The largest database of trusted experimental protocols

166 protocols using fjk 16

1

Exosome-Mediated Regulation of T-Cell Proliferation

Check if the same lab product or an alternative is used in the 5 most similar protocols
To stimulate Tregs or effector CD4+ T-cell proliferation, 96 round-bottom plate were coated and incubated overnight at 4° with 10µg/ml anti CD3 antibody. CFSE-stained T-cells were added with or without EXO 108/ml to the plate in complete RPMI 1640 media containing 10µg/ml anti CD28 antibody and incubated at 37° and 5% CO2 for 5days. In some experiments, TGFB1 and IL10 neutralizing antibodies were added. T-cell proliferation was assessed by CFSE dilution using flowcytometry analysis by gating on the CD4+ cells. Regulatory T-cells (Tregs) were identified by gating on double positive cells for FOXP3 (FJK-16s, Thermo fisher Scientific) and CD25 (PC61.5, Thermo fisher Scientific), in CD4+ (GK1.5, Thermo fisher Scientific), population while T-helper 17 induction was identified by measuring IL17 median fluorescent intensity in CD4 population by using anti IL7 Antibody (eBio17B7, Thermofisher scientific), followed by flow cytometry. Supernatants were analysed for IL17 by ELISA (BMS6001, Thermo fisher Scientific). Western blot was used to assess the expression of FOXP3 using antiFOXP3 (FJK-16s, Thermo fisher Scientific).
+ Open protocol
+ Expand
2

Multicolor Flow Cytometry Phenotyping

Check if the same lab product or an alternative is used in the 5 most similar protocols
Monoclonal antibodies (mAbs) against CD4 (1:200, GK1.5), CD11b (1:200, M1/70), CD11C (1:200, HL3), CD25 (1:200, PC61), CD80 (1:200, 16-10A1), CD86 (1:200, GL1), and Gr-1 (1:200, RB6-8C5); and I-Ab (MHC class II) (1:200, AF6-120.1), IFN-γ (1:200, XMG1.2), propidium iodide (PI) (1:200), annexin V (1:200), and Ly6-G (1:200, 1A8), B7-H1 (1:200, MIH5) were purchased from BD Biosciences (San Jose, CA, USA). The mABs against CD3 (1:200, 17A2), CD40 (1:200, 3/23), F4/80 (1:200, BM8), and Ly6-C (1:200, HK1.4) were purchased from BioLegend (San Diego, CA, USA). Foxp3 (1:200, FJK-16s) was purchased from Invitrogen (San Diego, CA, USA). Intracellular staining protocols for regulatory T-cells were followed for Foxp3 staining. For carboxyfluorescein succinimidyl ester (CFSE) labeling, splenic T-cells (107/mL) from BALB/c mice were incubated with 0.5 µM CFSE (Invitrogen, San Diego, CA, USA) for 10 min at room temperature. A flow analysis was performed using the BD FACSCanto II flow cytometer (BD Bioscience, Franklin Lakes, NJ, USA).
+ Open protocol
+ Expand
3

Immunohistochemical Analysis of Immune Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
Tissue blocks were fixed in 10% formalin. After paraffin embedding, 3-μm sections were subjected to staining. For the cell number counts, 5 randomly selected sites at 400× magnification (high-power field) were evaluated by use of light microscopy. For immunohistochemistry of CD4, CD8, or FoxP3, the sections were deparaffinized in xylene and rehydrated before antigen retrieval by boiling in citrate buffer (0.01 M citrate containing 0.5% Tween 20, pH 6.0). The sections were incubated in 10% bovine serum albumin (BSA) in PBS at room temperature for 1 h and then stained with rat anti-CD4 antibody (4SM95, 1:500 dilution; eBioscience, San Diego, CA, USA), anti-CD8 antibody (4SM15, 1:500 dilution; eBioscience), or anti-FoxP3 antibody (FJK-16s, 1:200 dilution; Invitrogen, Waltham, MA, USA) overnight at 4 °C, followed by biotinylated anti-rat IgG antibody (1:500; Vector Laboratories, Burlingame, CA, USA) and Vectastain ABC reagent (Vector Laboratories) at room temperature for 60 min and 30 min, respectively. Finally, the sections were stained by the use of a DAB Peroxidase Substrate Kit (Vector Laboratories) before imaging. For detection of apoptotic cells, a TumorTACS in Situ Apoptosis Detection Kit (Trevigen, Gaithersburg, MD, USA) was used according to the manufacturer’s instructions.
+ Open protocol
+ Expand
4

