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16 protocols using tβrii

1

Fibroblast Cell Culture and TGF-β Signaling

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Human fetal lung fibroblast (MRC5) cell lines were propagated in EMEM media (Gibco, Rockville, IL, USA) with 10% FBS (Hyclone, Logan, UT, USA), and 1% penicillin/streptomycin antibiotic mix (Lonza, Allendale, NJ, USA). The cells were kept in a 37 °C humidified incubator with 5% carbon dioxide. Immobilized protein A/G beads, FN, α-SMA, TβRI, HA tag, USP11, V5 tag, TβRII, and control IgG antibodies, USP11 siRNA (pools of three to five siRNA), and control siRNA were from Santa Cruz Biotechnology (Santa Cruz, CA, USA). Phospho-SMAD2, phospho-SMAD3, total SMAD2, SMAD3, and ubiquitin antibodies were purchased from Cell Signaling Technology (Danvers, MA, USA). Bleomycin, leupeptin, CHX, MTX, and antibodies against Flag-tag and β-actin were from Sigma-Aldrich (St. Louis, MO, USA). Recombinant TGF-β1 was purchased from Invitrogen (Carlsbad, CA, USA). Proteasome inhibitor MG-132 was from Calbiochem (KGaA, Darmstadt, Germany). DAPI was purchased from ThermoFisher Scientific (Waltham, MA, USA). All materials in highest grades used in the experiments are commercially available.
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2

Western Blot Analysis of EMT Pathway

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Cells were lysed in RIPA lysis buffer with 1% phosphatase and protease inhibitors (Beyotime, China). Same amount (~20ug) of protein was electrophoresed using 10% SDS-PAGE gel and was transferred onto polyvinylidene fluoride (PVDF) membranes (Millipore, Bedford, MA, USA). The membranes were placed in 5% skimmed milk for 1 h on a rotary shaker to block nonspecific binding sites, followed by incubation with primary specific antibodies overnight at 4°C. On the second day, after washing with 1× TBST buffer three times (10 min/time), anti-mouse or anti-rabbit HRP-labeled secondary antibodies were added and incubated at room temperature for 1 h. After washing again, the membranes were subjected to immunoblotting analysis using ECL detection reagent (Beyotime, China). The primary antibodies used in this study were as follows: PTBP3 (#sc-100845, Santa Cruz Biotechnology), EMT antibody sampler kit (#9782, CST), Smad2/3 antibody sampler kit (#12747, CST), PAI-1 (#11907, CST), TβRI (#sc-101574, Santa Cruz Biotechnology), TβRII (#sc-17791, Santa Cruz Biotechnology), Akt (#4691, CST), p-Akt (#4060, CST), MEK (#4694, CST), p-MEK (#9154, CST), Erk (#12950, CST), and p-Erk (#4370, CST).
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3

Antibody-Based Protein Expression Analysis

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Antibodies: Phospho-Smad2 (#3108, Cell Signaling Tech. 1/1000), phospho-Smad3(#9520, Cell Signaling Tech. 1/1000), phospho-Stat3 (#9131, Cell Signaling Tech. 1/1000), phospho-Jak2 (#3771, Cell Signaling Tech. 1/1000), Snail (#3879, Cell Signaling Tech. 1/1000), EEA1 (#C45B10, Cell Signaling Tech. 1/100) and total Stat3(#4904, Cell Signaling Tech. 1/1000) were purchased from Cell Signaling Technology; SMAD2/3 (610843, BD Biosciences, 1/1000), anti-myc (sc789, 1/1000 and 9E10, sc40, 1/1000), TβRI (sc398, 1/500) Lamin B (sc6217, 1/1000) TβRII (sc17792, 1/500), FKBP12 (sc6174, 1/500), GAPDH (sc32233, 1/1000) and GPR50 (sc50590, 1/500) came from Santa Cruz Biotechnology. Monoclonal and polyclonal Flag-Antibodies were used from Sigma-Aldrich (M2-F3165, 1/1000, and F7425, 1/1000). HA (11867423001, 1/1000) and GFP (11814460001, 1/2000) antibodies were used from Roche. Anti-Tubulin was purchased from AbD Serotec (MCA77G, 1/2000). GPR50 antibody7 was produced by Kernov Antibody Services (1/1000)49 (link). Polyclonal Anti GPR50 (H00009248-B01P, 1/500) was purchased from Novus Biologicals. Anti TGFβRI-pS165 (ab112095, 1/500) was purchased from Abcam. All antibodies were employed according to the recommended dilutions for either immunoprecipitation or western blotting.
Reagents: FK506 and SB431542 were purchased from Sigma Aldrich and recombinant TGFβ-1 was purchased from Peprotech.
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4

