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10 protocols using anti e cadherin

1

Immunofluorescence Staining of EMT Markers

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For EMT markers detection, HCEs were fixed with 3.5% paraformaldehyde, permeabilized with 0.1% Triton X-100, blocked with 2% bovine serum albumin (BSA, sigma, USA), and incubated over night at 4 °C with primary antibodies as following: anti-N-cadherin (1:100, Abclonal, China), anti-E-cadherin (1:100) and anti-vimentin (1:100). After washing with phosphate buffered saline (PBS, Gibco), the cells were incubated for 1 h with fluorescein isothiocyanate (FITC)-conjugated mouse immunoglobulin G secondary antibody (1:200). The stained cells were counterstained with 4′, 6-diamidino-2-phenylindole (DAPI, Invitrogen, USA) and viewed under a consistent fluorescence in situ hybridization (FISH) imager (BX51, Olympus, Tokyo, Japan).
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2

Quantitative Western Blot Analysis of Bladder Proteins

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Total protein samples were retrieved from bladder tissues or cultured cells, and their quantity was assessed by a BCA Protein Assay Kit (Invitrogen) after processing in RIPA lysis buffer supplied with protease and phosphatase inhibitors [20 (link), 21 (link)]. For western blot analysis, a 10% SDS-PAGE gel and 30 μg of proteins were packed and transported to a PVDF membrane. Next, the membranes were blocked for 1 h at room temperature with 5% milk before incubation with primary antibodies: anti-GREM1 (#PK12868; 1:1000; Abmart), anti-E-Cadherin (#A20798; 1:1000; Abclonal), anti-N-cadherin (#A19083; 1:1000; Abclonal), anti-Vimentin (#A19607; 1:1000; Abclonal), anti-p-PI3K (#17366; 1:1000; CST), anti-PI3K (#T40064; 1:1000; Abmart), anti-p-AKT (#4060; 1:1000; CST), anti-AKT (#60203; 1:5000; Proteintech) or anti-GAPDH (#AC001; 1:5000; Abclonal) at 4 °C overnight. The following day, the membranes were incubated with peroxidase-conjugated secondary antibody at room temperature for 1 h, pictured by the chemiluminescence system (ChemiDocTM Touch; Bio-Rad, USA), and assessed with the ImageJ program.
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3

Protein Expression Analysis in Cells

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RIPA buffer (Servicebio, China) was used to extract total protein from tissues or cells, and the protein concentration was determined using a bicinchoninic acid assay kit (Boster, China). Protein samples were subjected to electrophoresis and transferred onto a polyvinylidene fluoride membrane. The protein blots were then incubated with the specified primary antibody overnight at 4 °C, as following: anti-α-SMA, anti-Collagen I, anti-N-cadherin, anti-Fibronectin, anti-E-cadherin, anti-Vimentin, anti-β-actin, anti-LC3, anti-p62 and anti-GAPDH (all from Abclonal, China), anti-TFEB, anti-ATP6V0C, anti-CDKN1A, anti-CCNB1, anti-STX17, anti-SNAP29, anti-VAMP8, anti-DNMT3a and anti-DNMT3b (all from Proteintech, USA), anti-p-CDK1 and anti-DNMT1 (both from CST, USA) antibodies, and subsequently incubated with the appropriate secondary antibody horseradish peroxidase (HRP)-conjugated anti-mouse or anti-rabbit immunoglobulin G (IgG) (SAB, USA) for 1h. Blots were visualized through the enhanced chemiluminescence detection system (Bio-Rad, USA).
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4

Protein Extraction and Western Blot Analysis

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Total protein was extracted as described previously.20, 21 Briefly, radioimmunoprecipitation assay (RIPA) lysis buffer (Beyotime, Shanghai, China) was used to extract the total proteins. Subsequently, protein concentration was determined with the BCA Protein Assay Kit (Beyotime). Then, equal quantities of proteins were uploaded and separated on 12% sodium dodecyl sulphate polyacrylamide gel electrophoresis (SDS‐PAGE) gel and transferred into polyvinylidene fluoride membranes (PVDF) (Millipore Corp). Then, the membranes were incubated with 5% non‐fat dry milk powder at room temperature for 2 h and then incubated with primary antibodies as follows: anti‐N‐cadherin (Abcam,1:1000), anti‐vimentin (Abcam, 1:1000), anti‐E‐cadherin (CST,1:800), anti‐FZD5(Abclonal,1:800), anti‐β‐catenin(Abcam, 1:800) and anti‐cyclin D1(Abcam, 1:1000) or overnight at 4°C, followed by HRP‐conjugated secondary antibodies at room temperature for 1 h. The housekeeper gene GAPDH was employed as an internal control. The signals of bands were detected by ECL reagents.
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5

Extracellular Vesicle Protein Analysis

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EVs and cells were lysed with RIPA lysis buffer including protease and phosphatase inhibitors (Boyotime, Beijing, China). Protein concentrations were determined using the Pierce™ BCA Protein Assay kit (Thermo Scientific, USA). Western blots were performed as previously described [46 (link)]. The primary antibodies used in the experiments included anti-CD63 (1:500, Santa Cruz, CA, USA), anti-TSG101 (1:500, Santa Cruz, CA, USA), anti-GM-130 (1:500, Santa Cruz, CA, USA), anti-E-cadherin (1:1000, ABclonal, Wuhan, Hubei, China), anti-N-cadherin (1:1000, Affinity Biosciences, Cincinnati, OH, USA), anti-Snail (1:1000, ABclonal, Wuhan, Hubei, China), anti-α-SMA (1:1000, Cell Signaling Technology, Danvers, MA, USA), anti-PTEN (1:1000, Cell Signaling Technology, USA); anti-PI3K (1:1000, Abcam, USA), anti-Akt, anti-p-Akt (Ser473, 1:1000, Abcam, USA), anti-p-STAT6 (Y641, 1:1000, Abcam, USA), anti-p-Smad2 (1:1000, Abcam, USA), anti-GAPDH (1:1000, ABclonal, Wuhan, Hubei, China), and anti-β-actin (1:1000, Abcam, USA). ImageJ version 1.48 was used to analyze Western blot results [47 (link)].
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6