Immunophenotyping of T Cell Subsets

Check if the same lab product or an alternative is used in the 5 most similar protocols
Immunofluorescence antibodies were used as purchased. The 0.1% flow staining buffer was formulated by adding 0.1% bovine serum albumin (VWR, Radnor, PA), 2mM Na2EDTA (VWR, Radnor, PA) and 0.01% NaN3 (VWR, Radnor, PA) in DI H2O. Flow cytometry was completed by following the manufacturer's guidance of the Attune NXT Flow cytometer (ThermoFisher Scientific, Waltham, MA, USA) in Arizona State University’s flow cytometry core. The following immunofluorescence antibodies were utilized in the flow cytometry studies: MHC-Tetramer: - I-A(q) bovine collagen II 271-285 GEPGIAGFKGEQGPK (NIH Tetramer Core Facility), CD4 (RM4-5, 566407, BD Biosciences), CD8 (53-6.7, 564983, BD Bioscience), CD25 (PC61, 552880, BD Biosciences), CD44 (IM7, 566200, BD Biosciences), Tbet (4B10, 644835, BioLegend), GATA3 (L50-823, 565449, BD Biosciences), RORyT (Q31-378, 564722, BD Biosciences), Foxp3 (FJK-16s, 48-5773-82, Invitrogen) and Ki67 (SolA15, 11-5698-82, Invitrogen).
+ Open protocol
+ Expand
5

Immunophenotyping of Murine Lymphocytes

Check if the same lab product or an alternative is used in the 5 most similar protocols
Lungs were excised, minced, and enzymatically digested. Lymphocytes were enriched using a histopaque gradient, diluted to 2 × 106/100 μL, and incubated with a nonspecific binding blocking reagent cocktail of anti-mouse CD16/CD32 (2.4G2), normal mouse, and normal rat serum (Jackson ImmunoResearch) for 10 minutes. Cells were then stained with fluorochrome-labeled antibodies against mouse CD4 (BD Biosciences catalog 740208; clone RM4-5) and CD25 (BD Biosciences catalog 551071; clone PC61), then fixed prior to intracellular staining for the mouse transcription factors Gata3 (BioLegend catalog 653810; clone 16E10A23), T-bet (BioLegend catalog 644817; clone 4B10), RORγt (BD Biosciences catalog 562684; clone Q31-378), and Foxp3 (Invitrogen 48-5773-82; clone FJK-16s). In some experiments, donor CD45.1 cells and recipient CD45.2 cells were identified by staining with antibodies against mouse CD45.1 (eBioscience catalog 12-0453-81; clone A20) and CD45.2 (BD Pharmingen catalog 553772; clone 104). Cells were evaluated using an LSR II flow cytometer (BD Biosciences), and data were analyzed using FlowJo software, version 9.6 (Tree Star).
+ Open protocol
+ Expand
6

Quantifying MDSC and Treg in Tumor-bearing Mice

Check if the same lab product or an alternative is used in the 5 most similar protocols
Splenocytes of TC-1 tumor-bearing, cisplatin and/or AnxA5 treated C57BL/6 mice (5 mice per group) were harvested on day 18 following tumor challenge. To assess the MDSCs population, cells stained with PE-conjugated anti-CD11b (M1/70 /invitrogen) (1:100 dilution) and FITC-conjugated anti-Gr1 antibodies(RB6-8C5/invitrogen) (1:100 dilution). To assess the presence of regulatory T cells, cells were stained with PE-cy7-conjugated anti-CD4(RM4-5/invitrogen) (1:100 dilution) and APC-conjugated anti-CD25 antibodies (PC61.5/invitrogen) (1:100 dilution) at 4 °C for 30 min, washed with PBS, incubated in Fixation/Permeabilization working solution at 4 °C for 20 min, and stained for PE-conjugated anti-Foxp3 antibodies (FJK-16S/invitrogen) (1:100 dilution). All samples were analyzed by FACSCalibur flow cytometer. The samples were first gated for singlets by FSC-H and FSC-A as well as for living cells by side scatter area and forward scatter area, followed by analysis of gated lymphocyte populations, using the CellQuest software (Becton Dickinson, San Jose, CA).
+ Open protocol
+ Expand
7

