-2.74 (-NCH2CH2CO-); δ 2.95-3.20 (-CONHCH2CH2- and -CH2CH2NH2); δ 3.32-3.75 (-CH2CH2O-); δ 6.79 (-COCH=CHCO-); δ 3.30 (-OCH3). Size distribution and zeta potential of the dendrimer-based carriers were measured by Zetasizer Nano ZS nanoparticle size analyzer (Malvern Instruments Ltd., UK) at a concentration of 0.1 mg/mL in PBS. The samples were sonicated for 3 min and filtered with 200 nm filter membrane before detection. Morphological characterization of the dendrimer-based carriers was performed on a Ht-7700 transmission electron microscope (Hitachi, Japan) at acceleration voltage of 80 KV. TEM samples were made by dropping 2.5 μL samples (1 mg/mL) on carbon-coated grids and deposited for 30 min. Then the samples were negative stained by 1 wt% uranyl acetate for 25 s before test. Stability of the dual-functional dendrimer in water and PBS was detected by DLS within 72 h. Briefly, the samples were dissolved into deionized water and PBS at a concentration of 1 mg/mL. Then the particle size was detected by a Zetasizer Nano ZS nanoparticle size analyzer at 0 h, 12 h, 24 h, 48 h and 72 h.
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6

Comprehensive Characterization of NCTD Hydrogel

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Zeta potential was detected by Malvern Zetasizer Nano ZS (Zetasizer Nano ZS 90, Malvern Instrument, UK) at 25 °C. The morphological of hydrogel was recorded by scanning electron microscopy (SEM, ZEISS-SUPRA55, Germany). Rheology tests were performed on the rheometer (MCR 302, Aaton paar, Austria) to investigate mechanical properties and stability of NCTD Gel. In order to explore self-assembly mechanism of NCTD Gel, thermodynamic mechanism was recorded on a NANO ITC (TA, USA). UV–vis spectra were recorded on a UV–vis spectrophotometer (HITACHI UH5300, Japan) with the range of 200–400 nm. FT-IR spectra were recorded on a Fourier transform infrared spectrometer (NicoletiS10, Thermo, USA) with the range of 4000-400 cm−1. CD spectra were obtained by using Chirascan V100 (Applied Photophysics, UK) with the range of 200–400 nm. 1H-NMR (Avance IIIHD 400 MHz spectrometer, Bruker, America) spectra were used to ensure the formation mechanism between GA and NCTD. MD simulation was performed by GROMACS 2019.6 software to reveal the self-assembly mechanism of NCTD Gel.
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7

Synthesis and Characterization of Isoprothiolane and Phenazine-1-carboxylic Acid

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Technical products of Isoprothiolane (IPT) and Phenazine-1-carboxylic acid (PCA) were provided by the College of Agriculture, Yangtze University. All chemicals and solvents were commercially obtained and used directly without further purification. Column chromatography was performed over pure silica gel 60 (200–300 mesh, Liang Chen Gui Yuan Co., Ltd., Anhui, China). Thin-layer chromatography (TLC) was performed on silica gel 60 GF254 (Qingdao Hai Yang Chemical Co., Ltd., Qingdao, China). The melting points of all target compounds were determined by using a WRR melting point apparatus (Shanghai Jingke Industrial Co., Ltd., Shanghai, China) and are uncorrected. 1H and 13C NMR spectra were recorded in DMSO-d6 or CDCl3 as the solvent using an AVANCE III HD 400 MHz spectrometer (Bruker Co., Ltd., Fällanden, Switzerland). Tetramethylsilane was used as the internal standard. High-Resolution Mass Spectra (HRMS) were obtained using electrospray ionization (ESI) technique by collision-induced dissociation on a Thermo Scientific Q Exactive instrument (Thermo Fisher Scientific, Bremen, Germany). The samples were dissolved in HPLC methanol and filtered by a 0.2 μm membrane. Then, it was infused using a syringe pump with a flow rate of 10 μL/min, and analyzed in the positive mode within a mass range m/z 100–1500.
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8

