The largest database of trusted experimental protocols

17 protocols using cd8a pe cy7

1

Murine PBMC Isolation and Staining

Check if the same lab product or an alternative is used in the 5 most similar protocols
Blood was collected in a tube with 3.8% w/v sodium citrate. Mouse PBMCs were purified from whole blood by Ficoll (PanEco, Moscow, Russia) density centrifugation. Murine PBMCs staining was performed using the following monoclonal antibodies: CD45-PerCP (103130; BioLegend, San Diego, CA, USA), CD3-PE (100308; BioLegend, San Diego, CA, USA), CD8a-PE/Cy7 (100722; BioLegend, San Diego, CA, USA), CD4-APC (100412; BioLegend, San Diego, CA, USA), CD19-FITC (152404; BioLegend, San Diego, CA, USA), and CD25-Pacific Blue (102022; BioLegend, San Diego, CA, USA).
+ Open protocol
+ Expand
2

Multicolor Flow Cytometry Immunophenotyping

Check if the same lab product or an alternative is used in the 5 most similar protocols
Samples were run on an Attune NxT Acoustic Focusing Cytometer (Life Technologies). Data were collected using the Attune NxT Software v3.2.1. Analysis was performed in FlowJo v10.6. Gating was first done on forward scatter and side scatter to exclude debris. Doublets were excluded by gating on FSC area versus FSC height. DAPI was used to exclude dead cells from analyses. Antibodies used: CD45-PerCP/Cy5.5 (BioLegend, cat# 103132, clone 30-F11, dilution 1:400), CD3-AF488 (BioLegend, cat# 100210, clone 17A2, dilution 1:200), CD4-APC (BioLegend, cat# 100412, clone GK1.5, dilution 1:100), CD8a-PE/Cy7 (BioLegend, cat# 100722, clone 53-6.7, dilution 1:400), Thy1.1 (BioLegend, cat# 202506, Clone OX-7, dilution 1:1000 for AF488, 1:500 for APC/Cy7) and TCR-beta chain-PE (BioLegend, cat# 109208, Clone H57-597, dilution 1:200).
+ Open protocol
+ Expand
3

Analyzing Murine PBMC Subsets by Flow Cytometry

Check if the same lab product or an alternative is used in the 5 most similar protocols
To analyse the effect of CIMVs-IL2 on the number of murine PBMCs, newly isolated cells were stained with antibodies specific for the surface markers typical for various populations of mouse immune cells. Briefly, 5 × 105 murine PBMCs in 100 µL of PBS were stained with the following antibodies for 30 min in the absence of light at RT: CD45-PerCP (#103130; BioLegend, San Diego, CA, USA), CD3-PE (#100308; BioLegend, San Diego, CA, USA), CD8a-PE/Cy7 (#100722; BioLegend, San Diego, CA, USA), CD4-APC (#100412; BioLegend, San Diego, CA, USA). After staining, the cells were washed twice with PBS and analyzed by flow cytometry using the FACSAria III (BD Biosciences, San Jose, CA, USA) and data were analyzed using BD FACSDiva™ software version 7.0. A minimum of 20,000 events were acquired for each sample. Flow cytometry results were obtained in one replicate for each animal and summarized together (n = 5, five biological replicates).
+ Open protocol
+ Expand
4

Multiparameter Flow Cytometry of Tumor Samples

Check if the same lab product or an alternative is used in the 5 most similar protocols
Flow cytometric analysis was performed as described previously (25 (link)). Briefly, tumor tissues were cut into pieces and digested with DMEM containing hyaluronidase (1.5 mg/ml, Sigma-Aldrich, USA), collagenase type 1A (1.5 mg/ml, Sigma-Aldrich, USA), and deoxyribonuclease I (20 U/ml, Sigma-Aldrich, USA) at 37°C for 45 min. The tissue mixture was passed through a 70-µm nylon cell strainer to make single cell suspension, which was then washed and resuspended in cold flow buffer (1% bovine serum albumin and 0.1% NaN3 in PBS). After being blocked with a rat anti-mouse CD16/CD32 antibody (BD Pharmingen, USA), the following fluorochrome-conjugated anti-mouse antibodies were used: CD45-BV421, CD11b-BV510, CD8a-PE-Cy7, CD4-PE, CD25-APC, NK1.1-APC-Cy7, F4/80-FITC, CD206-PE-Cy7, CD11c-APC, and Gr-1-APC-Cy7 (all from BioLegend, USA). 7-Amino-actinomycin D (7AAD) (eBioscience, USA) was used as a viability dye to exclude dead cells. Flow cytometric data were collected using a Gallios flow cytometer (Beckman, USA) and analyzed using the Kaluza software (version 1.3).
+ Open protocol
+ Expand
5

