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9 protocols using bcl2 associated x (bax)

1

Western Blot Analysis of Cell Signaling

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Western blotting was performed as previously described. Tissues and cultured cells were lysed in RIPA buffer (Beyotime Biotechnology, Shanghai, China, P0013B) supplemented with 1 mM PMSF (Beyotime Biotechnology, ST505) for 30 min on ice. Protein extracts were obtained by centrifugation for 30 min at 4°C. Proteins were separated on SDS-PAGE gels and transferred to PVDF membranes. Membranes were then incubated with antibodies against CD147 (R&D Systems, MN, United States, AF772), NLRP3 (R&D Systems, MAB7578), Bcl-2 (Huabio, Hangzhou, China, M1206-4), Bax (Huabio, ER0907), p65 (Proteintech, Wuhan, China, 10745-1-AP), p-p65 (Cell Signaling Technology, CA, United States, 3033S), Lamin B (Proteintech, 66095-1) or α-Tubulin (Proteintech, 66031-1) in TBST. After incubation of membranes with secondary antibodies, protein bands were visualized with ECL solution (Beyotime Biotechnology, Shanghai, China, P0018FS). Image analysis procedures were performed with Carestream Molecular Image software.
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2

Western Blot Analysis of Myocardial Proteins

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Myocardial tissue and cell suspension was lysed by RIPA lysis buffer (MB-030-0050, Multi Sciences Biotech, Hangzhou, China). BCA Protein Assay Kit (23225, Thermo Fisher, USA) was adopted to determine protein concentrations. After equal quantities, total proteins were separated in SDS-PAGE gel (4-20%, ACE Biotechnology, Xiangtan, China), and the bands were transferred onto PVDF membranes (03010040001, Merck, USA). After blocked with 5% skimmed milk and washed with tris-buffered saline containing 0.1% tween-20 (TBST), protein bands were blotted with primary antibodies at 4° C overnight. After washing with TBST, protein bands were blotted with HRP conjugated secondary antibody and monitored using ECL buffer (32209, Thermo Fisher). Quantifications of western blotting were measured with Fusioncapt advance software. Antibody information: Bax (HUABIO, USA, ET1603-34, 1:1000), Bcl2 (HUABIO, ET1702-53, 1:1000), Cleaved-caspase3 (HUABIO, ET1608-64, 1:1000), IL-10 (Servicebio, Wuhan, China, GB11108, 1:1000), TLR4 (Servicebio, GB11519, 1:1000), α-SMA (Servicebio, GB111364, 1:1000), MMP-9 (Abcam, Cambridge, UK, ab76003, 1:1000), Collagen I (Abcam, ab34710, 1:1000), GAPDH (CST, USA, 5174S, 1:1000). HRP-conjugated secondary antibody (HUABIO, HA1001, and HUABIO, HA1006, 1:50000).
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3

Protein Expression Analysis by Western Blotting

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To investigate the associated protein activation, Western blotting analysis was performed. The protein samples were mixed with sample loading buffer (P0015F, Beyotime, China) and subjected to heat at 95 °C for 5 min before being separated on 10% SDS-PAGE gels, and subsequently transferred onto polyvinylidene fluoride membranes. The used antibodies were: FOXO1 (1:1000, 2880 s, Cell Signaling Technology, USA), VCAN (1:500, ET7107-09, Huabio, China), BAX (1:3000, ET1603-34, Huabio, China), BCL-2 (1:3000, ER0602, Huabio, China), neuronal nuclear antigen (NeuN; 1:1000, 36,662, Cell Signaling Technology, USA), MBP (1:1000, PA1-10,008, Thermo Scientific, USA). Finally, the blots were scanned and analyzed by ImageJ software. The normalized band intensities against the corresponding housekeeping protein β-actin (1:1000, 3700 s, Cell Signaling Technology, USA) were calculated for precise comparison.
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4