NMR Characterization of S-2HG and S-5-Oxotetrahydrofuran-2-Carboxylic Acid

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Nuclear magnetic resonance (NMR) data were acquired using a Bruker AVANCE III HD 400 MHz spectrometer (Bruker Corp., Billerica, MA, USA). A (S)-5-oxotetrahydrofuran-2-carboxylic acid sample was dissolved in CDCl3 with 0.03% v/v tetramethylsilane (Sigma-Aldrich) and transferred to 5 mm NMR standard tubes. (S)-2HG was dissolved in double-distilled water. The (S)-2HG aqueous solution was analyzed inside a 5 mm NMR tube using a coaxial system (Wilmad® coaxial insert, Wilmad-LabGlass, Vineland, NJ, USA), filled with D2O with 0.75% sodium 3-(trimethylsilyl)propionate-2,2,3,3-d4(TSP) (Sigma-Aldrich).
1H and 13C-NMR spectra of (S)-5-oxotetrahydrofuran-2-carboxylic acid were obtained using standard acquisition parameters. The (S)-2HG proton spectrum was acquired using the noesypr1d pulse sequence for water signal suppression. Compounds were identified by comparing the obtained data with previously reported spectra (Bal & Gryff-Keller, 2002 (link)). DEPT-135, HMBC, and HSQC spectra were also acquired. Relative (S)-2HG purity was determined by the integration of all the signals of the 1H-NMR spectrum, with exception of the 13C couplings and the TSP signal using a method similar to published chromatographic procedures (Pauli, Jaki & Lankin, 2007 (link)). The obtained data were processed and analyzed using Bruker TopSpin 3.2 software (Bruker Corp.) and used to confirm (S)-2HG synthesis.
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9

Pulsed-field-gradient NMR for self-diffusion measurement

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Pulsed-field-gradient NMR (PFG-NMR) measurements were performed using an Avance III HD 400 MHz spectrometer (Bruker) with a permanent field strength of 9.4 T. The gradient probe head ‘Diff50’ (Bruker) was used with selective radio frequency inserts for 1H and 19F. The temperature was controlled using a GMH 3710 controller with a PT100 thermocouple (Greisinger electronics, Germany). The samples were filled into the NMR tubes inside a glove box and the tubes were evacuated and then ablated.
A stimulated echo pulse sequence with field gradient pulses was applied to measure the self-diffusion coefficients.29 (link) The self-diffusion coefficients D were calculated by eqn (1) where b is defined by eqn (1), δ is the gradient pulse duration, g the gradient strength, and Δ the observation time between two gradient pulses. In a series of spectra, g was incremented stepwise in order to vary b, and respective peak intensities were evaluated to yield I(g).
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10

Spectroscopic Characterization of Compounds

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All reagents and solvents were obtained from commercial sources and used as received, unless noted otherwise. Elemental analyses on were performed by Canadian Microanalytical Services Ltd. NMR spectra were recorded on a Bruker Avance III HD 400 MHz spectrometer. 1H NMR chemical shifts were referenced to CDCl3 (7.26 ppm), D2O (4.80 ppm), and DMSO-d6 (2.55 ppm). 13C NMR chemical shifts were referenced to CDCl3 (77.23 ppm), and DMSO-d6 (39.52 ppm). The following abbreviations were used to describe multiplets: s (singlet), t (triplet), m (multiplet), and br (broad). The following format was used to report peaks: chemical shift in ppm [multiplicity, coupling constant(s) in Hz, integral, and assignment]. Infrared (IR) spectra were recorded on a Jasco FT/IR-4600 and Bruker Alpha FT/IR in the 4000–400 cm−1 range. High-resolution mass spectra (HR-MS) were recorded on an Agilent Technologies 6224 TOF LC/MS system. UV-Vis spectra were recorded in a 3-mL quartz cuvette with a path length of 1.0 cm on a 8453 Agilent spectrophotometer between 190 and 1100 nm. The crystalline materials used for XRD analysis were also used for elemental analysis and spectroscopic characterizations.
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