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Ms 5973n

Manufactured by Agilent Technologies
Sourced in United States

The MS 5973N is a mass spectrometer designed for analytical applications. It provides accurate mass measurements and sensitive detection of various compounds. The core function of the MS 5973N is to perform mass spectrometry analysis.

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10 protocols using ms 5973n

1

GC-MS Analysis of Antimicrobial Compounds

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The fraction demonstrating antimicrobial activity was subjected to GCMS analysis. The samples were injected into GC–MS system (Agilent 6890 N, Santa Clara, CA, USA) fitted with a column (CP-Sil 5 CB column; HP-5 ms; film thickness 0.25 m; internal diameter 0.25 mm) and coupled to a mass-selective detector (MS 5973 N). Ultra-purity helium (99.9%) was used as the carrier gas with flow rate 1.0 mL/min. The sample was injected with split ratio 1.0, column temperature 50 °C, injection temperature 250 °C, total flow rate 6.4 mL/min, column flow rate 1.69 mL/min, mass spectra detected ACQ mode at scan speed 2000, start m/z 40.0, and end m/z 1000.0.
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2

Quantification of Fecal Short-Chain Fatty Acids

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SCFAs levels were determined in the fecal supernatants by means of gas chromatography, as described by Moris et al. [36 (link)]. Briefly, cell free-supernatants (250 μl) from fecal homogenates, prepared as indicated above, were mixed with 100 μl methanol (Merck, Darmstadt, Germany), 50 μl internal standard solution (2-ethylbutyric 1.05 mg/ml) (Sigma-Aldrich, St. Louis, MO, USA), and 50 μl of 20% v/v formic acid (Sigma-Aldrich, St. Louis, MO, USA). The mix was then centrifuged, and the supernatant was used to quantify SCFAs in a system composed of a 6890NGC injection module connected to a flame injection detector (FID) and a mass spectrometry detector (MS, 5973N) (Agilent Technologies, Madrid, Spain).
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3

Quantification of Gut Short-Chain Fatty Acids

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Gas chromatography analyses were performed to determine the concentration of SCFAs, acetic, propionic, butyric, isobutyric, isovaleric, valeric, and caproic acids, in feces following a previously described procedure, with minor modifications [21 (link)]. Briefly, fecal supernatants were diluted with methanol, 20% v/v formic acid, and an internal standard to reach a dilution of 10/65. Next, the dilutions were centrifuged for 10 min at room temperature and 14,000 rpm to obtain the supernatants, which were transferred to suitable chromatography vials. To identify and quantify SCFAs, a chromatograph 6890N (Agilent Technologies Inc., Palo Alto, CA, USA) connected to a mass spectrometry detector (MS) 5973N (Agilent Technologies) and a flame ionization detector (FID) were used. The theoretical detection limit values were calculated for minor SCFAs and applied to samples that were not detectable.
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4

Measurement of PAHs in Samples

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The measurement of different components of PAHs in the samples were performed by a gas chromatography–mass spectrometry (GC 6890, AGILENT, MS 5973N, Mode EI, detector:MS).
Generally, the concentrations 16 different aromatic compounds: Acenaphthylene, Naphthalene, Acenaphthene, Phenanthrene, Anthracene, Fluoranthene, Fluorene, Pyrene, Chrysene, Benzo(b)fluoranthene, Benzo(k)fluoranthene, Benzo(a)anthracene, Benzo[a]pyrene, Indeno(1,2,3,cd)pyrene, Benzo(g.h.i)perylene, Dibenz[a,h]anthracene were analyzed according to EPA method 3500C21 (link) and National standard of Iran (19,238)22 .
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5

GC-FID and MS Analysis of SCFAs

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The analysis of SCFA was carried out in a chromatographic system composed of a 6890N GC (Agilent Technologies Inc., Palo Alto, CA, USA) connected to a FID and a MS 5973N detector as described previously14 (link).
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6