Western Blot Analysis of Apoptosis and Autophagy

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After 48 h of HEA treatment, SGC-7901 cells were collected, total protein was extracted, and Western blot analysis was performed as previously described [13 (link)]. Primary rabbit antibodies against β-actin (1:3000), AIF (1:2000), Bcl-2 (1:2000), and Bax (1:2000) were purchased from HUABIO (Hangzhou, China). Primary antibodies against caspase-3 (1:2000), caspase-8 (1:2000), caspase-9 (1:2000), caspase-12 (1:1000), cytochrome C (1:500), poly(ADP-ribose) polymerase (PARP) (1:2000), cleaved-PARP (1:2000), and p53 (1:1000), were purchased from Cell Signaling Technology (Beverly, MA, USA). Primary antibodies against ATF4 (1:1000), CHOP (1:500), p62 (1:1000), and Beclin1 (1:1000) were obtained from Proteintech (Rosemont, IL, USA). Primary antibodies against LC3 (1:500), ATG5 (1:1000), and ATG12 (1:1000) were obtained from MBL (Nagoya, Japan). Anti-rabbit lgG horse-radish peroxidase-conjugated secondary antibody (1:3000) was purchased from Abcam (Cambridge, MA, USA).
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5

Ferroptosis Regulation and Detection

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TA, FeCl3·6H2O and H2O2 were purchased from Sigma-Aldrich (St. Louis, MO, USA). DOC and calcein acetoxymethyl ester (calcein-AM)/propidium iodide (PI) detection kits were obtained from Dalian Meilun Biotech Co., Ltd. (Dalian, China). Methylene blue (MB), ethanol, hydroxylamine hydrochloride, tetrazolium (MTT) 1,10-phenanthroline monohydrate, GSH, vitamin E (VE), glutamate (Glu), cysteine (Cys), Tween 20, and phosphate buffer solution (PBS) were bought from Aladdin-Reagent Co., Ltd. (Shanghai, China). Deferoxamine mesylate (DFO), ferrostatin-1 (Fer-1), necrostain-1 (Nec-1), 3-methyladenine (3-MA), and benzyloxycarbonyl-Val-Ala-Asp(OMe)-fluoromethylketone (APO) were acquired from MedChemExpress (Monmouth Junction, NJ, USA). Chlorin e6 (Ce6) was purchased from Shanghai Yuanye Bio-Technology Co., Ltd. (Shanghai, China). Primary monoclonal antibodies (Bax, Bcl2, caspase 9, GPX4, COX2, XCT, and SLC3A2) and secondary antibodies were purchased from HuaBio (Huangzhou, China).
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6

Murine Ovarian Tissue and KGN Cell Protein Analysis

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Murine ovarian tissue and drug-treated KGN cells were subjected to protein extraction in RIPA lysis and extraction buffer (Thermo, USA). Protein concentrations were quantified using the BCA protein assay kit (Thermo, USA). The protein samples were fractionated by SDS‒PAGE and then transferred to PVDF membranes (Millipore, USA). Subsequently, the membrane was blocked using 5% skim milk for 1 h. Then, the sections were incubated overnight at 4 °C with the corresponding primary antibodies, including pATM, PGC-1α, TERF2 (ABclonal, China), SIRT1, p53 (Proteintech Group, China), Bax, Bcl-2, and β-actin (HuaBio, China), and then probed with secondary antibodies. Protein chemiluminescence was detected using the ECL chemiluminescence reagent (Thermo, USA). Finally, exposure was performed using an exposure device.
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7

Protein Expression Analysis of Cell Lysates

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Cell lysates were prepared using radioimmunoprecipitation assay (RIPA) buffer (Beyotime, China, P0013B). Total protein was quantified by BCA protein assay (Bio‐Rad, Berkery). Each sample was adjusted to equal amount of protein using 5X loading buffer for loading. The samples were separated by SDS‐PAGE, transferred to a polyvinylidene fluoride membrane, and immunoblotted with the following antibodies: GDF11 (DGDF80, R&D Systems,Emeryville, CA,USA), HGF (ab83760, Abcam, USA), VEGFR1 (ET1605‐11,Huabio,China), CD31 (#77699, Cell Signalling TechnologyBoston,MA, USA), VEGFR2 (#9698, following Abs are all from Cell Signalling Technology,USA), phospho‐p44/42 (Thr202/Try204 phospho‐ERK1/2,#4370), p44/42 MAPK (Erk1/2,#4696), BCL2 (#2827), BAX (#14796), Cleaved Caspase3 (#9661), phospho‐Smad2 (Ser465/Ser467,#18338), phospho‐Smad3 (Ser423/425, # 9520), Smad2(#5339), Smad3(#9523), anti‐β‐actin (#3700), EIF4E (R1512‐8,Huabio, China), Phospho‐eIF4E (S209) (ET1608‐66,Huabio, China) and VEGF ( ER30607,Huabio, China),at 4°C overnight. After incubation of the membranes with peroxidase‐conjugated secondary antibodies (Cell Signalling Technology,USA), bands were visualized using enhanced chemiluminescence reagents (Bio‐Rad,Los Angeles, CA,USA).
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8

