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9 protocols using ethidium etd bromide

1

Evaluating Connexin Mimetic Peptides in Cell Cultures

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HEPES, water (W3500), Dulbecco′s Modified Eagle Medium (DMEM), 4,6,-O-ethylidene-D-glucose (ETDG), anti-GFAP polyclonal antibody, cytosine arabinoside (Ara-C), LaCl3 (La3+), cytochalasin B (Cyto-B) and ethidium (Etd) bromide were purchased from Sigma-Aldrich (St. Louis, MO, USA). Fetal bovine serum (FBS) was purchased from Hyclone (Logan, UT, USA), whereas penicillin, 2-(N-(7-nitrobenz-2-oxa-1,3-diazol-4-yl)amino)-2-deoxyglucose (2-NBDG), streptomycin, Propidium (Prd) iodide, diamidino-2-phenylindole (DAPI), YO-PRO-1, goat anti-mouse Alexa Fluor 488/555 and goat anti-rabbit Alexa Fluor 488/555 were from Thermo Fisher Scientific (Waltham, MA, USA). IL-1β and TNF-α were obtained from Roche Diagnostics (Indianapolis, MI, USA). Normal goat serum (NGS) was purchased from Zymed (San Francisco, CA, USA). Anti-Cx43 monoclonal antibody (610061) was obtained from BD Biosciences (Franklin Lakes, NJ, USA). The mimetic peptides gap19 (KQIEIKKFK, intracellular loop domain of Cx43), gap19I130A (KQAEIKKFK, negative control), Tat-L2 (YGRKKRRQRRR-DGANVDMHLKQIEIKKFKYGIEEHGK, intracellular loop domain of Cx43), and Tat-L2H126K/I130N (YGRKKRRQRRR-DGANVDMKLKQNEIKKFKYGIEEHGK, negative control) were obtained from Genscript (Piscataway, NJ, USA).
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2

Calcium Signaling Regulation Assay

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Ethidium (Etd) bromide, LaCl3, adenosine triphosphate disodium (Na2ATP), cyclopiazonic acid (CPA, sarcoplasmic reticulum Ca2+-pump inhibitor), carbonyl cyanide 3-chlorophenylhydrazone (CCCP, H+ ionophore and uncoupler of oxidative phosphorylation in mitochondria), U73122 [Phospholipase C (PLC) inhibitor], carbenoxolone (CBX) and streptomycin were obtained from Sigma-Aldrich (St. Louis, MO, USA). Fura-2-AM was obtained from Molecular Probes (Eugene, OR, USA) and gentamicin sulfate from Invitrogen Life Technologies (Carlsbad, CA, USA). Polyclonal anti-P2Y2, -P2Y4, and -P2Y6 receptor antibodies, as well as goat anti-rabbit and anti-mouse secondary antibodies conjugated to horseradish peroxidase, were obtained from Santa Cruz Biotechnology Inc. (Santa Cruz, CA, USA). The mimetic peptide Gap26 (sequence: N-VCYDKSFPISHVR-C) was synthesized by Beijing SBS Genetech Co. Ltd. (Beijing, China).
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3

Mimetic Peptide Characterization Protocol

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The mimetic peptides gap19 (KQIEIKKFK, intracellular loop domain of Cx43), TAT-L2 (YGRKKRRQRRRDGANVDMHLKQIEIKKFKYGIEEHGK, second intracellular loop domain of Cx43) and 10panx1 (WRQAAFVDSY, first extracellular loop domain of Panx1) were obtained from GenScript (Piscataway Township, NJ, USA). Ethanol was obtained from Merck Millipore (Darmstadt, Germany). HEPES, ns-398, sc-560, L-N6, SB203580, lanthanum (La3+), anti-glial fibrillary acidic protein (GFAP) monoclonal antibody, BAPTA-AM, carbenoxolone (CBX), ethidium (Etd) bromide and probenecid were purchased from Sigma-Aldrich (St. Louis, MO, USA). Goat anti-mouse Alexa Fluor 488/555 and Hoechst 33342 were obtained from Thermo Fisher (Waltham, MA, USA). Normal goat serum (NGS) was purchased from Zymed (San Francisco, CA, USA).
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4

OVA-induced Allergy Response Protocol

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RPMI 1640, DMEM, and IMDM culture mediums; penicillin; streptomycin; and fetal bovine serum (FBS) were obtained from Gibco®Invitrogen (Carlsbad, CA, USA). Albumin from chicken egg white (OVA), 2-mercaptoethanol, Probenecid (Pbc), carbenoxolone (Cbx), suramin, ethidium (Etd) bromide, and 4′,6-diamidino-2-phenylindole (DAPI) were purchased from Sigma Chemical (St. Louis, MO, USA). 10Panx1 (WRQAAFVDSY) and Gap26 (FSVYWAQADR) mimetic peptides were obtained from SBSBIO (Beijing, China). Mouse monoclonal IgE antibody against OVA was purchased from AbD Serotec (Kidlington, UK).
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5

Peptide-mediated Cx43 Hemichannel Regulation

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Gap26, TAT-L2 and 10panx1 peptides were obtained from Genscript (New Jersey, USA). HEPES, DMEM, DNAse I, poly-L-lysine, CPP, A74003, MRS2179, brilliant blue G (BBG), oATP, ethidium (Etd) bromide, and probenecid (Prob) were purchased from Sigma-Aldrich (St. Louis, MO, USA). Fetal calf serum (FCS) was obtained from Hyclone (Logan, UT, USA). Penicillin and streptomycin were obtained from Invitrogen (Carlsbad, CA, USA). Normal goat serum (NGS) was purchased from Zymed (San Francisco, CA, USA). Cx43E2, a Cx43 hemichannel antibody to the second extracellular loop was kindly provided by Dr. Jean Jiang, Department of Biochemistry, University of San Antonio, USA (Siller-Jackson et al., 2008 (link)).
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6