GC-MS Analysis of Volatile Organic Compounds

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SPME fiber containing the adsorbed analytes was introduced into the split–splitless injector of the gas chromatograph (GC 6890 N; Agilent, Santa Clara, CA, United States) coupled to the mass spectrometer (MS 5973 N; Agilent, Santa Clara, California, United States). The thermal desorption of the analytes occurred at 250 ° C for 10 min. The oven temperature was maintained at 50°C for 2 min and increased from 50°C to 150°C at 10°C/min and from 150°C to 280°C at 15°C/min. The injection and ion source temperatures were 250°C and 230°C, respectively, and helium (99.999%) was used as a carrier gas with a flow rate of 1 ml min−1. The gas chromatograph was equipped with a capillary column (30 m × 0.250 mm) coated with a 0.25 μm 5% diphenyl/95% dimethylpolysiloxane film (Supelco®, Bellefonte, PA, United States). The mass spectrometer was set at 70 eV. Identification of VOCs identification was performed using the National Institute of Standards and Technology (NIST) Atomic Spectra Database version 1.6 (U.S. Department of Commerce, Gaithersburg, Maryland, United States).
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7

Quantification of SCFA and BCFA in Feces

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SCFA and BCFA levels were determined in the fecal supernatants by means of gas chromatography, as described by Moris et al.77 (link) Briefly, 250 μl of cell free-supernatants were mixed with 100 μl methanol, 50 μl internal standard solution (2-ethylbutyric 1.05 mg/ml), and 50 μl of 20% v/v formic acid. The mix was then centrifuged, and the supernatant was injected into a system composed of a 6890NGC injection module (Agilent Technologies Inc., USA) connected to a flame injection detector (FID) and a mass spectrometry detector (MS, 5973 N) (Agilent) for quantification of both SCFA and BCFA.
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8

Gas Chromatography-Mass Spectrometry Analysis

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An Agilent 6890N gas chromatograph coupled with a mass spectrometer (MS 5973N, Agilent Technologies, Santa Clara, CA) was used in this study. First, one μL of SAFE extracts or SPME fiber extracts was injected in splitless mode onto both DB-wax column (60 m length, 0.25 mm i.d., 0.25 μm film thickness, J&W Scientific, Folsom, CA, USA) and DB-5ms column (60 length, 0.25 mm i.d., 0.25 μm film thickness, J&W Scientific, Folsom, CA, USA), respectively. Helium was used as the carrier gas with flow rate of 1 mL/min. The temperature program parameters of mass spectrometer were the same as our newly published paper [26 (link)].
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9

Fractional Synthesis Rates of Proteins

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In vivo fractional synthesis rates (FSR) of proteins in the gastrocnemius muscle and liver were determined using the [ 13 C]-valine flooding dose method as previously described (Chevalier et al., 2013; Oberli et al., 2015) . Briefly, the protein-bound and free amino acid fractions were separated in each tissue. [ 13 C]-valine enrichment in the free amino acid fraction was estimated by gas chromatography (GC 6890N, Agilent Technologies) coupled to mass spectrometry (MS 5973N, Agilent Technologies) (GC-MS). Enrichment in [ 13 C]-valine in protein bound amino acid fraction was analyzed using a GC-C-IRMS. The FSR of proteins (expressed in %/day) in the liver and muscle was calculated as described previously (Tessier et al., 2019) .
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10

PAHs Extraction and Analysis

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The extraction of PAHs was performed with an acetone/hexane mixture (1:1) through a microwave assisted solvent extraction (Milestone s.r.l., model Ethos D, Sorisole (BG), Italy). The extracted samples were analyzed using an Agilent 6890 PLUS gas chromatograph (Agilent Technologies, Inc., Santa Clara, CA USA) equipped with a programmable temperature vaporization injection system (PTV) and interfaced with a quadrupole mass spectrometer, operating in electron impact ionization (Agilent MS-5973 N). The identification of each PAH (Benzo(a)Anthracene B(a)A, Benzo(b) Fluorene B(b)F, Benzo(jþk)Fluorene B(jþk)F, Benzo(a)Pyrene B(a)P, Benzo(g)Perylene B(g)P, Indeno Pyrene IP and DiBenzoAnthracene DBA) was performed using Perylene-D12 (PrD, 264) as the internal standard (IS). The analytical performance of the whole procedure (extraction recovery, extraction linearity, analytical repeatability, LOD) was verified in our previous study (Bruno et al., 2007) .
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