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8 protocols using luminex is software

1

Cytokine Quantification in Sera

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Blood samples were collected, incubated at room temperature, and centrifuged at 6,797 × g. Cytokines were quantified in sera by using a Luminex Screening assay (R&D Systems, Wiesbaden, Germany) and a Luminex 200 system with Luminex IS software (Luminex Corporation, MV’s-Hertogenbosch, Netherlands) according to the manufacturer’s instructions.
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2

Quantifying Cytokine Profiles in Stimulated DCs

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Blood samples were collected, incubated at room temperature and centrifuged at 1,000 × g. Splenic CD11c+ DCs were stimulated overnight with 100 ng/ml liposaccharide (Sigma-Aldrich, München, Germany). Cytokines were quantified in the supernatants from stimulated DCs or CD4+ T cells, and in sera by using a Luminex Screening assay (R&D Systems, Wiesbaden, Germany) and a Luminex 200 system with Luminex IS software (Luminex Corporation, MV’s-Hertogenbosch, Netherlands) according to the manufacturer’s instructions. The detection limits were 1.32 pg/ml for IL-10, 0.73 pg/ml for IFN-γ, 0.13 pg/ml for TNF-α, and 1.31 pg/ml for IL-12, respectively.
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3

Multiplex HPV Genotyping by Luminex

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The extracted DNA was amplified by a nested PCR reaction using PGMY09/PGMY11 and GP5+/GP6+ primers as previously described [30 (link)].
The typing of 46 mucosal HPV types was carried out by a multiplex system based on the xMAP® technology as previously described by Zubach et al., [30 (link)]. Briefly, 46 fluorescence sortable microspheres (Luminex Corporation, Austin, TX) were coupled to the 46 specific probes for HPV types 6, 11, 13, 16, 18, 26, 30, 31, 32, 33, 34, 35, 39, 40, 42, 43, 44, 45, 51, 52, 53, 54, 56, 58, 59, 61, 62, 66, 67, 68, 69, 70, 71, 72, 73, 74, 81, 82, 83, 84, 85, 86, 87, 89, 90 and 91.. The double stranded second round PCR products, labelled with biotin, were made single-stranded by digestion with 2 μL of bacteriophage T7 gene6 exonuclease (New England BioLabs, Pickering, ON, Canada) that removed the non-labelled strand after 40 min incubation at room temperature. The single stranded HPV DNA was incubated for hybridization at 60 °C for 10 min and streptavidin-phycoerythrin (PE) (Invitrogen) in 1-tetramethyl ammonium chloride (TMAC) (Sigma), was added and incubated for 5 min at 60 °C. Genotype specific hybridization was detected on a Luminex Liquid Chip 200 flow cytometer (Qiagen) using the Luminex IS software (Luminex).
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4

Cytokine Profiling of Intestinal Biopsies

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After the preparation of the small intestines or colons, they were rinsed with PBS and cut open longitudinally. A small explant from the distal part of the colon or the ileum was taken and the weight was determined (around 10–20 mg). The biopsies were cultured for 6 h in 300 μl of RPMI (Invitrogen) supplemented with 10% heat-inactivated FCS, 25 mmol/L HEPES (both Biochrom, Berlin, Germany), 100 U/mL penicillin, and 0.1 mg/mL streptomycin (both Sigma-Aldrich) (complete media). Cytokine levels in the supernatants were measured by Polystyrene bead-based Luminex Assay (R&D Systems, Abingdon, UK). The assay was run on a Luminex 200 instrument. Cytokine concentrations were calculated using the Luminex IS software (Luminex Corporation, Austin, TX), and were normalized to the respective colon/ileum weight.
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5

Quantifying Cytokines in Serum Samples

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Cytokines in serum samples were quantified using a Procarta Cytokine assay kit, according to the manufacturer's guidelines. The assay was run on a Luminex 200 system and cytokine levels were quantified using the Luminex IS software (Luminex Corporation, Austin, TX).
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6

Colon Explant Cytokine Quantification

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Colons were flushed with PBS and cut open longitudinally. A small explant (approximately 15-20 mg) from the distal part of the colon was cultured for 6 h in 300 µl of IMDM complete (IMDMc) culture medium supplemented with 10% heat-inactivated FCS, 25 mM β-Mercapthoethanol and antibiotics (100 U/ml penicillin, 0.1 mg/ml streptomycin). Cytokine levels in the supernatants were quantified by Luminex technology (R&D Systems, Abingdon, UK) on a Luminex 200 instrument. Cytokine concentrations were calculated using the Luminex IS software (Luminex Corporation, Austin, TX), and were normalized to the respective colon weight.
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7

Cytokine Profiling of Colon Explants

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A small explant (15-25 mg) from the distal part of the colon was cultured for 6 hours in IMDMc. Cytokine levels in the supernatants were measured by Luminex technology (R&D Systems) on a Luminex 200 instrument using the Luminex IS software (Luminex Corporation). Cytokine concentration was normalized to the respective weight of the colon biopsies.
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8

Cytokine Quantification in T cell Activation

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Spleen and MLN cells were isolated and stimulated with anti-CD3 antibody as described. The levels of IFN-γ and IL-17 in cell culture supernatants were quantified with the Procarta Cytokine assay kit (Panomics, Fremont, CA) according to the manufacturer's recommendations. The assay was performed on a Luminex 200 instrument, and levels of cytokines were calculated with the Luminex IS software (Luminex Corporation, Austin, TX).
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