Angiotensin II Signaling Pathways

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Angiotensin II (AngII) was obtained from Alomone (Jerusalem, Israel); Fasudil, Y-27632, ethidium (Etd+) bromide, lanthanum (La3+) chloride, Losartan and malondialdehyde (MDA) were obtained from Sigma-Aldrich (St. Louis, MO, USA); Gap27—a peptide that inhibits Cx43 HCs—was obtained from NeoMPS, SA (Strasbourg, France); A740003—a specific P2X7Rblocker—was obtained from Tocris Biosciences (Bristol, UK). The monoclonal anti-α-tubulin antibody was obtained from Sigma-Aldrich (St. Louis, MO, USA); the polyclonal anti-phosphorilated-MYPT1 (Thr696) antibody was obtained from Merck Millipore (Darmstadt, Germany); the monoclonal anti-MYPT1 antibody was obtained from BD Transduction Laboratories (San José, CA, USA); the monoclonal anti-unphosphorylated Cx43 antibody was obtained from Invitrogen (Carlsbad, CA, USA); a polyclonal anti-Panx1 antibody described previously [65 (link)] was used; the polyclonal anti-P2X7R antibody was obtained from Abcam (Cambridge, UK); anti-mouse and anti-rabbit secondary antibodies conjugated to horseradish peroxidase were from Santa Cruz Biotechnology Inc. (Santa Cruz, CA, USA).
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7

Examining Connexin and Pannexin Interactions

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Gap26, Gap19; YGRKKRRQRRRDGANVDMHLKQIEIKKFKYGIEEHGK (TAT-L2) and 10panx1 peptides were obtained from Genscript (New Jersey, USA). HEPES, DMEM, DNAse I, poly-L-lysine, LN-6, ns-398, sc-19220, polyclonal anti-Cx43 antibody, 3-(2-carboxypiperazin-4-yl)propyl-1-phosphonic acid (CPP), Brilliant blue G (BBG), oATP, ethidium (Etd) bromide, and probenecid (Prob) were purchased from Sigma-Aldrich (St. Louis, MO, USA). Fetal calf serum (FCS) was obtained from Hyclone (Logan, UT, USA). Penicillin, streptomycin, polyclonal anti-Panx1 antibody (PI488000), goat anti-mouse Alexa Fluor 488 and goat anti-mouse Alexa Fluor 555 were obtained from Invitrogen (Carlsbad, CA, USA). Anti-NeuN monoclonal antibody was obtained from Chemicon (Martinsried/Munich, Germany). Normal goat serum (NGS) was purchased from Zymed (San Francisco, CA, USA). Anti-GFAP monoclonal antibody was purchased from ICN Chemicals, (Irvine, CA). Anti-Cx43 monoclonal antibody was obtained from BD Biosciences (Franklin Lakes, NJ, USA).
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8

Lipid Signaling Pathway Characterization

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Linoleic acid (LA), GW9508, ethidium (Etd+) bromide and lanthanum (La3+) chloride were obtained from Sigma-Aldrich (St. Louis, MO, USA); Akt inhibitor VIII (AKTi) from Calbiochem (Merck KGaA, Darmstadt, Germany); GPR40 and Negative control siRNA (Neg siRNA) were obtained from Qiagen (Valencia, CA, USA), polyclonal antibodies anti-GPR40 and GPR120 from Abcam (Cambridge, MA, USA). A custom made previously described anti-pS373 Cx43 antibody was used [36 (link)]. Monoclonal antibody anti-α-tubulin was obtained from Sigma-Aldrich, and anti-mouse and anti-rabbit secondary antibodies conjugated to horseradish peroxidase were from Santa Cruz Biotechnology Inc (Santa Cruz, CA, USA).
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9

Regulation of Connexin 43 Phosphorylation

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TNF-α and IL-1β were obtained from Alomone (Jerusalem, Israel); Fasudil, Y-27632, ethidium (Etd+) bromide and lanthanum (La3+) chloride were obtained from Sigma-Aldrich (St. Louis, MO, USA). TBARS assay kit was obtained from Cayman Chemicals (Ann Arbor, MI, USA), and CellTiter96® Non-Radioactive Cell Proliferation Assay was obtained from Promega (Madison, WI, USA). The mimetic peptides gap19 (KQIEIKKFK, intracellular loop domain of Cx43) and TAT-L2 (YGRKKRRQRRRDGANVDMHLKQIEIKKFKYGIEEHGK, second intracellular loop domain of Cx43) were obtained from GenScript (Piscataway Township, NJ, USA) [25 (link)]. The monoclonal anti-α-tubulin antibody was purchased from Sigma-Aldrich (St. Louis, MO, USA). The polyclonal anti-phosphorylated-MYPT1 (Thr696) antibody was obtained from Merck Millipore (Darmstadt, Germany). The monoclonal anti-MYPT1 antibody was purchased from BD Transduction Laboratories (San José, CA, USA). The monoclonal anti-unphosphorylated Cx43 antibody was obtained from Invitrogen (Carlsbad, CA, USA). Anti-mouse and anti-rabbit secondary antibodies conjugated to horseradish peroxidase were from Santa Cruz Biotechnology Inc. (Santa Cruz, CA, USA).
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