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Rneasy protocol

Manufactured by Bio-Rad

The RNeasy protocol is a laboratory technique used for the extraction and purification of ribonucleic acid (RNA) from biological samples. The core function of this protocol is to provide a reliable and efficient method for isolating high-quality RNA that can be used in downstream applications such as gene expression analysis, reverse transcription, and other molecular biology experiments.

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2 protocols using rneasy protocol

1

Quantification of AT1R Expression in Mesenteric Arteries

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The mesenteric arteries were dissected from the intestinal wall and placed in phosphate buffered saline at 4°C. Under an Olympus dissecting microscope, the fat and veins were removed from the vessels, and the tissue was snap frozen in a dry ice–methanol bath and transferred to a −80°C freezer until further use. Ceramic microbeads were used to homogenize the vessels. Total RNA was extracted according to the RNeasy protocol (Bio‐Rad, Hercules, CA). High‐capacity cDNA reverse transcription (Applied Biosystems, Foster City, CA) was used to reverse transcribe the purified RNA (1 µg). Real‐time polymerase chain reaction was used to quantitate AT1R cDNA with an ABI Prism 7700 Sequence Detection System (Applied Biosystems, Foster City, CA). The polymerase chain reaction reaction mixture consisted of RNase‐free water, SYBR green supermix and 300 nmol/L specific primers as previously described14: angiotensin type 1 receptor (AT1R)F: 5′‐CTC AAG CCT GTC TAC GAA AAT GAG‐3′; R: 5′‐TAG ATC CTG AGG CAG GGT GAA T‐3′; and, beta‐actinF: 5′‐CCCATCTATGAGGGTTACGC‐3′, R: 5′TTTAATGTCACGCACGATTTC‐3′. Standard curves were used to calculate the AT1R cDNA in mesenteric arteries.
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2

RNA Extraction and qPCR Analysis of Immune Genes

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Animal tissues/25 µl of whole blood were collected in 350 µl of RLT buffer (QIAGEN RNeasy mini kit). Soft tissues were homogenized using an electric pellet pestle (Kimble Chase LLC, USA). For ankle joints, skin and muscles were first removed, and the joints were then chopped into small pieces with a scissor in RLT buffer. RNA was extracted following the QIAGEN RNeasy protocol and, reverse-transcribed into cDNA using the BIO-RAD iScript™ cDNA Synthesis Kit. Quantitative RT-PCR was performed with gene-specific primers and 6FAM-TAMRA (6-carboxyfluorescein–N,N,N,N-tetramethyl-6-carboxyrhodamine) probes or SYBR Green. Results were calculated using the –ΔΔCt method and beta-actin gene as an internal control. The qPCR primers and probes for immune genes were reported in our previous studies64 (link),68 (link). The Taqman gene expression assays for Ifit1 (Mm00515153_m1), Oas1a (Mm00836412_m1), Isg15 (Mm01705338_s1), Ifit2 (Mm00492606_m1), and Cxcl10 (Mm00445235_m1) were obtained from ThermoFisher Scientific. The other qPCR primers are summarized in Supplementary Table 1.
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