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11 protocols using lps from e coli 026 b6

1

Reagents and Materials for Cell Stimulation Experiments

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Tissue culture media, antibiotics, fetal calf serum (FCS) and NP40 cell lysis buffer (10×) were purchased from Life Technologies (San Giuliano Milanese, Italy); lipopolysaccaride (LPS) (Ultra-Pure LPS-EB from E. coli 0111:B4 strain), zymosan, Pam3CSK4 (VacciGrade™) and polyinosinic-polycytidylic acid (poly(I:C)) (high molecular weight) were from InvivoGen (Cayla-Invivogen Europe, Toulouse, France); BD CytoFix/CytoPerm and CytoFix were from BD Biosciences (SACCO srl, Cadorago (CO), Italy); Ro-106-9920 (Tocris-Cookson, Space Import–export srl, Milan, Italy); poly-l-lysine hydrobromide (mol wt 70,000–150,000), papain, DNase I (bovine pancreas), trypsin inhibitor, l-leucyl-l-leucine methyl ester (L-LME), SB202190, protease inhibitor cocktail, Pefabloc® SC (100 mM), LPS from E. coli 026:B6 (<5 % protein impurities), polymyxin B and all other biochemicals were purchased from Sigma-Aldrich (Milan, Italy) unless noted otherwise; Falcon tissue culture plasticware was purchased from BD Biosciences. Sterilin petri plastic dishes (10 cm Ø) were obtained from Sarstedt (Verona, Italy).
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2

Stimulation of Chicken Toll-like Receptors

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Pam3CSK4 (synthetic triacylated lipoprotein), polyI:C and R848 were purchased from Invivogen (San Diego, California, USA). Synthetic class A CpG ODN 2216 [5′- GGGGGACGA:TCGTCGGGGGG-3′], synthetic class B CpG ODN 2007 [5′- TCGTCGTTGTCGTTTTGTCGTT- 3′], synthetic class B CpG ODN 1826 [ 5′- TCCATGACGTTCCTGACGTT- 3′], synthetic class C CpG ODN 2395 [5′- TCGTCGTTT-TCG-GCGCGCGCCG- 3′], non-CpG ODN [5′ -TGCTGCTTGTGCTTTTGTGCTT- 3′], lipopolysaccharides (LPS) from Escherichia coli 0111:B4 and LPS from E. coli 026:B6 were purchased from Sigma–Aldrich (Oakville, Ontario, Canada). These ligands were selected as they have previously been shown to stimulate chicken TLRs [18] (link), [19] .
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3

Dendritic Cell Maturation Assay

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Dendritic cell maturation was induced at day 7 post differentiation by adding 1.0 µg/mL LPS from E. coli 026:B6 (Sigma) or CBs in 0.5:1, 1:1, and 2:1 ratios (CBs/dendritic cells) for 24 h. After the challenge, the cells were collected and labeled with the following antibodies: anti-mouse-CD11c-PE (clone N418), anti-mouse-CD86-APC (clone GL1), anti-mouse-MHC class II- FITC (clone M5/114.15.2), anti-mouse/rat CD40-FITC (clone HM40-3), and anti-mouse-MHC class I-FITC (clone AF6-88.5.5.3) (eBioscience). The samples were analyzed by flow cytometry using the Accuri C6 Flow Cytometer (BD Bioscience), and the data were processed with the CFlow Plus software.
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4

Co-culture of Macrophages and MSCs

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The RAW 264.7 macrophage cell line was obtained from Sigma-Aldrich (USA) and grown to confluence in DMEM containing l-glutamine (2 mM), penicillin (100 IU/mL), streptomycin (100 mg/mL), and 10% FBS at 37 °C in a 5% CO2 humidified incubator. Macrophages were plated in six-well plates at a concentration of 3 × 105 cells in 2 mL per well. After this, MSCs were also co-cultured in a proportion 1:10 with the macrophages in the same well. After 24 h, macrophages and macrophages co-cultured with MSCs were stimulated with LPS from E. coli 026:B6 (1 μg/mL; Sigma-Aldrich) at different times.
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5

