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5 protocols using pf184

1

Inhibiting Malaria Sporozoite Infection

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For in vitro experiments, AMD3100 (1 µM; Sigma-Aldrich), anti-HGF (20 µg/ml; R&D Systems), PF184 (500 nM; Tocris), or FR182024 (10 µM; Merck Millipore) was added to cell culture media 4 h before infection. Each inhibitor and medium were changed at 0, 4, and 24 h after infection.
For in vivo experiments, AMD3100 (10 mg/kg) was intraperitoneally injected into mice at 24 and 12 h before infection. After intravenous infection of sporozoites, mice were injected with AMD3100 at 0, 12, and 24 h after infection. According to the manufacturer’s protocol for AMD3100 (also known as Plerixafor; Genzyme Plerixafor Injection Investigator's Brochure, 2009, version 13, May 27, 2009), a half-life of AMD3100 was previously shown to be ∼5–6 h. Also, the manufacturer reported that the effect of AMD3100 in vivo continues four half-life times (∼20–24 h). In addition, our preliminary experiments to test how often normal mice can be treated with AMD3100 suggested that mice treated with AMD3100 (10 mg/kg) every 6 h become unhealthy. Therefore, we decided to administer AMD3100 treatment in mice every 12 h; treatments were performed at 24 h and 12 h before infection and at 0 h, 12 h, and 24 h after infection.
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2

Isolation and Culture of CD34+ Cells

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Umbilical CB samples were collected from full-term deliveries at maternity wards of Lund, Malmö and Helsingborg Hospitals. CB unit collection, mononuclear cell isolation, and CD34+ cell enrichment and culture were carried out as previously described.10 (link) IKKβ inhibitors, PF184 and TPCA1 (Tocris Bioscience), kept in DMSO, were added at a final concentration of 400nM. Control wells were supplemented with DMSO at a matching concentration. Cultures were kept at 37°C and 5% CO2 and the medium (including inhibitors) was refreshed after four days.
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3

Evaluating NF-κB Modulators in Cell Assays

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NF-κB antagonist and agonists: TNFα (315–01A, Peprotech, Rocky Hill, NJ, USA ), Prostratin (5739, Tocris, Bristol, UK), CGS 21680 HCl (1063, Tocris), Betulinic acid (53603, Selleck Chemicals, Houston, TX, USA), PSI (4045, Tocris), Cardamonin (2509, Tocris), Bay 11–7082 (S2913, Selleck Chemicals), Bay 11–7085 (S7352, Selleck Chemicals), RO 106–9920 (1778, Tocris), TPCA-1 (S2824, Selleck Chemicals), Ikk-16 (S2882, Selleck Chemicals), PF 184 (4238, Tocris), IMD 0354 (2483, Tocris), Andrographolide (S2261, Selleck Chemicals), Costunolide (2483, Tocris), CID 2858522 (4246, Tocris), Pictilisib (S1065, Selleck Chemicals), Luteolin (S2320, Selleck Chemicals), Celastrol (1571, Tocris), Artemisinin (2668, Tocris). Cells were plated (at a seeding density of 1x104 for 96 well plates and 1x103 for 384 well plates) 12 h before treatment. Cells were treated with drugs at a range of concentrations either with fresh media (for agonists and vehicle only control) or fresh media with 5ng/ml TNFα (for antagonists and vehicle control) and incubated for 24 h. Each drug dose was performed in triplicate or quadruplicate and experiments were repeated at least three times.
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Optimized Protocols for Cell Signaling Studies

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For western blotting and immunofluorescence, the antibodies used are listed in Supplementary Data Table 2. For cell culture studies, gefitinib (GEF: 1st generation EGFR inhibitor), osimertinib (OSI: 3rd generation EGFR inhibitor), lorlatinib (LOR: ALK inhibitor), trametinib (TRA: MEK inhibitor), GDC0941 (GDC: PI3K inhibitor), ARS1620 (KRASG12C inhibitor), TPCA-1 (IKKβ inhibitor) (all from Selleck), AMG 510 (KRASG12C inhibitor, Chemgood) and PF 184 (IKKβ inhibitor, Tocris Bioscience) were dissolved in DMSO to a final concentration of 10 mmol/L and stored at −20 °C. Unless otherwise specified, 1 μM concentration or 100 nM trametinib and 24 hours treatment time were used for in vitro cell culture experiments. Recombinant Human TNF-alpha was purchased from R&D systems (#10291-TA-020).
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5

Comprehensive Protein Profiling for Cancer Research

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Antibodies against IKKβ, catalase, SOD1, p21, p27, p-Chk1(S345), Chk1, p-Chk2(T68), Chk2, p-H2AX(S139), H2AX, p-ATM(S1981), ATM, MGMT, PARP, Caspase-3, p-p53(S15), p53, survivin, XIAP, cIAP-1, cIAP-2, Mre11, Rad50, p95/NBS1, were purchased from Cell Signaling (Beverly, MA). Antibodies against Bak, Bcl-2, Bcl-xL, GAPDH, and actinin were purchased from Santa Cruz Biotechnology, Inc. Fotemustine and antibody against Flag (M2) was purchased from Sigma. 8-OHdG ELISA kit, mirin and SC-514 for in vivo experiment were purchased from Abcam. SC-514 for in vitro experiment, carmustine and lomustine were purchased from Enzo Life Sciences. PLX4032, BMS-345541, TPCA-1, LY-2409881, AZD3264, IKK-16 and PS-1145 were purchased form Selleckchem ML 120B dihydrochloride and PF184 were purchased from Tocris Bioscience. Crystal violet, propidium iodide (PI), N-acetyl-L-cysteine (NAC), temozolomide, 3-Amino-1,2,4-triazole (ATZ), hydrogen peroxide solution and 3-(4,5-Dimethyl-2-thiazolyl)−2,5-diphenyl-2H-tetrazolium bromide (MTT) were purchased from Sigma. 6-Carboxy-2′,7′-dichlorofluorescein diacetate (DCF) was purchased from Thermo Scientific.
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