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30 protocols using f4 80 pe cy7

1

Multicolor Flow Cytometry of Retinal Macrophages

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The retinal cells were stained with fluorescent dyes conjugated to antibodies as follows: CD206-FITC (C068C2; BioLegend, San Diego, CA, USA); 7-AAD (BD Pharmingen, San Jose, CA, USA); CD11b-APC-Cy7 (M1/70; BD Biosciences San Jose, CA, USA); f4/80-PE-Cy7 (BM8; BioLegend). After staining, the cells were washed twice with a FACS buffer (0.5% BSA in PBS buffer) and suspended in the FACS buffer for FACS analyses. Data were collected using a FACS Canto II flow cytometer (BD Biosciences) and analyzed by FCS Express software (De Novo Software, Los Angeles, CA, USA). The 7-AAD− CD11b+ f4/80+ cells were defined as retinal macrophages.
To investigate intracellular cytokine production, retinal cells were treated with a leukocyte activation cocktail with BD GolgiPlugTM (BD Biosciences) for 4.5 h and with a BD Cytofix/Cytoperm Fixation/PermeabilizationTM kit (BD Biosciences) and then stained with the following antibodies: TNF-α-FITC (MP6-XT22; eBiosciences, San Diego, CA, USA); IL-10-PE (GK1.5; BioLegend); CD11b-APC-Cy7 (M1/70; BD Biosciences); f4/80-PE-Cy7 (BM8; BioLegend); and 7-AAD (BD Pharmingen, San Jose, CA, USA). The 7-AAD− CD11b+ f4/80+ cells were defined as retinal macrophages. Data were collected using a FACS Canto II flow cytometer (BD Biosciences) and analyzed by FCS Express software (De Novo Software).
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2

Characterizing Leukocyte Infiltrates in PJI

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Leukocyte infiltrates into the surrounding soft tissue following S. aureus PJI were characterized using flow cytometry as previously described (59 (link)). Briefly, the soft tissue surrounding the knee joint was excised, disrupted using the blunt end of a 3-ml syringe plunger in PBS containing protease inhibitor (Thermo Scientific, Rockford, IL), and passed through a 70-μm filter. Red blood cells (RBCs) were lysed using RBC lysis buffer (BioLegend, San Diego, CA), and the single-cell suspension was stained with CD11b-fluorescein isothiocyanate (FITC), CD45-allophycocyanin (APC), Ly6G-phycoerythrin (PE), Ly6C-peridinin chlorophyll protein (PerCP)-Cy5.5, F4/80-PE-Cy7 (BioLegend and BD Biosciences, San Diego, CA), and a Live/Dead fixable blue dead cell stain kit (Invitrogen, Eugene, OR) according to the manufacturers’ instructions. Cell populations were analyzed using a BD LSR II and FACSDiva software (BD Bioscience, San Jose, CA), where MDSCs (CD11bhigh Ly6G+ Ly6C+ F4/80), neutrophils (CD11blow Ly6G+ Ly6C+ F4/80), monocytes (Ly6G Ly6C+ F4/80), and MΦs (Ly6G Ly6C F4/80+) are reported as the percentage of live CD45+ cells.
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3

Multiparameter Phenotyping of Immune Cells

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Single-cell suspensions from the SVF of fat tissue, spleen, and blood samples were incubated in FcBlock (BD Biosciences) for 15 min at 4°C. The cells were then stained with fluorophore-conjugated antibodies for 20 min at 4°C in the dark. The antibodies were purchased from BD Biosciences (CD8-FITC, CD11c-FITC, NK1.1-FITC, CD4-PE/Cy7, CD45.2-APC), eBioscience (San Diego, CA) (NKG2D-PE, F4/80-PE/Cy7, CD11b-APC/eFluor780), or BioLegend (San Diego, CA) (CD3ε-Pacific Blue). Dead cells were excluded with 7-AAD staining (BD Biosciences). Flow cytometry data was acquired with FACSCantoII or LSRII flow cytometer (BD Biosciences) and analyzed with FlowJo (Treestar, Ashland, OR).
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4