Exosomal Protein Expression Analysis

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Cells and exosomes were lysed and collected in a protein lysate, and the concentration was measured using a BCA kit (Thermo Fisher Scientific, 23327). Protein samples (30 μg) were electrophoresed, transferred to a nylon membrane and blocked with a blocking buffer. Finally, the cells were incubated with the primary antibody at 4 °C overnight. The antibodies used were anti-HMGB3 (cat:D160490, Sangon Biotech, China), anti-flotillin-1 (cat:ab41927, Abcam, USA), anti-actinin-4 (cat:ab108198, Abcam, USA), anti-Alix (cat:ab186429, Abcam, USA), anti-CD9 (cat:ab92726, Abcam, USA), anti-GAPDH (cat:10494-1-AP, Proteintech, China), anti-E-cadherin (cat:A3044, ABclonal, China), anti-Vimentin (cat:10366-1-AP, Proteintech, China), anti-N-cadherin (cat:A3045, ABclonal, China), anti-HMGB1 (cat:10829-1-AP, Proteintech, China), anti-HMGB2 (cat:14597-1-AP, Proteintech, China) and anti-HMGB4(cat:12787-1-AP, Proteintech, China). Following incubation with a goat anti-rabbit secondary antibody, the immunoreactive proteins were detected with ECL western blotting detection reagents (Millipore, WBKLS0500).
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7

Protein Expression Analysis in Cell Samples

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Cells were scraped and homogenized with Sample Buffer, Laemmli 2x Concentrate (S3401; SIGMA). Protein per sample was separated by polyacrylamide gel electrophoresis and then transferred to nitrocellulose (NC) membrane (GE Healthcare, Piscataway, NJ, USA) and detected with the antibodies. The signals were scanned by AI 680 (GE). Anti-p53 (no.2527S), Anti-Snail (no.3895S), Anti-N-cadherin (no.13116S), Anti-Ubiquitin (no.3933S), Anti-LC3 A/B (no.12741S) and Anti-p62 (no.88588S) were obtained from Cell Signaling Technology (Danvers, MA, USA). Anti-mdm2 (no. A0345) and Anti-E-cadherin (no.A3044) were purchased from Abclonal (Wuhan, China). Anti-β-Actin (no. A1978) and anti-Vimentin (no.V6630) were purchased from Sigma (Sigma, Victoria, BC, Canada).
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8

Western Blot Analysis of Cell Lines

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HT29 and CT26.WT were cultured in a six-well plate for 48 h; total protein was extracted using RIPA buffer (Servicebio, G2002, China) containing protease inhibitors (Servicebio, G2006, China) and quantified using BCA kit (Thermo Fisher Scientific, USA). For each sample, 25 μg total protein was separated by 10% SDS-PAGE and transferred to a PVDF membrane using a wet transfer blotting system (BioRad, Hercules, CA), antibodies such as anti-IRF-1 (Cell Signaling Technology, #8474, USA), anti-IRF-2 (Abcam, ab1274744, USA), anti-E-cadherin (ABclonal, A3044, China), anti-N-cadherin (ABclonal, A0433, China), anti-Vim (ABclonal, A11423, China) were used for western blotting; anti-histone (Abcam, USA) was used as an endogenous control.
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9

Investigating Signaling Pathways in Cell Biology

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The antibodies used are listed below: anti-TRIM11 (#A13887, Abclonal, China), anti-E-cadherin (#A11492, Abclonal, China), anti-Vimentin (#A19607, Abclonal, China), anti-β-catenin (#51,067-2-AP, Proteintech, China), anti-C-myc (#10,828-1-AP, Proteintech, China), anti-Axin2 (#A2513, Abclonal, China), anti-CyclinD1 (#2978, Cell Signaling Technology, USA), anti-GAPDH (#2118, Cell Signaling Technology, USA).
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10

Western Blot Analysis of Autophagy and EMT Markers

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Cell lysates were standardized for protein content, loaded onto SDS-PAGE gel and transferred to PVDF membrane (EMD Millipore). Membranes were probed with rabbit anti-LC3-B (cat. no. GTX127375, GeneTex Inc.,1:2000), anti-p62 (cat. no. A7758, ABclonal Biotech Co., Ltd,1:1000), anti-Atg5 (cat. no. DF6010, Biosciences, 1:1000), anti-MMP7 (cat. no. A0695, ABclonal Biotech Co., Ltd,1:1000), anti-Vimentin (cat. no. A2584, ABclonal Biotech Co., Ltd,1:1000), anti-E-Cadherin (cat. no. A3044, ABclonal Biotech Co., Ltd,1:1000), anti-N-Cadherin (cat. no. A0433, ABclonal Biotech Co., Ltd,1:1000), anti-S-nail (cat. no. A5544, ABclonal Biotech Co., Ltd,1:1000), anti-β-actin (cat. no. AC026, ABclonal Biotech Co., Ltd,1:10 000) antibodies and secondary antibody (cat. no. AS014, ABclonal Biotech Co., Ltd, 1:5000). Antibody binding was detected using an ECL Chemiluminescence Kit (Beijing Solarbio Science & Technology Co., Ltd).
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