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8 protocols using ab76293

1

Immunohistochemistry and In Situ Hybridization

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The methods for immunohistochemistry and in situ hybridization were described in our previous study20 (link),22 (link). For in situ hybridization, a probe for human miR-455-3p (Exiqon, Invitrogen, Shanghai, China) was used. For immunohistochemical analysis, deparaffinization and rehydration of the sections were performed with standard xylene-to-ethanol washes. The sections were then blocked in phosphate-buffered saline (PBS) plus 0.025% Tween 20 with 10% FBS. After blocking, the sections were incubated at 4 °C overnight with primary antibodies specific for PAK2 (1:100 dilution, Abcam, ab76293), phospho-PAK2 (1:100 dilution, Abcam, ab40795), COL2A1 (1:100 dilution, Abcam, ab188570), and MMP13 (1:80 dilution, Abcam, ab39012). Negative controls were prepared by substituting PBS for the primary antibodies. After overnight incubation, the sections were incubated with HRP-conjugated anti-rabbit IgG secondary antibody (Cell Signaling Technology, Boston, USA) for 30 min.
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2

Regulating Tumor Growth by Targeting circ_0008717

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A549 cells transfected with lentivirus mediated sh-circ_0008717 or sh-NC were injected into the nude mice subcutaneously (4–6 weeks old). The tumor size was determined weekly. Mice were euthanized at day 28, and tumors were isolated, weighed, and used for the detection of circ_0008717, miR-1287-5p, and PAK2 using western blot or qRT-PCR. Also, tumors were fixed in formalin for immunohistochemistry (IHC) with the PAK2 antibody (1:250, ab76293, Abcam). All experiments were performed in line with the guidelines approved by the Ethics Committee of Tianjin First Center Hospital.
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3

Western Blot Analysis of Signaling Proteins

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After 48 h of transfection, the cells were washed with pre-cooled PBS (Thermo Fisher Scientific, MA, USA) 3 times and then lysed in RIPA lysis buffer (Thermo Fisher Scientific, MA, USA) on ice for 10 min. The BCA assay kit from Thermo Fisher Scientific (MA, USA) was applied for quantification of the protein samples. After boiled at 95°C for 10 min, the protein samples were subjected to sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE) at 100V and then transferred to nitrocellulose membranes. Five percent BSA/TBST was used to block the membranes for 60 min. Subsequently, the membranes were incubated with primary rabbit polyclonal antibodies overnight at 4°C and with horseradish peroxidase (HRP) -conjugated secondary antibody goat anti-rabbit (ab6721, 1:3000, abcam, Cambridge, UK) in succession for 120 min of hybridization at room temperature. 1 × TBST (Solarbio, Beijing, China) was used to wash the membranes. Protein bands were visualized using the electrochemiluminescence kit (Solarbio, Beijing, China) and photographed. Primary antibodies include CXCL1 (PAI-29220, 1:2000, Thermo Fisher Scientific), Jak2 (ab108596, 1:5000, abcam), p-Jak2 (ab76293, 1:5000, abcam), STAT3 (9133S, 1:1000, Cell Signaling Technology), p-STAT3 (8204S, 1:1000, Cell Signaling Technology), and GAPDH (ab181602, 1:10000, abcam).
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4

Protein Extraction and Western Blot Protocol

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Protein extraction was performed by use of RIPA lysis buffer (Beyotime, Shanghai, China), in the presence of protease inhibitors (Thermo Fisher Scientific). Quantification of the extracted proteins was fulfilled employing a Nanodrop 2000 system (Thermo Scientific). Afterward, protein separation was carried out utilizing SDS-PAGE. Subsequently, the target proteins were transferred onto the nitrocellulose (NC) membrane, and blocked in 5% BSA. Thereafter, incubation of primary antibodies, including anti-PAK2 (ab76293, Abcam), anti-SOX2 (#2748, Cell Signal Technology), anti-p-SOX2 (#92186, Cell Signal Technology), anti-E-cadherin (ab40772, Abcam), anti-Vimentin (ab137321, Abcam), and anti-β-actin (66009-1-Ig, Ptgcn, IL, United States), was conducted at 4°C overnight. After that, the target proteins were incubated with HRP-labeled secondary antibody (ab6721, Abcam) at RT for 1 h. Finally, the signals were developed using ECL reagent and detected with the help of a LAS-3000 (FUJIFILM, Tokyo, Japan) system.
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5

