The largest database of trusted experimental protocols

6 protocols using ab78494

1

Histological and Immunohistochemical Analysis of Mouse Kidney

Check if the same lab product or an alternative is used in the 5 most similar protocols
Kidney tissues from mice were embedded in paraffin and 4 μm sections were used for Hematoxylin-eosin (HE) staining to detect morphological changes.
To perform immunohistochemical (IHC) staining, paraffin-embedded kidney tissue was deparaffinized in xylene, rehydrated, and blocked with 10% goat serum for 30 min. Rabbit polyclonal anti-KIM-1 (2.5 ug/ml, Abcam, ab78494) primary antibodies were incubated at 4°C overnight and subsequently incubated with HRP-conjugated secondary antibody for IHC.
Frozen sections of mouse’s kidney were cooled to room temperature for 10 min and then blocked with 5% goat serum (Beyotime, Shanghai, China) at room temperature for 1 h. Sections were washed with phosphate-buffered saline (PBS) followed by incubation with primary antibodies against DDIT3 (1:200 dilution, CST, 2895T) and SLC2A3 (1:100 dilution, Santa Cruz, sc74399) overnight at 4°C. After washing for three times with PBS, fluorescent secondary antibodies were added and incubated at room temperature for 1 h. After counterstaining with DAPI (Beyotime, Shanghai, China) for 10 min, sections were sealed under glass coverslips with an anti-fading fluorescence medium (Applygen, Beijing, China). Images were captured with a fluorescent microscope (Nikon, Tokyo, Japan).
+ Open protocol
+ Expand
2

Histological Analysis of Kidney Injury

Check if the same lab product or an alternative is used in the 5 most similar protocols
Tissue sections were stained with hematoxylin and eosin (HE), Periodic acid-Schiff’s (PAS) and Masson’s trichrome stains using standard protocols. The mesangial area was determined from the PAS stained sections and the fibrotic area from the Masson’s trichrome stained sections as previously described28 (link). The antibodies used in this study were those against FXR (sc-13063, Santa Cruz), Grp78 (ab21685, Abcam), Chop (ab59396, Abcam), 4-hydroxynonenal (4-HNE, ab46545, Abcam), Kim-1 (ab78494, Abcam), 8-oxo-2′-deoxyguanosine (8-oxo-dG, ab64548, Abcam), SDHA (#11998, CellSignaling, Danvers, MA, USA), tumor necrosis factor (TNF, ab6671, Abcam), CD4 (sc-7219, Santa Cruz, Dallas, TX, USA), aSMA (NBP1-30894, Novus Biologicals, Littleton, CO, USA) and Collagen I (ColI, NB600-408, Novus Biologicals). TUNEL staining on kidney paraffin sections was performed with an ApopTag kit (Millipore, Billerica, MA, USA), according to the manufacturer’s instructions.
+ Open protocol
+ Expand
3

Immunohistochemical Analysis of Kidney Tissue

Check if the same lab product or an alternative is used in the 5 most similar protocols
Immunohistochemistry was performed on paraffin-embedded tissue sections (3 μm) using endogenous horseradish peroxidase and microwave-based antigen retrieval technique.67 (link) The antibody used in this study included rabbit polyclonal antibody KIM-1 (ab78494; Abcam), p-Smad3 (600-401-919; Rockland), SARS-CoV-2 N protein (ab273167; Abcam). After incubated with the primary antibody overnight at 4°C, the sections were incubated with anti-rabbit EnVision+ System-HRP Labelled Polymer (K4003; DAKO) at room temperature for 60 min, then color was developed with DAB tablet (045-22833; FujiFilm Wako Pure Chemical Corporation) and viewed under a Leica CRT6000 Light Microscope. The positive cells were counted in 10 random areas of kidney sections under the high-power field of the microscope and expressed as cells per square millimeter.
+ Open protocol
+ Expand
4

Histological Evaluation of Kidney Injury

Check if the same lab product or an alternative is used in the 5 most similar protocols
Tissue sections were stained with hematoxylin and eosin (HE) using standard protocols. TUNEL staining was performed with an ApopTag kit (Millipore, Billerica, MA, USA) based on the manufacturer’s instructions. The antibodies for immunohistochemistry used in this study were those against Kim-1 (ab78494, Abcam), 4-hydroxynonenal (4-HNE, ab46545, Abcam), neutrophil gelatinase-associated lipocalin (NGAL, ab63929, Abcam), Ly-6B (NBP2-13077), NFκB p65 (sc-372, Santa Cruz, CA, USA), and MAC387 (ab22506, Abcam). Sections were treated with the Envision+ DAB kit (Dako, Basel, Switzerland) according to the manufacturer’s instructions.
+ Open protocol
+ Expand
5

Immunohistochemical Analysis of Kidney Injury Markers

Check if the same lab product or an alternative is used in the 5 most similar protocols
Mouse kidney tissue was fixed in 4% paraformaldehyde for 3 days and dehydrated using an alcohol gradient. The tissue was then immersed in an ethanol–xylene (1:1) mixture in xylene for 15–20 min until the tissue became transparent. Transparent tissue was placed in a mixture of paraffin and xylene (1:1) for 1 h, followed by paraffin embedding. Paraffin sections were cut into 5-μm-thick sections and dried in a 37°C incubator. The immunohistochemistry kit was purchased from MXB Biotechnologies (KIT-9710 and DAB-0031, China). Renal tissue paraffin slices were washed with water and subjected to antigen retrieval. The slices were then incubated with primary antibodies against Kim-1 (Abcam, 1:200, ab78494), NGAL (Abcam, 1:200, ab70287), and the appropriate biotin-conjugated secondary immunoglobulin G (1:1000, S0001, Affinity, USA). After mounting the slices, co-stained images were captured using a Nikon Eclipse 90i fluorescence microscope.
+ Open protocol
+ Expand
6

Immunofluorescence Analysis of KIM-1 and NLRP3

Check if the same lab product or an alternative is used in the 5 most similar protocols
After routine trypsinization, transfected HK-2 cells were counted and incubated in immunofluorescence chambers at 2 × 105 cells/well. After cell confluence reached 60 − 80%, the cells underwent three PBS rinses for 5 min each time and 15 min fixation with 4% paraformaldehyde. Following three PBS rinses for 5 min each time, the cells were permeabilized with 1% Triton X-100 (diluted in PBS) for 2 min on ice and rinsed with PBS 3 times for 5 min each time. The cells were blocked for 1 h in 5% serum, rinsed three times with PBS for 5 min each time, and probed with primary antibodies against KIM-1 (ab78494, 1:300, Abcam) and NLRP3 (MA5-23,919, 1:100, Thermo Fisher Scientific) prepared with PBS. Afterward, the cells were re-probed with green FITC fluorescence-labeled goat anti-rabbit secondary antibody (ab6717, 1:2000, Abcam) for 1 h at room temperature in the dark. Subsequent to 15 min nuclei staining with DAPI, the cells were observed and photographed using a fluorescence microscope under the same exposure conditions. Each experiment was repeated three times.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!