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60 protocols using cobas 8000 system

1

Metabolic Surgery Lipid and Liver Enzyme Profiling

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Following an overnight fast, blood samples were drawn prior to anesthesia before metabolic surgery and were immediately processed for biochemical measurements by a CLIA-standardized laboratory (Quest Diagnostics, St. Louis, MO, Lic.#26D0652092), according to standard procedures. Lipid measurements [total cholesterol (TC), triglycerides (TG), low-density lipoprotein cholesterol (LDLc), high-density lipoprotein cholesterol (HDLc)] were performed via auto-analyzer (Roche Cobas 8000 System, CV 0.6-0.9%, Indianapolis, IN) using electrochemiluminescent immunoassay. Liver enzymes [aspartate transaminase (AST), alanine aminotransferase (ALT), and alkaline phosphatase (ALP)] were measured using UV Absorbance (Roche Cobas 8000 System, CV 0.5-3.2% for AST and 0.5-3.1% for ALT, Indianapolis, IN).
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2

Biomarkers for Early Sepsis Detection

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The biomarkers included in the analysis were serum IL-6, CRP and PCT. Biomarker levels were measured by the department of Clinical Chemistry and were retrospectively queried from the laboratory information system. Blood samples were taken at the time of the initial sepsis suspicion (0 h).
CRP levels were measured using a turbidimetric method (C502, Cobas 8000 system, Roche Diagnostics, Rotkreuz, Switzerland). PCT and IL-6 were both measured using Electro-Chemi Luminescent Immuno Assay (ECLIA) tests (E801, Cobas 8000 system, Roche Diagnostics, Rotkreuz, Switzerland).
Plasma levels of CRP, PCT and IL-6 were routinely determined as part of a diagnostic local workup protocol whenever sepsis was suspected in infants. No other cytokines were included in this protocol. At our center, we use heart rate observation (HeRO) monitoring in preterm infants as an early warning score for LONS [18 ]. According to local protocol, clinicians can consider to determine chemical biomarkers when the HeRO score is increased. Blood cultures are drawn and antibiotic treatment is started when the neonate shows evident clinical signs of sepsis or when CRP, PCT or IL-6 levels are increased.
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3

Comprehensive Thyroid and Liver Evaluation

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Venous blood was collected in the morning following a 12-hour fast. TSH, fT3, fT4, aTPO, aTG, TBII, HBs-Ag, HBs-Ab, HBc-Ab, and HCV-Ab were measured in serum using an electrochemiluminescence immunoassay (cobas 8000 System, Roche Diagnostics, Switzerland). Concentrations of AST and ALT were measured by the standard reaction of NADH oxidation, total bilirubin by calorimetric method (cobas 8000 System, Roche Diagnostics, Switzerland). The level of serum autoantibodies (ANA1, ASMA, AMA, and anti-LKM) was measured using an indirect immunofluorescence method (EUROIMMUN tests, Sprinter XL Analyzer, EUROIMMUN, Germany).
All methods were calibrated and controlled according to manufacturers' recommendations. Laboratory normal ranges are presented in Table 1.
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4

Neonatal Sepsis Biomarker Evaluation

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The following patient characteristics were obtained from clinical charts: sex, gestational age, birthweight, postnatal age at moment of blood culture withdrawal. Serum IL-6, PCT (both measured with E801, cobas® 8000 system, Roche Diagnostics, Rotkreuz, Switzerland), and CRP (measured with C502, cobas® 8000 system, Roche Diagnostics, Rotkreuz, Switzerland) levels at moment of sepsis suspicion were queried from the laboratory information system.
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5

Plasma Clinical Chemistries and Anemia Characterization

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Plasma clinical chemistries were analyzed as previously described [3 ]. Iron, TIBC, and ferritin were analyzed at the Kansas State Veterinary Diagnostic Laboratory by colorimetric analysis on the Roche Cobas Mira (Roche Diagnostics, Indianapolis, Indiana 46250) per the manufacturer’s protocol. Plasma clinical chemistries were directly measured using the Roche Cobas 8000 system (Roche Diagnostics, Indianapolis, Indiana 46250) per the manufacturers’ protocol. Total insulin was analyzed at ARUP Laboratories by ultrafiltration/quantitative chemiluminescent immunoassay on the Siemens ADVIA Centaur Immunoassay system (Siemens Medical Solutions USA, Inc., Malvern, Pennsylvania 19355). Erythrocyte sedimentation rate (ESR) was measured through a technique correlating directly with the Westergren method using the Fisher Healthcare Dispette 2 and reservoirs pre-filled with 0.25mL of 0.9% saline (Thermo Fisher Scientific). Low hemoglobin, the standard definition of anemia, was defined in our study population as animals with hemoglobin at or below the 25th percentile (< 12.5 g/dl) among all animals at baseline. Low-normal hemoglobin was defined as animals greater than the 25th and equal to or lower than the 50th percentile (12.6–13.5 g/dl). These values are consistent with definitions for anemia in humans (< 12–14 g/dl) [19 ].
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6