Analyzing Macrophage Responses to Plasma Exosomes

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The mouse macrophage cell line RAW cells, RAW 264.7, (ATCC® TIB-7) (40 × 104) was seeded in 24-well plates in Dulbecco's Modified Eagle Medium (DMEM) supplemented with 10% fetal bovine serum, 1% 100 mM sodium pyruvate, 1% of 10,000 U/mL penicillin and 10,000 µg/mL streptomycin and maintained in 37 °C humidified incubator containing 5% CO2. After reaching confluence, cell medium was replaced with 10% depleted FBS (exosome-depleted FBS media supplement (SBI, Palo Alto, CA) in DMEM, and the cells were incubated with plasma exosomes derived from experimental groups and incubated at 37 °C, 5% CO2 for 24 h. Further, cells were stained with fluorescence conjugate-primary antibodies (F4/80-PE/Cy7: Cat# 123,114, and CD11c-APC: Cat#117,310, Biolegend, San Diego, CA) in staining buffer (1% BSA in PBS) at 4 °C for 30 min. After washed twice cells were analyzed with a flow cytometer (Canto II; BD Biosciences, San Jose, CA), and data analysis was performed using the FlowJo software (Tree Star, Ashland, OR).
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5

Flow Cytometry Panel for Immune Cell Profiling

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Flow cytometry antibodies: B220/CD45R-e450, CD3-e780, CD11b-APC, CD11c-e780, CD19-e780, CD49b-e780 CD86-Alexa Fluor 488, NK1.1-e780 from eBioscience. CD8α-PECF594, CD40-PE from BD Pharmingen. B220-BV650, CD11b-BV711, CD11c-BV421, CD40-FITC, CD80-BV605, CD86-A700, F4/80-PE-Cy7, Ly6C-BV570, Ly6G-APC-Cy7, MHC II-PerCP-Cy5.5 from Biolegend. PDCA-1-PE, FcR block from Miltenyi Biotec. The S9.6 monoclonal antibody against RNA:DNA hybrids was purified from hybridoma cell line HB-8730 (ATCC-LGC Promochem) supernatant using a Protein A/G column as previously described (Pohjoismaki et al, 2010 (link)).
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6

Comprehensive Immune Cell Profiling

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An LSR II (BD Biosciences) was used for flow cytometry. The following antibodies were used: LIVE/DEAD Aqua (Life Technologies, L34957), CD3 APC/Cy7 (BioLegend, 300317), CD3e PerCP/Cy5.5 (BD, 561108), CD4 PB (Invitrogen, MHCD0428), CD8 BV605 (BD, 564115), CD25 PE-Cy7 (eBioscience, 25025942), Foxp3 PE (eBioscience, 12477182), IFN-γ PE-Cy7 (eBioscience, 25731141), TNF-α FITC (BD, 554418), IL-2 APC (BD, 562041), F4/80 PE-Cy7 (BioLegend, 123113), CD16/CD32 APC (eBioscience, 17016181), CD16-2/FCGR4 PE (SinoBiological, 50036R012P10), CD11b FITC (eBiosciences, 11011281), CD45 AF700 (BioLegend, 103127).
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7

Isolation and Phenotyping of Mouse Corneal Macrophages

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Mouse eyeballs were collected and stored in Hanks’ solution. The corneas were dissected and cut into pieces along the corneal limbus using microscissors. Each corneal tissue was placed in 100 µL of liberase (0.04 mg/mL; Roche, Basel, Switzerland) and heated in a water bath at 37°C for 60 minutes, with a gentle shock exerted every 15 minutes. Then, the undigested tissues were removed using cell-strainer filters. Macrophages cultured in vitro and molar mouse spleen cells were also filtered using a filter. The cell suspension was finally collected in Mouse Fc Block (BD Pharmingen, Franklin Lake, NJ, USA) for 15 minutes at 4°C, and then incubated with fluorescein-conjugated anti-mouse antibodies for 20 minutes at 4°C. Flow cytometry was performed using a flow cytometer (Beckman Coulter, Krefeld, Germany) and analyzed using FlowJo software. The gate was set on the CD45+ population. The main antibodies used were CD 45-PERCP, F4/80-PE-cy7, CD206-FITC and CD 86-PE (Biolegend, San Diego, CA, USA). All experiments were performed in triplicate.
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8