Murine Pancreatic Tumor-Infiltrating Lymphocyte Profiling

Check if the same lab product or an alternative is used in the 5 most similar protocols
Following the isolation of tumor-infiltrating lymphocytes from the murine pancreas, cells were stained with the Live Dead Aqua Dead Cell Kit (Invitrogen). The lymphocytes were washed and subsequently blocked with mouse Fc antibody (BD Pharmingen) for 10 min on ice, followed by incubation or staining with cell-surface antibodies: CD3-PerCP-Cy5.5 (Biolegend), CD4-PacBlue (Biolegend), CD8a-PE/Cy7 (Biolegend), PD-1–FITC (eBioscience), CD11b-PE TexasRed (Invitrogen), MHC II (I-A, I-E)- Alexa Fluor 700 (Biolegend), CD11c-APC (Biolegend) and F4/80-PE (Invitrogen) for a 30 min incubation on ice. The cells were then washed twice and resuspended in FACs buffer, and flow cytometry was performed using CytoFLEX (Beckman Coulter). Flow data were analyzed using CytExpert software (Beckman Coulter).
+ Open protocol
+ Expand
6

Flow Cytometry Cell Viability Assay

Check if the same lab product or an alternative is used in the 5 most similar protocols
LIVE/DEAD® Fixable Aqua Dead Cell Stain Kit for 405 nm excitation (Invitrogen). AccuCheck Counting Beads (Molecular probes). Cycloheximide (CHX) (Sigma-Aldrich). Phosphoprotein phosphatase (PP1) (Biaffin GmbH). Fluochrome labelled antibodies CD4-FITC (clone SK3), CD8a-PE.Cy7, and HLA-DR-APC.Cy7 (BioLegend), CD3-APC, CD4-PE (clone SK3), CD19-PE, CD14-V450, CD56-FITC, CD64-FITC and Iso IgG1κ-FITC (BD) and CD56-APC (ImmunoTools).
+ Open protocol
+ Expand
7

Comprehensive FACS analysis of murine blood

Check if the same lab product or an alternative is used in the 5 most similar protocols
50 µl of blood was 1:1 diluted in PBS; lymphocytes were separated using 100 µl Lymphocyte Separation Medium 1077 (C-44010, PromoCell, Heidelberg, Germany). Cells were stained for 30 min/4 °C with: CD4-PE/Cy5 (1:1000; 130312), CD8a-PE/Cy7 (1:500; 100722), B220-BV510 (1:300; 103248), Gr-1-PE (1:1000; 108408), CD11b-PerCP/Cy5.5 (1:1000; 101227), F4/80-FITC (1:1000; 123107, all from BioLegend). Filtered samples were acquired on FACSAria Sorp (BD-Biosciences), and data analyzed by FlowJo software (BD-Biosciences).
+ Open protocol
+ Expand
8

