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144 protocols using sigma vp

1

Carbon Fiber Surface Morphology Analysis

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The surface morphologies of the virgin and recycled carbon fibre were observed using a scanning electron microscope (Sigma VP, Zeiss®, Oberkochen, Germany) to investigate the degree of degradation of the resin matrix and potential damage to the fibre surfaces [20 ]. The operating accelerating voltage was 10 kV and the working distance was 9.5–10 mm. Secondary electron detector (SE2) and In-lens detectors were applied for SEM imaging.
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2

Discovery and Characterization of New Isoetes Species

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Fieldwork was carried out by Balthasar Dubs, a Swiss botanist and ornithologist who intensively collected plants in the Pantanal wetlands in Brazil and found Isoetesdubsii on 3 June 1988 in the Pantanal do Rio Negro (currently belonging to the municipalities of Aquidauana and Corumbá), in the state of Mato Grosso do Sul, mid-western Brazil. We also tried to locate this new species in the same area in November 2017. For I.santacruzensis, fieldwork was carried out by Timothy J. Killeen on 11 November 1994 in the province of Ñuflo de Chávez, Department of Santa Cruz, Bolivia.
Spore images were generated by transferring the spores to aluminium scanning electron microscope (SEM) stubs coated with a carbon adhesive. The stubs were then coated with gold-palladium-alloy in a sputter-coater for 180 sec, after which the spores were digitally imaged using a Zeiss SIGMA VP. The resulting images were adjusted in Photoshop for contrast and the background was altered to black. To measure the spores, we used a minimum of 20 spores per sporangium, from at least two sporangia. The spore measurements were taken using SEM. The terminology used for the description of the spores follows that of Punt et al. (2007) (link), with some modification using Hickey (1986a) (link).
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3

Microscopic Analysis of Fungal Cell Morphology

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After treatment with the crude extract of Streptomyces sp. CB-75, the cells of F. oxysporum f. sp. cubense Race 4 were observed by SEM according to a previously published method (Supaphon et al., 2013 (link)), with slight modifications. The inoculum was prepared by growing the test pathogen for 5~7 days. Conidial suspensions were prepared according to published procedures (Wedge and Kuhajek, 1998 ). Conidial concentrations were determined photometrically (Espinel-Ingroff and Kerkering, 1991 (link); Wedge and Kuhajek, 1998 ) from a standard curve and suspensions were then adjusted with sterile distilled water to a concentration of 1.0 × 105 conidia/ml. Conidia were then treated with the crude extract of CB-75 at the 2 × MIC value for 24 h. The cells were fixed with 2.5% (v/v) glutaraldehyde (C3H8O2) in phosphate-buffered saline (PBS) for 2 h, and washed with PBS (pH 7.4) and water. The cells were dehydrated with series of increasing concentrations of alcohol (30, 50, 70, 80, 90, and 100%) for 20 min. Finally, the ethanol was displaced with isoamyl acetate. The cells were dried for 30 min and mounted onto a steel stub with double-sided carbon tape. Samples were coated with a film of gold-palladium alloy under vacuum and observed with a scanning electron microscope (Zeiss Sigma VP, Germany).
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4

Marginal Gap Measurement of Dental Inlays

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The measurement of the marginal gap as defined by Holmes et al. (1989) of the individual specimens was carried out with a scanning electron microscope (Sigma VP, Carl Zeiss AG, Oberkochen, Germany) in low vacuum mode (VP) at 20 Pa at 20 kV and 500-fold magnification. The marginal gap was measured with the “point-to-point-measure” function of the SmartSEM computer software (Carl Zeiss AG, Oberkochen, Germany). The mesial and distal proximal areas of inlays were investigated with respect to the marginal gap and the absolute marginal discrepancy (aMOP gap) [28 (link)]. Since the inlay is suitably contoured, the marginal gap and the absolute marginal discrepancy (MOP gap) are equal—in this case, 98.37 μm (Fig. 4).

Measurements of the marginal gap (MOP) and absolute marginal gap (aMOP)

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5

Scanning Electron Microscopy of Extruded Filaments

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The microstructures of extruded filaments
and scaffolds after freeze-drying were observed by scanning electron
microscopy (SEM, Zeiss Sigma VP, German) operated under vacuum and
at an accelerated voltage of 2 kV. The dry samples were fixed on metal
stubs using a carbon tape and coated with a 4 nm layer of gold palladium
alloy using a LECIA EM ACE600 sputter coater.
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6