Tumor Immune Cell Phenotyping by Flow Cytometry

Check if the same lab product or an alternative is used in the 5 most similar protocols
For ow cytometry analysis, the harvested tumors from each group were minced and incubated for 1 h at 37°C in a digestion buffer comprising 2 mg/ml collagenase D (Roche) and 40 μg/ml DNase I (Roche). Cell suspensions were ltered through a 70 μm cell strainer (Corning) and incubated for 3 min at room temperature in ACK lysis buffer (Gibco) to remove the cell clumps and red blood cells. After washing with FACS buffer (1% FBS in PBS), the cells were ltered through a nylon mesh. Next, the cells were incubated on ice for 30 min in Fixable Viability Dye eFluor TM 450 (Invitrogen) to exclude the dead cells before antibody staining. Then, the cells were washed with FACS buffer and incubated on ice for 30 min in FACS buffer with surface antibodies targeting CD45 (30-F11, Invitrogen), CD3 (17A2 or 145-2C11, Invitrogen), CD8a (53-6.7, Invitrogen), CD4 (RM4-5, Invitrogen), PD-1 (J43, Invitrogen), CD25 (PC61.5, Invitrogen), ICOS (7E.17G9, Invitrogen), CD11b (M1/70, Invitrogen), Ly-6G (RB6-8C5, Invitrogen), F4/80 (BM8, Invitrogen), or Ly-6C (HK1.4, Invitrogen). Cells were further permeabilized using a Foxp3 Staining Buffer kit (Invitrogen) and stained for Foxp3 (FJK-16s, Invitrogen), iNOS (CXNFT, Invitrogen), or Arginase 1 (A1exF5, Invitrogen). The stained cells were analyzed using a CytoFLEX ow cytometer (Beckman Coulter), and the data were analyzed with the FlowJo software (Tree Star Inc.).
+ Open protocol
+ Expand
8

Immunohistochemical Analysis of Colonic Sections

Check if the same lab product or an alternative is used in the 5 most similar protocols
In situ immunohistochemical analysis of colonic paraffin sections was performed as described previously [13 (link), 17 (link), 18 (link), 23 (link), 24 (link)]. In brief, primary antibodies against cleaved caspase-3 (Asp175, Cell Signaling, USA, 1:200), CD3 (#N1580, Dako, Denmark, dilution 1:10), FOXP3 (FJK-16s, eBioscience, 1:100), B220 (eBioscience, 1:200), and F4/80 (# 14–4801, clone BM8, eBioscience, San Diego, CA, USA, 1:50) were used [13 (link)]. For each animal, the average number of positively stained cells within at least six high power fields (HPF, 400 x magnification) were determined microscopically by a double-blinded investigator [13 (link)].
+ Open protocol
+ Expand
9

Flow Cytometric Analysis of Immune Cells in CHIKV-Infected Mice

Check if the same lab product or an alternative is used in the 5 most similar protocols
Spleen, popliteal lymph node (pLN) and joint footpad of CHIKV-infected mice were harvested at 6 dpi and 7 dpi. Isolation of splenocytes, pLN and joint footpad cells were processed as described4 (link)21 (link)26 (link). Isolated cells from spleen, joint footpad and pLN were first stained with Live/dead Fixable Aqua Dead Cell Stain Kit (1:400) (Life Technologies) for 20 min. Cell were then washed and resuspended in staining buffer (2% fetal bovine serum in PBS). Staining was performed using rat anti-CD45 (30-F11, BD Pharmingen), rat anti-CD4 (RM4–5, BD Pharmingen), rat anti-CD3 (17A2, Biolegend), rat anti-CD25 (PC61.5, eBioscience), hamster anti-CTLA-4 (UC10-4B9, eBioscience) and rat anti-CD44 (IM7, eBioscience) antibodies for 15 min. Stained cells were then washed with PBS and fixed using IC Fixation Buffer (eBioscience). Intracellular staining of rat anti-Foxp3 (FJK-16s, eBioscience) was done according to manufacturer’s instructions. Data acquisition and analyzes were done as described above.
+ Open protocol
+ Expand
10

Quantitative Immunohistochemical Analysis of Intestinal Inflammation

Check if the same lab product or an alternative is used in the 5 most similar protocols
In situ immunohistochemical analysis of ileal and colonic paraffin sections was performed as previously described (25 (link)–28 (link)). Primary antibodies against cleaved caspase-3 (Asp175, Cell Signaling, Beverly, MA, USA, 1:200), Ki67 (TEC3, Dako, Glostrup, Denmark, 1:100), CD3 (#N1580, Dako, 1:10), Foxp3 (FJK-16s, eBioscience, San Diego, CA, USA, 1:100), B220 (eBioscience, 1:200), and F4/80 (# 14-4801, clone BM8, eBioscience, 1:50) were used. For each animal, the average number of positively stained cells within at least six high power fields (HPF, 400× magnification) was determined microscopically by an independent blinded investigator.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!