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40 protocols using microview

1

Microcomputed Tomography Analysis of Trabecular Bone

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Each specimen was placed on the scanning platform of a GE eXplore Locus µCT (GE Healthcare, Piscataway, NJ) and 360 X-ray projections were collected (80 kVp; 500 mA; 26 min total scan time). Projection images were preprocessed and reconstructed into 3D volumes (20 µm resolution) on a 4PC reconstruction cluster using a modified tent-FDK cone beam algorithm (GE reconstruction software). The 3D data were processed and rendered (isosurface/maximum intensity projections) using MicroView (GE Healthcare). Trabecular bone volume in a defect site was calculated using image analysis of µCT data (MicroView, GE Healthcare). Briefly, after 3D reconstruction, each volume was scaled to Hounsfield Units (HU) using a calibration phantom containing air and water (phantom plastic); a plug within the phantom containing hydroxyapatite was used as a bone mimic for bone mineral/density calculations. Volumes were imported into Matlab (R2009b, Mathworks) for automated batch analysis [16 (link)]. Trabecular bone volume (BV) was divided by the ROI volume (total volume, TV) in order to calculate BV/TV%.
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2

Microstructural Analysis of Femur and Vertebrae

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Femurs and vertebrae (lumbar 3–4) were fixed in 10% formalin and imaged using a GE Explore Locus microcomputed tomography (μCT) system at a voxel of 20 μm obtained from 720 views. The beam angle increment was 0.5 and beam strength was set at 80 peak kV and 450 μA. Each run consisted of control and mutant mouse bones and a calibration phantom to standardize gray scale values and maintain consistency. Bone measurements were blinded. Maximum vertebral height was determined using GE Healthcare Microview software and was consistent with previous reports(Hamrick, Pennington et al. 2004 (link)). Maximum femur length was determined as the distance between the most proximal region of the trochanter to the most distal region of the medial condyle. Distal femur trabecular bone analyses were performed in the metaphyseal region defined at 1% of the total length (~ 0.17mm) proximal to the growth plate extending 2 mm toward the diaphysis excluding the outer cortical bone. Trabecular bone volume fraction was computed by GE Healthcare Microview software application using a threshold of 700. Cortical bone measurements were determined with a 2-mm3 region of interest (ROI) in the mid-diaphysis.
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3

Micro-CT Analysis of Tibial Bone Morphometry

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Tibias were fixed in 10% buffered formalin at 4°C overnight and stored in 70% ethanol at 4°C until use. For analyses, tibias were embedded in methylmethacrylate and then scanned with a GE eXplore Locus SP Micro-CT Scanner (GE Healthcare, Pittsburgh, PA, USA) using a 12-μm voxel protocol and the following scan parameters: 80 kV, 80 μA, and 2960 ms exposure time. Bone density was normalized with an acrylic calibration phantom that included densities equivalent to air, water, and bone. Image reconstructions and analyses were performed with Microview and an Advanced Bone Application database (version 2.3; GE Healthcare). Mineralized tissue was segregated from air or soft tissue, based on a threshold of 1758 HU [corresponding to BMD = 300 mg hydroxyapatite acid/cm3]. Trabecular morphometry was characterized by measuring the fraction of bone volume/total volume (BV/TV), the trabecular thickness (Tb.Th), the trabecular number (Tb.N), and the trabecular separation (Tb.Sp).
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4

Micro-CT Imaging of Nanoparticle-Injected Embryos

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Day 4 (n=3) nanoparticle injected embryos were taken from the portable Styrofoam incubator and placed in a custom built polycarbonate imaging chamber. All imaging was completed on a GE Healthcare eXplore CT 120 scanner. Embryos were scanned at 50μm for 5 minutes with a total of 800 projections with a voltage of 80kV. Post-processing was completed in MicroView (GE Healthcare) for quantification of contrast levels and OsiriX (Apple) for three dimensional reconstructions. Contrast intensity gray scale values were converted to Hounsfield units (HU), correlating to bone material density (Badea, M, Holdsworth, Johnson, & Angiography, 2008 (link)) from calibration to a bone standard phantom with known gross densities reflective of cortical bone (SB3, GE). Contrast enhancement measurements reported reflect the attenuation within the embryo above that of the surrounding yolk and albumen attenuation.
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5

