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8 protocols using anti cd25 apc cy7

1

Phenotypic and Functional Profiling of T Cells

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For suppression assays, cells were washed with 0.1% (w/v) sodium azide/phosphate-buffered saline (Mediatech Cellgro) on day 7 of in vitro stimulation and were stained with anti-CD4 PECy5 (BD Pharmingen), anti-CD8 Pacific Blue (Biolegend), and anti-CD25 APCCy7 (BD Pharmingen. For surface phenotyping of cells, bulk PBMCs and enriched CD8+ T cells were stained with anti-CD3 Alexa 700 (BD Pharmingen), anti-CD8 AmCyan (BD Biosciences), anti-CD27 APCCy7 (Biolegend), anti-CD28 APC (BD Pharmingen), CD45RO Pacific Blue (Biolegend), anti-CD62L PECy5 (BD Pharmingen), and anti-CD57 PE (Southern Biotech). For intracellular staining of cytokines, cells were initially activated with 1 μL of leukocyte activation cocktail (BD Pharmingen) for 5 hours. Cells were surface stained with anti-CD8 APC (BD Biosciences), anti-CD4 PECy5 (BD Pharmingen) and anti-CD25 APCCy7 (BD Pharmingen) and permeabilized as described previously. Intracellular staining was performed using anti-IFNγ PECy7 (BD Pharmingen), anti-IL-17A PE (Ebioscience), anti-Granzyme B Alexa 700 (BD Pharmingen) and anti-Perforin Pacific Blue (BD Pharmingen). All cells were resuspended in 1% paraformaldehyde (Electron Microscopy Sciences, Hatfiled, PA) for FACS analysis. Flow cytometric data were acquired on a 4-Laser, 17-color LSRII using FACSDiva software (Becton Dickinson). CFSE was detected in the FITC channel on the LSR.
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2

Multiparametric Flow Cytometry for Immune Cell Profiling

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Surface staining was performed using following antibodies: FITC-anti-CD4 (Clone RM4-5; 1:200), PerCP-anti-CD8 (Clone 53-6.7; 1:100), PacBlue-anti-B220 (Clone RA3-6B2, 1:200), APC-Cy7-anti-CD25 (Clone PC61, 1:200), PE-anti-CD44 (Clone IM7, 1:200), and APC-anti-CD86 (Clone B7-2, 1:200) (all from BD Biosciences, San Jose, CA, USA).
For intracellular staining, cells were restimulated for 5 h with 10 ng/ml phorbol myristate acetate and 1 µg/ml ionomycin, in a tissue culture incubator at 37°C (both Sigma-Aldrich). Ten micrograms per milliliter brefeldin A (Sigma-Aldrich) were added to the cell suspensions after 1 h of polyclonal restimulation. Then cells were treated with LIVE/DEAD Fixable Aqua Dead Cell Stain kit (Life Technologies) and hereafter fixed with 2% paraformaldehyde (Sigma-Aldrich) for 20 min at room temperature. Cells were stained in 0.5% saponin (Sigma-Aldrich) using following antibodies: PacBlue-anti-CD4 (Clone RM4-5; 1:400), PE-Cy7-anti-IFN-γ (Clone XMG 1.2; 1:400) (both from BD Biosciences), FITC-anti-IL17A (Clone TC11-18H10.1; 1:200, BioLegend, San Diego, CA, USA), PE-anti-IL10 (Clone JESS-16E3; 1:100), and APC-anti-IL22 (Clone IL22JOP; 1:100) (both from eBioscience). All data were acquired on a MACSQuant analyzer (Miltenyi Biotec, Bergisch Gladbach, Germany) and were analyzed with FlowJo Software v10.1 (Tree star, Ashland, OR, USA).
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3

Phenotyping of T/CAR-T cells

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T/CAR-T cells were centrifuged at 300×g for 5 minutes and resuspended in 100 μL PBS with 2% FBS. The T/CAR-T cells were stained at 4°C for 30 minutes with the following surface marker-specific antibodies: APC/Cy7-anti-CD25 (BD Pharmingen, San Diego, CA, USA), APC-anti-CD69 (BioLegend, San Diego, CA, USA), PE-anti-CD4 (BD Pharmingen), PE/Cy7-anti-CD8 (BioLegend), PE-anti-CD45RO (BD Pharmingen), APC-anti-CD62L (BD Pharmingen), PE-anti-PD-1 (BioLegend), PE/Cy7-anti-CTLA-4 (BioLegend), APC-anti-TIM-3 (BioLegend), and APC anti-human CD127 (BioLegend). The cells were then washed twice and resuspended in 400 μL PBS with 2% FBS for flow cytometry.
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4

CD4+ T Cell Polarization Assay

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Naïve CD4+ T cells were sorted from mouse splenocytes as described above. 200,000 cells were stimulated with 4 µL/well CD3/CD28 Dynalbeads in 96 well U bottom plates in 200 µL XVIVO-20 media in the presence of CA or DMSO vehicle control. TGF-β was added to some wells. On days 2 and 4, 100 µL of media were removed, and 100 µL of 2× cytokine/metabolite were re-added. On day 5, Dynalbeads were removed magnetically and cells were stained for flow analysis. Cells were stained with anti-CD4-QDot 605, anti-CD8-PeCy5.5, Aqua viability dye, anti-CD3-PB, and anti-CD25-APCCy7 (BD). Cells were fixed and permeabilized with the FOXP3/Transcription Factor Staining Buffer Set (eBioscience) and stained intranuclearly with anti-FOXP3-PE (eBioscience).
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5