Tumor Dissociation and Immune Cell Analysis

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Explanted tumors were immediately transferred to RPMI1640-containing plates on ice and cut into 2–4mm pieces using scalpel. An enzymatic digestion was then performed during 30min at 37°C in medium containing Dispase II (1 mg/ml; Roche), Collagenase I (1mg/ml; Sigma) and DNAse I (0.01%; Roche). Samples were passed through a 70 μm-cell strainer, centrifuged, resuspended in medium and passed through a 40 μm-cell strainer. After one more washing step, cells were resuspended in FACS buffer (PBS containing 3% FCS and 2mM EDTA) and incubated with CD16/CD32 Fc Block (BD) before staining with the following specific antibodies (or their corresponding isotype controls): CD45-APC, CD11b-BV570, MHCII-FITC, CD163-PE, Ly6G-PerCP-Cy5.5, F4/80-PE-Cy7 and Ly6C-APC-Cy7, for 20min on ice (all antibodies from Biolegend). Finally, cells were washed and resuspended in FACS buffer containing 1 μg/ml DAPI and measured at a FACS Canto II (BD).
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9

Multicolor Flow Cytometry Analysis

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Single cell suspensions were prepared from spleens and pancreatic lymph nodes by disaggregation through 70 μm filters. The number of cells obtained from spleens and pancreatic lymph nodes were determined by flow cytometry by including AccuCount beads (Sphereotech, Lake Forest, IL) in the antibody-stained cell suspensions. The following antibodies were purchased from Biolegend (Nordic Biosite, Täby, Sweden): CD11b-Alexa700, Ly6G-APC-Cy7, F4/80-PE-Cy7, streptavidin Brilliant Violet 605. The following antibodies were purchased from BD Biosciences (San Jose, Ca, USA): CD19-PerCP-Cy5.5, Ly6C-biotin, SiglecF-PE. Prior to surface staining, cells were incubated with the 2.4G2 (anti-CD16/CD32) antibody to prevent unspecific binding. Cells were then stained with the above-mentioned antibodies in FACS buffer (PBS supplemented with 5% fetal calf serum and 0.05% NaN3 (Sigma-Aldrich, St. Louis, MO). Fixable viability dye e-Fluor506 (eBioscience) was used for detecting and excluding dead cells from the analyses. Cells were analyzed using an LSRII flow cytometer (BD Biosciences) and FlowJo software (Tree Star, Ashland, OR).
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10

Multicolor Flow Cytometry Analysis

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Primary antibodies used in this study: F4/80 PE-Cy7 (rat, 123114, 1:200; BioLegend), CD45 FITC (rat, 11-0451, 1:200; eBioscience), CD11b PE-Cy7 ( rat, 25-0112-82, 1:200; eBioscience), CD45 APC (rat, 47-0451, 1:200; eBioscience), CD45 APC-eFluor 780 (rat, 47-0451-82, 1:200; eBioscience), Ly6G APC (17-9668-80, rat, 1:200; eBioscience), CD11b APC (rat, 17-0112-81, 1:200; eBioscience), CD3 FITC (rat, 11-0032-82, 1:200; eBioscience), and CD19 APC-eFluor 780 (rat, 47-0193-80, 1:200; eBioscience). After that, the cells were washed and resuspended in PBS, followed by staining in DAPI (Vector Laboratories) at 4°C for 5 min to exclude dead cells. Live cell analysis was performed by Beckman Coulter CytoFLEX S, Thermo Attune NxT, FACSAria SORP, and BD FACSAria Fusion. The FACS data were analyzed with the FlowJo software.
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