Protein Analysis by Western Blotting

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Proteins were isolated and protein concentration was measured using BCA protein assay. The proteins were subjected to SDS-PAGE electrophoresis and transferred to polyvinylidene fluoride membrane (Millipore Corp, Massachusetts, USA). After blocking, membranes were incubated with primary antibodies (β-actin, Type I Collagen, Type III Collagen, Smad2/3 and TβRII, Santa Cruz Biotechnology, Dallas, Texas, USA; p-Smad2/3, Cell Signaling Technology, Danvers, USA) overnight at 4 °C followed by incubation with AP-conjugated secondary antibodies (Cell Signaling Technology, Danvers, USA). The proteins were visualised with BCIP/NBT kit (Invitrogen, Carlsbad, CA, USA).
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5

Integrin and Smad Signaling in TGFβ Response

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BSA was from Sigma-Aldrich, type I Collagen (type I Col) was from Invitrogen, TGFβ1 and LAP-TGFβ1 were from R&D Systems. Specific inhibitor of Smad3 (SIS3) was from Santa Cruz Biotechnology [45 (link)]. SIS3 was dissolved in DMSO. We used the following rabbit antibodies (Abs) against: TβRII, ERK1/2, fibronectin (FN), focal adhesion kinase (FAK) and AKT from Santa Cruz Biotechnology; phospho-Smad3 (ser423/425) from Cell Signaling Technology; Smad3 from Zymed; β3 cytoplasmic domain [46 (link)]; β5 cytoplasmic domain and membrane type-1 matrix metalloproteinase (MT1-MMP) from Millipore; and MMP2 from Cell Signaling Technology. This Ab against MMP2 is specific for MMP2 and reacts with pro- and active human MMP2.
C19 goat Ab against β6 cytoplasmic domain and goat IgG was from Santa Cruz Biotechnology.
We used the following mouse (m)Abs against: Smad2 from Invitrogen, tissue inhibitor of metalloproteinases2 (TIMP2) from Abeam, β6 from Chemicon, 10D5, for FACS and immunoprecipitation (IP) and 2A1 for immunoblotting (IB) [12 (link), 47 (link)]. In addition, the following mouse (m)Abs against: αv, L230; β1, TS2/16; β3, AP3, all from Life Technologies; β1, C-18 and Smad4 from Santa Cruz Biotechnology were used.
Non-immune mouse and rabbit IgG (from Sigma-Aldrich) were used as negative controls.
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6

Antibody Validation for Cell Signaling

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These antibodies were used in the present investigation: Kindlin-1 (Millipore, MA), c-myc (Snail (Millipore), E-cadherin (Abcam), N-cadherin (Epitomics), p-Smad3 (Abcam), Smad2 (Epitomics), Smad3 (Epitomics), SARA (Epitomics), TβRI (Santa Cruz, CA), TβRII (Santa Cruz, CA), Vimentin (Epitomics), YY-1 (Santa Cruz, CA), Actin (Santa Cruz), or Flag (Sigma-Aldrich, St. Louis, MO).
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7

