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13 protocols using cd45ra pe

1

Comprehensive T Cell Phenotyping

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Changes in T cell phenotype by flow cytometry were performed to analyze activation and memory surface markers before and after T cell encapsulation using BD Accuri C6 Plus equipment (BD Bioscience, Franklin Lakes, NY, USA). Three and four multicolor flow cytometry panels were employed to study the T cell phenotype changes. Zombie NIR fixable cell viability dye (BioLegend, San Diego, CA, USA) was used to discriminate the dead cell population in both panels. To identify the activated T cell populations, APC-CD8, PE-CD69, and Kiravia blue HLA-DR labeled antibodies (BioLegend, San Diego, CA, USA) were employed. Similar to the activation panel, the memory panel also included APC-CD8 along with FITC-CD45RA labeled antibody (BioLegend, San Diego, CA, USA). In both panels, labeled antibodies were employed according to the manufacturer's instructions at 5 μl antibodies per 1 M cells in a 100 μL sample. Moreover, the CAR content of the T cell population was identified using 400 ng/106 T cells of 1A7 anti-14G2a idiotype antibody (Absolute Antibody, Boston, MA, USA) conjugated with APC Conjugation Kit – Lightning-Link (Abcam, Waltham, MA, USA). The 1A7 anti-14G2a idiotype antibody was employed along with FITC-CD8 labeled antibody to form 3 panels with PE-CD45RA, PE-CD45RO, and PE-HLADR (BioLegend, San Diego, CA, USA) for the CAR-cell phenotype characterization.
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2

Multiparametric Immunophenotyping of Human PBMCs

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Human PBMCs were stained with BV421-CD4 (BioLegend, OKT4, CAT# 304222, RRID: AB_2562134), PE/Cy7-CD25 (BioLegend, M-A251, CAT# 356108, RRID: AB_2561975), PE-CD45RA (BioLegend, HI100, CAT# 304108, RRID: AB_314412), PerCP/Cy5.5-CD45RO (BioLegend, UCHL1, CAT# 304222, RRID: AB_2174124), BUV395-CD3 (BD Biosciences, UCHT1, CAT# 563548, RRID: AB_2744387), APC-FOXP3 (Thermo Scientific, PCH101, CAT# 17-4776-42, RRID: AB_1603280), FITC-Ki67 (BD, B56, CAT# 556026, RRID: AB_396302). T cells activation with phorbol-12-myristate 13-acetate/ionomycin (PMA/iono) was performed according to the manufacturer’s protocol (BioLegend, CAT# 423301).
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3

Phenotyping Brain-Resident Immune Cells

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Following dissection, whole brains were mechanically homogenized and passed through a 100-μM sterile filter. Cells were treated with a CNS-Specific Percoll Isotonic solution (Percoll – Cytiva) to remove myelin. Brain cells were stained with BV421-CD4 (BioLegend, OKT4, CAT# 304222, RRID: AB_2562134), PE/Cy7-CD25 (BioLegend, M-A251, CAT# 356108, RRID: AB_2561975), PE-CD45RA (BioLegend, HI100, CAT# 304108, RRID: AB_314412), PerCP/Cy5.5-CD45RO (BioLegend, UCHL1, CAT# 304222, RRID: AB_2174124), BUV395-CD3 (BD Biosciences, UCHT1, CAT# 563548, RRID: AB_2744387), APC-FOXP3 (Thermo Scientific, PCH101, CAT# 17-4776-42, RRID: AB_1603280) and LIVE/DEAD Fixable Green Dead Cell Stain Kit (ThermoFisher Scientific, CAT# L23101P).
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4

Isolation and Characterization of CD4+ T Cells

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CD4+ cells were isolated from bulk PBMCs using the CD4+ T Cell Isolation Kit with MicroBeads for column-based magnetic activated cell sorting (MACS)(Miltenyi Biotech, CAT# 130-096-533). MACS was performed according to the manufacturers protocol. Cells were stained with PE/Cy7-CD25 (BioLegend, M-A251, CAT# 356108, RRID: AB_2561975), PE-CD45RA (BioLegend, HI100, CAT# 304108, RRID: AB_314412), PerCP/Cy5.5-CD45RO (BioLegend, UCHL1, CAT# 304222, RRID: AB_2174124), BUV395-CD3 (BD Biosciences, UCHT1, CAT# 563548, RRID: AB_2744387), and LIVE/DEAD Green Dead Cell Stain Kit (ThermoFisher Scientific, CAT# L23101). Pooled cells from all groups were used to generate the LIVE/DEAD single-color control, all fluorescence minus one (FMO) controls, and unstained controls. Ultracomp eBeads (ThermoFisher Scientific, CAT# 01-2222-41) were stained to generate single color controls. Analysis was performed using FlowJo (Version 10, RRID: SCR_008520). FACs gating strategy is detailed in Supplemental Figure 1.
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5