Quantitative Protein Biomarkers in Urine

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Total protein concentration in urines was determined by Bradford assay (Coomassie Protein Assay Reagent, Pierce). The quantitative ELISA determination of human LYVE-1 (Cat# SEB049Hu, Uscn Life Science Inc.) and human TFF1 (Cat# ELH-LYVE1-001, RayBiotech Inc.) was performed according to the manufacturer’s instructions; human REG1A levels were initially assessed in our laboratory, and afterwards by BioVendor Analytical Testing Service (BioVendor - Laboratorní medicína a.s). Calibration curves were prepared using purified standards for each protein assessed. Curve fitting was accomplished by a four-parameter logistic regression following the manufacturer’s instructions. The limits of detection and the coefficient of variation (CV) for each of the ELISA assays were as follows: LYVE-1 - 8.19 pg/ml, intra-assay CV - 9%, inter-assay CV - 12%, TFF1 - 0.037 ng/ml, intra-assay CV -9%, inter-assay CV - 12%. REG1A - 0.094 ng/ml, intra-assay CV - 9%, inter-assay CV 20%; REG1B- 3.13 pg/ml, intra-assay CV - 3.9%, inter-assay CV - 2.7%. Urine creatinine was measured by the Jaffé method using the Roche Cobas 8000 system (Roche Diagnostics, Mannheim, Germany) and plasma CA19.9 using a Roche Modular E170 instrument according to the routine protocols at the Clinical Biochemistry Laboratory, RLH (London, UK).
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7

Serum Copper Level in Cancer Patients

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Patients’ clinicopathological data were hand-retrieved from the electronic medical records system of SYSUCC. The peripheric blood samples collected at the time of diagnosis and before the initiation of any anti-cancer treatment were obtained from the tumor resource library of SYSUCC. The serum copper level of the participants was measured using the Copper Assay Kit (PAESA chromogenic method) of the Roche cobas 8,000 system (BSBE, Beijing, China).
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8

Serum Biomarkers and Inflammation Ratios

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On the same day, after an overnight fast of 8 h, patients had a forearm venous puncture for blood extraction. Serum was separated prior to intravitreal anti-VEGF treatment. A Sysmex XE-2100 analyzer (Sysmex Corp., Kobe, Japan) measured full blood count, while biochemical analyses occurred on a Roche Cobas 8,000 system (Roche, Chicago, IL, USA) at ZhuJiang Hospital's Laboratory. Specifically, we analyzed lymphocytes, platelets (PLTs), monocytes, neutrophils, glycosylated hemoglobin (HbA1c), creatinine, cholesterol, triglycerides, high-density lipoprotein (HDL), and low-density lipoprotein (LDL). Neutrophil-to-lymphocyte ratio (NLR), PLT-to-lymphocyte ratio (PLR), MLR, and systemic immune-inflammation index (SII) were calculated as ratios: neutrophils-to-lymphocytes, PLTto-lymphocytes, monocytes-to-lymphocytes, and (neutrophils × PLT)-to-lymphocytes.
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9

Comprehensive Immunological Profiling Protocol

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Blood parameters, such as lymphocyte, neutrophil, and erythrocyte counts, were determined using a Sysmex XN-2000 haematology analyser (Sysmex, Tokyo, Japan). Liver, renal and cardiac function indicators such as alanine aminotransferase (ALT), aspartate transaminase (AST), creatinine, uric acid and lactate dehydrogenase were assayed using a Hitachi 7600-210 automatic analyser (Hitachi, Tokyo, Japan). Indexes of infection, C-reactive protein (CRP) and procalcitonin were detected using a Roche Cobas8000 system (Roche, Basel, Switzerland). In addition, cytokines, including IL-2, IL-4, IL-6, IL-10, and TNF-α, were measured via flow cytometry using Cytometric Bead Array (CBA) technology (BD Biosciences, San Jose, USA) [14 (link)].
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10

Preoperative Homocysteine and Postoperative CRP

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We collected 4 ml of venous blood during the insertion of intravenous catheters before the anesthesia and surgery in all participants to measure preoperative plasma concentrations of homocysteine. The blood sample was collected in anticoagulant tubes and was immediately centrifuged to collect the supernatant plasma. The plasma was stored in a −80°C freezer until measurement. Preoperative plasma concentration of homocysteine was determined by using the Roche Cobas 8000 system (Roche Diagnostic, Rotkreuz, Switzerland) with the enzyme cycling method.
Postoperative measurement of blood CRP was part of the clinical care of the patients. Thus, we obtained the postoperative blood CRP concentrations by checking the participants’ medical records. If participants had several postoperative CRP measurements, the concentration of the first postoperative measurement of plasm CRP was used for the final data analysis in the present study. Since the postoperative CRP measurement was part of the routine postoperative clinical care, the time of the postoperative blood collection (i.e., postoperative day) was not fixed on a particular day. Notably, in the clinical laboratory, the postoperative plasma concentrations of CRP were measured using an immunonephelometric method on a Nephelometer BNII (Siemens Healthcare, Germany), measuring a range from 3–200 mg/L.
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