Multiparametric Phenotyping of CD8+ T Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
Gp33‐41 peptide (KAVYNFATM) and gp61‐80 (GLNGPDIYKGVYQFKSVEFD) peptides were purchased from Mimotopes. PE‐conjugated gp33‐MHC class I tetramer (H‐2Db/gp33‐41) was kindly provided by the NIH tetramer core facility. For exclusion of dead cells, efluor780 (eBioscience) or ZombieAqua (BioLegend) was used. Antibodies used were as follows: PD‐1‐FITC (J43; Thermo Fisher Scientific), HVEM‐APC (LH1; eBioscience), CD19‐APC‐Cy7 (6D5; BioLegend), CD4‐PE (RM4‐5; BD Bioscience), CD4‐PerCP‐Cy5.5 (RM4‐5; BioLegend), CD8a‐FITC (53‐6.7, eBioscience), CD8a‐PE‐Cy7 (53‐6.7; BioLegend), CD8a‐APC‐Cy7 (53‐6.7; BioLegend), CD8a‐PE (53‐6.7; BD Bioscience), IFNγ‐APC (XMG1.2; BioLegend), CD127‐APC (SB/199; BioLegend), CD25‐PE (PC61; eBioscience), Ki‐67‐PE (16A8; BioLegend), KLRG‐1‐PerCP‐eFluor710 (2F1; eBioscience), CD62L‐BV421 (MEL‐14; BioLegend), CD45.1‐PerCP‐Cy5.5 (A20; BioLegend), TNFα‐PE (MP6‐XT22; BD Bioscience), and TNFα‐FITC (MP6‐XT22; BioLegend).
+ Open protocol
+ Expand
9

Murine Lung Tissue Analysis by Flow Cytometry

Check if the same lab product or an alternative is used in the 5 most similar protocols
Lung tissue from Balb/c mice injected with 4T1.2 cells was collected and washed using ice-cold PBS. The tissue was minced using forceps and scissors into 1–2 mm sections and pressed through a cell strainer (40 μm cell suspension filter). Whole blood was collected and lysed with cold 1 × RBC lysis buffer (155 mM ammonium chloride, 10 mM sodium bicarbonate, 0.1 mM EDTA) for 10–15 min at room temperature. Lung tissue and whole blood were spun down at 250 g for 10 min at 4°C. The resulting pellet was washed twice with PBS. Subsequently, single-cell suspensions were incubated with Ghost Dye Red 780 (Tonbo Biosciences, San Diego, CA) in PBS at 4°C for 30 min. Samples were washed with PBS containing 2% FBS, 2mM EDTA, and 2mM sodium azide, then incubated with antibodies at 4°C for 1 h. Cells were washed with PBS containing 2% FBS, 2 mM EDTA, 2 mM sodium azide, and analyzed using the Attune NxT Flow Cytometer (Thermo Fisher Scientific, Waltham, MA). Flow cytometry beads (eBioscience, San Diego, CA) stained with each antibody were used as single-color controls. A combination of antibodies was used depending on the purpose of each study: CD45 PE (Biolegend, clone 30-F11), CD3 FITC (Biolegend, clone 17A2), CD8a Pe-Cy7 (Biolegend, clone 53-6.7), CD4 APC (Biolegend, GK1.5).
+ Open protocol
+ Expand
10

Murine Liver TIL Phenotyping by Flow Cytometry

Check if the same lab product or an alternative is used in the 5 most similar protocols
After isolation of the TILs from the liver, 100 μL volumes of cell suspension at a concentration of 1×107 cells/mL were plated into designated wells of a 96-well plate. Cells were first stained with Live-Dead Aqua (Invitrogen) for 30 minutes on ice, washed twice with PBS, and then blocked with rat anti-mouse Fc antibody (CD16/CD32, BD Biosciences). After blocking, cells were incubated for 1 hour with the following anti-mouse fluorophores: CD3-PerCP-Cy5.5 (Biolegend), CD4-APC-Fire (BD Biosciences), CD8a-PE/Cy7 (Biolegend), PD-1-FITC (eBioscience), OX40-APC (Biolegend), CD44-PE (Biolegend), CD62L-APC (Biolegend), and CCR7-BV421 (Biolegend). Cells were washed following staining, and suspended in Fix/Perm buffer (eBioscience) for 30 minutes. After fixation, intracellular staining with Eomes PE (Invitrogen) and IFNγ BV421 (Biolegend) was done on ice for 30 minutes. Flow cytometry was performed using the CytoFLEX flow cytometer (B eckman Coulter).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!