TGF-β signaling pathway protocol

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Mv1Lu and NMuMG cells were obtained from ATCC (Manassas, VA). Na [125I] (17 Ci/mg) was obtained from ICN Biochemicals (Irvine, CA). DMEM, high molecular mass protein standards (myosin, 205 kDa; β-galactosidase, 116 kDa; phosphorylase, 97 kDa; bovine serum albumin, 66 kDa), chloramine-T, disuccinimidyl suberate (DSS) and other biochemical reagents were obtained from Sigma (St Louis, MO). TGF-β (TGF-β1) was purchased from Austral Biologicals (San Ramon, CA). Rabbit polyclonal antibodies to caveolin-1 (N-20), early endosome antigen 1 (EEA1), hemagglutinin (HA) epitope [Tsukazaki et al., 1998 (link)], P-Smad2, Smad2, P-Erk1/2, Erk1/2, α-actin, P-JNK, JNK, P-p38, p38, α-tubulin, TβR-I (ALK-5) and TβR-II, and SB-505124 [DaCosta Byfield et al., 2004 (link)] were obtained from Santa Cruz Biotechnology, Inc. (Santa Cruz, CA). TGF-β peptide antagonist [Huang et al., 1997 (link); Huang and Huang, 2005 (link); Singer et al., 2009 (link)] was synthesized by C S Bio Co. (Menlo Park, CA). The luciferase assay system was obtained from Promega (Madison, WI). The TβR-II-HA plasmid was purchased from Addgene (Cambridge, MA). The COL1A2-luc plasmid was constructed as described [Poncelet et al., 1999 (link)]. The SBE4-luciferase reporter plasmid was constructed as described [Jonk et al., 1998 (link)].
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8

Antibody and Plasmid Utilization Protocol

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Antibodies against Smad2/3 and pSmad2/3 antibodies were obtained from Cell Signaling Technology (CST, USA). Antibodies against TEAD1, TβRII, GFP, flag, Ub, GAPDH, c-Cbl siRNA, and TEAD1 siRNA were ordered from Santa Cruz Biotechnology. The secondary fluorescent antibodies and H&E staining kit were ordered from Abcam. Calcein labeling, osmium tetroxide, and lipofectamine 3000 were purchased from Fisher Scientific. Dexamethasone, L-ascorbic acid, and β-glycerophosphate were ordered from Sigma. Plasmids pcDNA3.1-flag and pcDNA3.1-flag-TβRII, GFP-IFT20, HA-Ub were obtained from Addgene.
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9

Breast Cancer Tissue Immunohistochemistry

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Formalin-fixed paraffin-embedded microarrays of breast cancer tissues were obtained from US Biomax (BC081120). Primary antibodies specific to p-SMAD2 (1:50; Cell Signalling 3108), FAF1 (1:200; Bethyl), TβRII (1:100; Santa Cruz) and p-Akt Ser 473 (1:200; Cell Signalling #9271) were used for immunohistochemical staining. The quantification of staining was expressed as an H score. The H score was determined by the formula 3 × the percentage of strongly staining cells+2 × the percentage of moderately staining cells+the percentage of weakly staining cells, yielding a range of 0 to 300.
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10

Aortic Protein Isolation and Western Blot

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Total proteins were isolated from the whole frozen aorta using lysis buffer as previously described [28 (link)]. Afterwards, proteins were quantified using bicinchoninic acid assay (BCA) method (Thermo Fisher Scientific). A total 50 ug of proteins were loaded and separated on 10% polyacrylamide-SDS gels under reducing conditions. At the end of electrophoresis, proteins were transferred to nitrocellulose membranes (Amersham Bioscience, Buckinghamshire, UK). Membranes were blocked in TBS containing 0.1% Tween20 (TBST) and 5% dry non-fat milk (1 h at room temperature) and incubated with the different primary antibodies overnight at 4 °C. Next day, membranes were washed 10 min three times with TBST and incubated 1 h with the appropriate HRP (horseradish peroxidase)-conjugated secondary antibody (anti-rabbit, GENA934, anti-mouse, GENA931, Sigma Chemical [1/2000]) at room temperature. ECL kit (Amersham Bioscience) was used to develop. Results were analyzed by LAS 4000 (GE Healthcare Systems, Chicago, IL, USA) and the quantification of the bands density was done by using the Quantity One software (Bio-Rad, CA, USA). The following primary antibodies were employed p-SMAD2 (#3108, Cell signaling (1/1000)), p-SMAD3 (ab52903; abcam; (1/1000)), TβRII ((sc17792; Santa Cruz Biotechnologies; 1/300)) and TβRI (sc518086; Santa Cruz Biotechnologies; [1/300]).
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