Investigating β-Glucans' Impact on Mice

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To test the impact of different forms of β-Glucans on mice, the glucans were administered with and without LPS in mice. Mice were intraperitoneally (ip) administered with 10 mg/kg of LPS from E. coli 026: B6 (Sigma-Aldrich) with or without intravenous (iv) administration (tail vein injection) of the different glucans at 20 mg/kg. Blood samples were collected through the tail vein at several timepoints, and mice were sacrificed at 24 h post-injection by cardiac puncture under isoflurane anesthesia before sample collection.
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6

Autophagy and inflammasome activation

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LPS from E. coli 026:B6 (Sigma-Aldrich) and ATP (Invivogen) were used at concentration of 50 ng/ml and 3 mM for human and 100 ng/ml and 5 mM for murine co-culture studies, respectively. Nigericin (Invivogen) was used at a concentration of 10 µM. To evaluate autophagy response, WT and WAS KO BMDCs or WT and WAS KO THP-1 cells were stimulated with rapamycin (50 nM; Calbiochem) and bafilomycin (160 nM; Thermo Fisher Scientific) alone or in combination. All murine IFNs were from Millipore and human cytokines from Peprotech. BMDCs were stimulated with 500 U/ml IFN for 16 h prior to LPS priming (100 ng/ml) for 3 h, followed by ATP (5 mM) for 30 min.
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7

LPS-induced Cytokine Response in Mice

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Mice were administered an i.p. injection of 35 µg LPS from E. coli 026:B6 (Sigma Aldrich) diluted into 500 µL saline. This quantity of LPS is in the range of the protective amount [see Ref. (37 (link))]. After 8 h, submandibular blood and tissues were collected from each animal. Blood was collected using Goldenrod lancets (Medipoint, Inc.) in K2 EDTA microtainers (BD Biosciences) and centrifuged at 10,000 × g for 5 min. Plasma was removed, aliquoted, and stored at −80°C until use. ELISAs for IL-18 (eBioscience) and IFN-γ (BioLegend) were performed according to manufacturers’ recommendations.
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8

Cockroach Allergen Extraction and Sensitization

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Lyophilized whole body German cockroach extract was purchased from Greer laboratories (XPB46D3A4, Lot # 259066) and resuspended in PBS to a protein concentration of 2 mg/ml. Low endotoxin ovalbumin was purchased from Worthington Biochemical Corporation (LS003061). LPS from E. coli 026:B6 was purchased from Sigma (L2654). Human IL-1ra (anakinra) was purchased from the Virginia Mason hospital pharmacy. Recombinant GM-CSF was purchased from Peprotech (315-03).
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9

Macrophage Differentiation and Cytokine Profiling

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Human leukemia monocytic cells of the THP-1 cell line (TIB-202 TM; ATCC, Manassas, VA, USA) were cultured in RPMI 1640 (Invitrogen, ThermoFisher Scientific, Waltham, MA, USA) supplemented with 10% heat-inactivated fetal bovine serum (Invitrogen), 100 U/mL penicillin, 100 µg/mL streptomycin (Invitrogen), and 50 µM 2-mercaptoethanol. After that, THP-1 cells were incubated with 100 ng/mL of phorbol 12-myristate 13-acetate (PMA) (Sigma-Aldrich) for macrophage differentiation [30 (link)]. Then, the differentiated THP-1 cells were stimulated with RPMI (untreated), LPS from E. coli 026:B6 (100 ng/mL) (Sigma-Aldrich), interleukin 4 (IL-4) (20 ng/mL), and 20% tumor-conditioned media prepared by centrifuging 5 × 106 CaCO2 and HepG2 cells (cancer cell lines) incubated in the presence or absence of BAM15 (50 ng/mL) [31 (link)]. At 24 h after stimulation, supernatants were collected for cytokine quantification using ELISA (Invitrogen), and the cells were harvested for quantitative real-time polymerase chain reaction (PCR).
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10

Cockroach Allergen Extraction and Sensitization

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Lyophilized whole body German cockroach extract was purchased from Greer laboratories (XPB46D3A4, Lot # 259066) and resuspended in PBS to a protein concentration of 2 mg/ml. Low endotoxin ovalbumin was purchased from Worthington Biochemical Corporation (LS003061). LPS from E. coli 026:B6 was purchased from Sigma (L2654). Human IL-1ra (anakinra) was purchased from the Virginia Mason hospital pharmacy. Recombinant GM-CSF was purchased from Peprotech (315-03).
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