Vertebral Column Imaging and DISH Diagnosis

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Intact human vertebral columns were previously scanned by µCT as described27 (link) using a cone-beam X-ray imaging system (GE Locus eXplore Ultra: London, CAN) at a peak voltage of 80 kVp and tube current of 50 mA. The 1 000 X-ray projections were reconstructed into a single three-dimensional volume with an isotropic voxel spacing of 154 µm. Image volumes were rescaled into Hounsfield units using an internal calibrator of air and water and cortical bone substitute (450-SB3, Gammex RMI: Middleton, WI, USA). The µCT data were used to generate a series of images for each specimen that were previously assessed by two clinician observers to diagnose DISH using Resnick and Niwayama’s radiographic criteria.2 (link) Three-dimensional isosurface renderings and pseudocolored µCT images were exported from MicroView (Version 2.2, GE Healthcare: London, CAN; and Version 2.5.0, Parallax Innovations Inc.: Ilderton, CAN). Data from µCT were grouped into contingency tables and assessed by two-sided Fisher’s exact test (α = 0.05).
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6

Microstructural Bone Analysis in Mice

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Fixed femurs were scanned using a GE Explore Locus microcomputed tomography (μCT) system at a voxel resolution of 20 μm obtained from 720 views. Beam angle of increment was 0.5, and beam strength was set at 80 peak kV and 450 uA. Each run consisted of control (non-Ovx) and Ovx and Ovx + L. reuteri treated mouse bones, and a calibration phantom to standardize grayscale values and maintain consistency. On the basis of autothreshold and isosurface analyses of multiple bone samples, a fixed threshold (760) was used to separate bone from bone marrow. Bone measurements were blinded; thus, knowledge of what mouse condition the analyzed bone was from was unknown until the final data was pooled. Trabecular bone analyses were performed in a region of trabecular bone defined at 1% of the total length (~0.17 mm) proximal to the growth plate of and extending 2 mm toward the diaphysis excluding the outer cortical bone. Trabecular bone mineral content, bone volume fraction, thickness, spacing, and number values were computed by a GE Healthcare MicroView software application for visualization and analysis of volumetric image data. Cortical measurements were performed in a 2 X 2 X 2 mm cube centered midway down the length of the bone using a threshold of 1000 to separate bone from marrow.
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7

Microstructural Bone Density Assessment

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Tissue mineral density (TMD) was measured with microCT at a 50 micron voxel size (eXplore CT 120, GE Healthcare, Waukesha, WI, USA). A mineral phantom was used for calibration with analysis completed in Microview (version ABA 2.2, GE Healthcare, Waukesha, WI, USA).
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8

Micro-CT Imaging and Pulmonary Evaluation in Mice

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The acquisition was made on a high-resolution CT system (CT Locus, GE Healthcare) specially designed for small laboratory animals. Mice were anesthetized with a 4% rate of isoflurane (IsoVet Braun) during the induction and 2% during the maintenance period (scanning time). Micro-CT image acquisition consisted of 400 projections collected in one full rotation of the gantry in approximately 14 min in a single bed focused on the legs, with a 450 μA/80kV X-ray tube. 2-D and 3-D images were obtained and analysed using the software program MicroView (GE Healthcare). Pulmonary function was determined by plethymosgraphy using a pulmonary plethysmograph for sedated animals (Emka Technologies). The ratio between lung resistance and dynamic compliance (LR/Cdyn) was used as a measurement of pulmonary fitness. All procedures were carried out according to the European Normative of Welfare and Good Practice (2010/63/UE).
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9

Measuring Bone Mineral Density Using microCT

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Tissue mineral density (TMD) was measured with microCT at a 50 μm voxel size (eXplore CT 120, GE Healthcare, Waukesha, WI, USA). A mineral phantom was used for calibration with analysis completed in Microview (version ABA 2.2, GE Healthcare, Waukesha, WI, USA).
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10

Micro-CT Analysis of Calcified Bone Graft

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Using a CT scanner (GE Healthcare Bio-Sciences Corp., Piscataway, NJ, USA), micro-CT was performed in the axial plane to evaluate the calcified bone graft. Scans were initiated from the pelvis to the L1 vertebral body cranially in 13-μm sections. Microstructural indices were measured using MicroView (GE Healthcare Bio-Sciences Corp., Piscataway, NJ, USA). Bone volume/tissue volume (BV/TV), trabecular thickness (Tb.Th), trabecular number (Tb.N), and trabecular separation (Tb.Sp) were calculated.
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