Immunophenotyping of Tumor Cells and CAR T Cells

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The following Abs were purchased from BD bioscience: human CD3-APC-H7 (Cat#: 560176, dilution: 1:100), CD4-BV421 (Cat#: 562424, dilution: 1:100), CD8-APC (Cat#: 340584, dilution: 1:100), CD45-BV510 (Cat#: 563204, dilution: 1:30), CD45RA-PE (Cat#: 555489, dilution: 1:30), CCR7-FITC (Cat#: 561271, dilution: 1:50) and B7-H3-BV421 (Cat#: 565829, dilution: 1:100); human CCR2-BV421 (Cat#: 357210, dilution: 1:100) Ab was purchased from Biolegend. Expression of human B7-H3 in tumor cell lines and organoid cells was assessed with the 376.96 mAb followed by APC-goat anti-mouse IgG Ab (BD Biosciences, Cat# 550826, RRID: AB_398465, dilution 1:100), and confirmed with another B7-H3 mAb (Clone 7–517; BD Bioscience, Cat#: 565829, RRID: AB_2739369, dilution 1:100)32 (link). Expression of the B7-H3.CARs was detected using the fusion protein 2Ig-B7-H3-Fc (R&D Cat# 1027-B3) and followed by AF647-goat anti-human IgG (H+L) Ab (Jackson ImmunoResearch Laboratories Inc., Cat# 109-606-088, dilution 1:100); CD19.CAR was detected with the previously described anti-CD19.CAR mAb47 (link). Samples were acquired with BD FACS Canto II or BD FACS Fortessa using the BD Diva software (BD Biosciences). For each sample, a minimum of 10,000 events were acquired and data were analyzed using Flowjo 10.
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6

Isolation and Sorting of Resting CD4 T Cells

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Peripheral blood mononuclear cells (PBMCs) from HIV- and HCV- healthy donors were isolated via Ficoll-paque density centrifugation. CD4 T cells were then isolated by negative selection (Stem Cell, Easy Sep) and resting CD4 T cells were obtained from this population by depleting cells expressing HLA-DR, CD25 and CD69 (Miltenyi). Resting CD4 T cells were stained in bulk for 1) CD99-FITC (Biolegend), CCR10-APC (BD Biosciences), and Propridium Iodide to distinguish viable cells; 2) CD4-PeCy7 only (Biolegend); or 3) CD45RA-PE (Biolegend) and CD45RO-APC (Biolegend). These three populations of cells were sorted independently on the MoFlo.
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7

Multiparametric Flow Cytometry Immunophenotyping

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Mouse FITC-CD4 and eFluor 605-CD44 [BD-Pharmingen]; KJ1.26 anti-TCR (Caltag Laboratories), Brilliant Violet 570-CD4 and Alexa Fluor 700-CD44 were from [Biolegend], FITC-Klotho,PE-Cy7-CD99, PE-Cy5-VDR, and PE-Cy7-CNR2 were from [Bioss]; APC-CCR10 and APC-ITGA3 were from [R&D Systems]; Fixable viability dye eFluor 780 was from [eBioscience]. Antibodies for human PBMC staining were as follows: from Biolegend, CD99-FITC,CD69-BV421 and CD69-APC , CD45R0-APC and CD45R0-BV421, CD3-AF700, CD4-Pe/Cy7, CD45RA-PE, Itga3 (CD49c)-PE, IL-7R-BV510, CD25-APC, HLA-DR-APC. From BD Biosciences, CCR10-APC and CCR10-PerCP Cy5.5. and viability dye eFluor 780 as above. Relevant mouse anti human isotype antibodies to IgG1k or IgG2ak were utilized for the following fluorophores: BV421, BV510, FITC, PE, and APC for both isotypes (Biolegend).
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8

Isolation and Sorting of Resting CD4 T Cells

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Peripheral blood mononuclear cells (PBMCs) from HIV- and HCV- healthy donors were isolated via Ficoll-paque density centrifugation. CD4 T cells were then isolated by negative selection (Stem Cell, Easy Sep) and resting CD4 T cells were obtained from this population by depleting cells expressing HLA-DR, CD25 and CD69 (Miltenyi). Resting CD4 T cells were stained in bulk for 1) CD99-FITC (Biolegend), CCR10-APC (BD Biosciences), and Propridium Iodide to distinguish viable cells; 2) CD4-PeCy7 only (Biolegend); or 3) CD45RA-PE (Biolegend) and CD45RO-APC (Biolegend). These three populations of cells were sorted independently on the MoFlo.
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9

Multiparametric Flow Cytometry Panel

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NGFR-APC, NGFR-PE, TCRαβ-FITC, CD19-A488, CD19- A700, CD62L-BV421, CD45RA-PE, CD4-PerCP-Cy5.5, CD8a- APC-Cy7 (all from Biolegend) were used. For CD45RA/CD62L staining, isotype controls as recommended by the manufacturer were used to determine positive and negative populations. The APC-conjugated CD19-CAR idiotype antibody was a gift from Crystal Mackall.
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10

Evaluation of Lymphocyte Subsets and Proliferation

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Peripheral blood mononuclear cells (PBMCs) were isolated using Ficoll density separation (GE healthcare, Life Systems). For the evaluation of different lymphocyte subsets, PBMCs were stained with the following fluorochrome-conjugated monoclonal antibodies against the following cell surface markers: CD3 FITC (Biolegend, clone OKT3), CD4 PE (Biolegend, clone OKT4), CD8 APC (Biolegend, clone SK1), CD19 PerCP-Cy5 (Biolegend, clone 4G7), CD56 APC (Biolegend, clone 5.1H11), CD45 RA PE (Biolegend, clone HI100), and CD45 RO APC (Biolegend, clone UCHL1). For proliferation assays, PBMCs were stained with CellTracker™ green CMDFA dye (ThermoFisher Scientific, USA). Cells were stimulated with purified anti-CD3 plus anti-CD28 antibodies (BioLegend, USA) or PHA (Sigma) for 5 days at 37 °C 5% CO2. Before sample acquisition, PBMCs were stained using the murine PE-conjugated monoclonal antibody against human CD3 (Biolegend, clone OKT3). All samples were acquired on FACSCanto II (BD bioscience) and analyzed with the use of FlowJo 7.6.5 software (Tree Star, Ashland, OR).
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