Protein Extraction and Western Blot Analysis

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Total protein was extracted with RIPA lysate (strong) (Beyotime Biotechnology
Co., Ltd, Shanghai, China). Then the concentration of proteins was tested by the
bicinchoninic acid assay (Beyotime). Next, the proteins were separated by
electrophpresis and transferred onto polyvinylidene difluoride membranes. The
membranes were blocked with 5% skimmed milk and washed by tris buffered saline
tween (TBST). After that, the membranes were cultured with the primary
antibodies at 4°C overnight: P21 activated kinase 2 (1:5000, ab76293, Abcam,
Cambridge, MA, USA), B-cell lymphoma 2 (Bcl-2) (1:1000, ab32124, Abcam),
Bcl-2-associated X protein (Bax) (1:2000, ab32503, Abcam), cleaved caspase-9
(1:2000, ab2324, Abcam), cleaved caspase-3 (1:2000, ab2302, Abcam) and β-actin
(1:5000, ab179467, Abcam). After being washed by TBST (3 times/10 minutes), the
membranes were cultured with secondary antibody horseradish
peroxidase-conjugated goat anti-rabbit immunoglobulin G (IgG) H&L (1:2000,
ab205718, Abcam) for 1 hour and then washed by TBST (3 times/10 minutes) before
chemiluminescence developing and visualization. The image of protein blotting
was analyzed by Image J2x v2.1.4.7 software (Rawak Software, Inc. Germany).
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6

PAK Kinase Inhibitor Protocols

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IPA-3 (#3622) and PIR3.5 (#4212) were purchased from Tocris Bioscience and dissolved in sterile dimethylsulfoxide (DMSO) to make 50 mM stock solutions. Working solutions were prepared by 10-fold dilution of the stock solution in 50 mM Tris, pH 8.0, immediately before use. FRAX597 (#6029) was purchased from Tocris Biosciences and dissolved in sterile DMSO to make a 10 mM stock solution. Working solution was prepared by 10-fold dilution in cell culture medium. Dasatinib was obtained from Selleckchem (S1021), and a 200 µM stock solution was made in sterile DMSO. The following antibodies were used: PAK1 (Abcam, ab223849), PAK2 (Abcam, ab76293), PAK1 (phosphoS144)+PAK2 (phosphoS141)+PAK3 (phosphoS139) (Abcam, ab40795), PAK1/2/3 (Cell Signaling, #2604), and β-actin (Sigma-Aldrich, A5441).
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7

PAK Kinase Inhibitor Protocols

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IPA-3 (#3622) and PIR3.5 (#4212) were purchased from Tocris Bioscience and dissolved in sterile dimethylsulfoxide (DMSO) to make 50 mM stock solutions. Working solutions were prepared by 10-fold dilution of the stock solution in 50 mM Tris, pH 8.0, immediately before use. FRAX597 (#6029) was purchased from Tocris Biosciences and dissolved in sterile DMSO to make a 10 mM stock solution. Working solution was prepared by 10-fold dilution in cell culture medium. Dasatinib was obtained from Selleckchem (S1021), and a 200 µM stock solution was made in sterile DMSO. The following antibodies were used: PAK1 (Abcam, ab223849), PAK2 (Abcam, ab76293), PAK1 (phosphoS144)+PAK2 (phosphoS141)+PAK3 (phosphoS139) (Abcam, ab40795), PAK1/2/3 (Cell Signaling, #2604), and β-actin (Sigma-Aldrich, A5441).
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8

Western Blotting Antibody Conditions

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For Western blotting the primary antibodies used were (Abcam, Cambridge, MA, USA): polyclonal to DSCAM (ab85362), monoclonal to PAK1 (ab40852), PAK2 (ab76293), PAK3 (ab40808), polyclonal to phosphor-PAK1 S204 (ab79503), monoclonal to LIMK1 (ab117623), polyclonal to phosphor-LIMK1 T508 (ab38508), polyclonal to Cofilin (ab42824), phospho S3 Cofilin (ab12866), monoclonal to beta Tubulin (ab11308), and secondary antibodies HRP conjugated (ab6802 and ab6820). For DSCAM stimulation, 500 ng/mL Mouse Netrin 1 peptide (ab91607, Abcam) was used.
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