Epon Embedding and SBF-SEM Imaging of Tissue

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Tissue wedges were sent to Cleveland Clinic (Cleveland, OH) for processing. A SBF-SEM technician at Cleveland Clinic processed and embedded the tissue into Epon blocks using a previously described method (Deerinck et al., 2010 ). Briefly, tissues were post-fixed with OsO4/K ferrocyanide and thiocarbohydrazide and en-bloc stained with uranyl acetate and lead aspartate. Tissues were dehydrated with a series of ethanol dilutions and embedded in Epon resin. The regions of interest (including SC and TM) in each block were imaged using a Zeiss Sigma VP serial block-face scanning electron microscope equipped with a Gatan 3View (Gatan, Inc., Pleasanton, CA, USA) in-chamber ultramicrotome stage and low-kV backscattered electron detectors that were optimized for 3View systems. After each image was taken of the block face, the automated ultramicrotome cut a section, and then another image was taken of the block face until the entire block was cut through. Pixel size was 0.0101 μm x 0.0101 μm, and section thickness was 0.13 μm. Field size was 141 μm x 60 to 71 μm. An example of the full imaging field for each electron micrograph is shown in Fig 2A. Images were compiled, aligned, and sent to Boston University School of Medicine for analysis.
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7

Characterization of Chemical Catalysts

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Chemicals applied in this work for the synthesis of catalyst and products were supplied by Merck and Sigma-Aldrich chemical companies and used without further purification. Progress of the reactions was monitored by TLC using silica gel SIL G/UV 254 plates. Melting points were recorded on a Büchi B-545 apparatus in open capillary tubes. Fourier transform-infrared spectra (FT-IR) of the samples were recorded on a frontier FT-IR PerkinElmer with MID IR detector. The 1H NMR spectra (301 MHz) and 13C NMR (76 MHz) were recorded with a Bruker spectrometer or Varian Mercury 300 MHz Spectrometer (Varian Inv., Palo Alto, CA, USA) using CDCl3 or DMSOd6 as solvent. Thermal gravimetry analysis TG-DTG, were carried out on a STA 1500 from Rheometric Scientific at Day Petronic company. EDX and Elemental mapping analysis were performed using a SIGMA VP from Zeiss at Day Petronic company.
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8

Reflectance and Transmission Spectra Characterization

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The visible and NSWIR photographs of the samples were taken using Nikon D3300 camera and NIRvana ST 640 camera, respectively. Microscopy was performed using the Zeiss Axio Imager.A2m optical microscope and Zeiss Sigma VP scanning electron microscope. The reflectance spectra were taken separately in two wavelength ranges: visible to near-infrared (0.4 to 1.0 μm) and near-infrared to LWIR (1.0 to 15 μm) for incident angles of 30°. In the first range, the reflectance was measured using an integrating sphere (model IS200, Thorlabs) containing a silicon detector and coupled to a high-power supercontinuum laser (SuperK EXTREME, NKT Photonics) and a tunable filter (Fianium LLTF contrast). The sample was put inside the integrating sphere. A calibrated diffuse reflector (item SM05CP2C, Thorlabs) was used as the reference. In the second range, reflectance was measured using a gold integrating sphere (model 4P-GPS-020-SL, Labsphere) coupled with a mercury cadmium telluride detector and a Fourier transform infrared spectrometer (VERTEX 70v, Bruker). A gold-coated aluminum foil was used as the reference. The spectra in the two ranges were then patched to obtain the final reflectance. The transmission spectra were obtained in the same way, except that the sample was placed at the mouth of the integrating sphere.
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9

Comprehensive Characterization of Synthesized Nanoparticles

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Ultraviolet absorption of the synthesized nanoparticles was investigated using a UV-Vis Drop 250-211Fo75 spectrophotometer (Germany). The crystalline structure of the powdered samples was examined using XRD with the X'Pert PRO (PANalytical, Netherlands). Scanning electron microscopy (SEM) was performed using a Sigma VP (Carl Zeiss) to determine the morphological properties of the NPs. To determine the exact size and shape of the synthesized nanoparticles, a transmission electron microscope (TEM, FEI Tecnai) was used. The magnetic properties of the SPIONPs were investigated using a vibrating sample magnetometer (VSM, Lake Shore-7400, Lake Shore Cryonics, USA).
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10

Hydrogel Structural Characterization

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Hydrogels were formed as previously described in Section 2.2. After incubation at 37 °C, hydrogels were frozen overnight at −80 °C in individual wells in a 12-well plate. Frozen hydrogels were lyophilized overnight (Labcon, Petaluma, CA, USA), mounted onto specimen stubs with carbon tape and paint, and gold sputtercoated. Samples were imaged using a Carl Zeiss SigmaVP (Oberkochen, Germany) scanning electron microscope at 300× magnification to visualize the hydrogel structure.
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