Multiparameter Flow Cytometry Immunoassay

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Antibodies used for surface staining included anti-CD14 Qdot 655, anti-CD20 Qdot 655, anti-CD4 PeCy5.5, anti-CD8 Qdot605 (Invitrogen; Carlsbad, California), anti-CD14 BV650, anti-CD20 BV650 (Biolegend; San Diego, California), anti-CD28 ECD (Beckman Coulter; Fullerton, CA), anti-CD25 APC-Cy7, anti-CD95 PE-Cy5, and anti-HLA-DR APC (BD Pharmingen; San Diego, California). Antibodies used for intracellular staining included anti-interleukin-2 (IL-2) Alexa700 (Biolegend), anti-interferon-gamma (IFNγ) Alexa 700 (Invitrogen), anti-tumor necrosis factor-alpha (TNFα) Alexa 700, anti-CD3 Pac Blue, anti-CD69 PE, and anti-Ki67 FITC (BD Pharmingen).
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6

Comprehensive Immune Cell Profiling in Sepsis

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Mice were sacrificed and spleens were harvested at 24h after CLP. Splenocytes were stained with anti-CD3-Alexa 700 (BD), anti-CD4-PB (Biolegend, clone RM4–5), anti-CD8-PO (Invitrogen, clone MCD0830), anti-CD44-PerCP (Biolegend, clone IM7), anti-CD62L-PE (BD), anti-CD28-PE-Cy7 (Biolegend, clone E18) and anti-CD25-APC-Cy7 (BD). For detection of cell apoptosis, splenocytes were stained with a FITC Annexin V apoptosis detection kit with 7-AAD (Biolegend). Anti-Bcl-xL (54H6) and Bcl-2 (Biolegend, clone BCL/10C4) were used to detect engagement of the mitochondrial pathway of apoptosis while anti-CD95 (Biolegend, clone DX2) and anti-TNFR Type Ⅰ (Biolegend, clone 55R-286) were stained to detect expression of death receptors on T cells. Cells were intracellularly stained with anti-Ki-67 (Biolegend, clone 16A8) to assay for cell proliferation. Tregs were identified via intracellular staining for Foxp3-FITC (Ebioscience, clone FJK-16S) using the Foxp3 staining kit (Ebioscience). B cells were stained with anti-CD19-FITC (Biolegend). NK cells were stained with anti-NK1.1-PE (Ebioscience). Dendritic cells were stained with anti-CD11c-PE-Cy7 (BD). Neutrophils were stained with anti-Gr-1-Alexa 700 (Biolegend) and anti-CD11b-PerCP (Biolegend). Accucheck Counting Beads (Thermo Fisher Scientific) were added after staining to calculate the absolute number of cells per spleen.
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7

Multiparameter Flow Cytometry of Immune Cells

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RBCs were lysed using appropriate buffer (BD Pharm Lyse™, #555899, BD Biosciences, Franklin Lakes, NJ). Each sample was adjusted to a concentration of 107 WBCs/mL with cold (4°C) FACS buffer (PBS with 2% BSA), and a 100 μL aliquot was placed into a polystyrene tube. Aliquots of stock antibody solutions (20 μL) of anti‐CD45+ APC/Cyanine7, anti‐CD3+ FITC, anti‐CD4+ PE/Cyanine7, anti‐CD8+ APC, anti‐CD197(CCR7)+ APC/Cyanine7 (BioLegend, San Diego, CA, USA), and anti‐CD14+ PE, anti‐CD69+ PE, anti‐CD45RA+ PE, anti‐CD25+ APC‐Cy™7 (BD Biosciences), were added to each sample, and samples were incubated at 4°C for 30 min in the dark. Next, samples were washed (twice) with 2 mL of FACS buffer by centrifugation at 300 × g for 5 min at 4°C. The supernatant was discarded, and labeled cells were re‐suspended in 100 μL of FACS buffer. A 5 μL aliquot of the viability dye (7AAD, BioLegend) was added to each sample and incubated for 10 min at room temperature in the dark. Samples were analyzed using a flow cytometer (Novocyte 2006R, Ace Bioscience, San Diego, CA, USA) with all necessary controls (unstained and compensation).
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8

Multiparametric Flow Cytometry Analysis

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For surface staining, cells were stained with anti-CD3 PerCP-Cy5.5, anti-CD4 APC, anti-CD25 APC-Cy7, anti-CD69 Pe-Cy7, anti-PD-1 BV421, and anti-CD38 Alexa Fluor 488 (all from BD Biosciences, San Diego, CA, USA). Cells were then incubated for 15 minutes under room temperature and were fixed with 1% formaldehyde for 15 minutes. For intracellular staining, cells were permeabilized (Cytofix/Cytoperm TM Fixation/Permeabilization Solution Kit, BD Biosciences) for 40 minutes and stained with anti-FoxP3 Alexa Fluor 488, anti-CTLA-4 BV605, and anti-IL-10 APC. All the samples were analyzed using an LSRFortessa flow cytometer (Becton-Dickinson, San Jose, CA, USA) and analyzed by FlowJo software (FlowJo, Tree Star, Ashland, OR, USA).
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