Apoptosis Pathway Modulators Protocol

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A 500 mM DSF (Sigma-Aldrich; Merck KGaA) stock solution was dissolved in high-quality anhydrous dimethyl sulfoxide (DMSO) and stored in the dark at − 20 °C. A stock solution of copper gluconate (Sigma-Aldrich; Merck KGaA) at a concentration of 500 μM was prepared by dissolving the compound in ddH2O. A 500 mM N-acetyl-l-cysteine (NAC; Sigma-Aldrich; Merck KGaA) stock solution was dissolved in high-quality anhydrous DMSO and stored in the dark at − 20 °C. Antibodies for western blot analysis were as follows: caspase 3 (cell signaling technology), β-actin (ProteinTech), AIP (cell signaling technology), p53 (cell signaling technology), BCL6 (cell signaling technology); cleaved (c)-caspase 3 (Abcam), BCL2 (Abcam), BCL-XL (Abcam), IκB (Abcam), phosphorylated (p)-IκB (Abcam), NF-κB p65 (Abcam) and BAX (HuaBio). Antibodies for flow cytometry were as follows: Alexa Fluor® 647-conjugated BCL2 (clone Bcl-2/100; BD Pharmingen™; BD Biosciences), Alexa Fluor® 488-conjugated BAX (clone 2D2; BioLegend.), PE-Cy™7-conjugated BCL6 (clone K112-91; BD Biosciences) and PE-conjugated BCL-XL (clone 7B2.5; Invitrogen; Thermo Fisher Scientific, Inc.). The Cell Counting Kit-8 (CCK-8) was purchased from Genview. JC-1 Mitochondrial Membrane Potential Detection Kit (C2006) was purchased from Beyotime Institute of Biotechnology. Dihydrorhodamine (DHR) 123 (D1054) was purchased from Sigma-Aldrich; Merck KGaA.
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9

Macrophage and Chondrocyte Protein Analysis

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The total proteins from different macrophages and chondrocytes were extracted with the RIPA lysis buffer (MCE, NJ, USA) containing a mixture of phosphatase and protease inhibitors. Then, the proteins were separated with 8–12% SDS-PAGE (Febio science, Hangzhou, China) and transferred to the polyvinylidene fluoride membranes (Merk Millipore, Darmstadt, Germany). The membranes were blocked with 5%BSA and then incubated with the primary antibodies overnight. The membranes were washed next day with PBST and then incubated with the HRP-conjugated secondary antibodies (Beyotime, Shanghai, China) for 90 min. These results on the membranes were captured and documented by Molecular Imager (Bio-Rad, CA, USA).
The primary antibodies used include those against IL-1β (R&D Systems, MN, USA), NLRP3 (Adipogen, CA, USA), ASC (Adipogen), Caspase-1 (Adipogen), P-jak2 (Abcam, MA, USA), P-Stat3 (Abcam), P-bad (Cell Signaling Technology, MA, USA), Cleaved Caspase-3 (Cell Signaling Technology), Jak2 (ABclonal, Wuhan, China), Stat3 (ABclonal), Bad (ABclonal), Clic1 (ABclonal), Clic4 (ABclonal), ADAMTS5 (ABclonal), MMP13 (ABclonal), Bax (HUABIO, Hangzhou, China), Bcl-2 (HUABIO), Clic5 (HUABIO), PIM-1 (HUABIO), Collagen II (ProteinTech, Wuhan, China), Aggrecan (ProteinTech), β-actin (ProteinTech), GADPH (ProteinTech).
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