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36 protocols using sodium pyruvate

1

Establishment and Characterization of Mel202 Uveal Melanoma Cell Line

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Primary uveal melanoma cell line Mel202 was established from a uveal melanoma patient as described [49 (link)]. Mel202/DR1/CD80 vaccine cells were produced as described [7 (link), 10 (link)]. Briefly, Mel202 cells were retrovirally transduced and selected to stably express HLA-DR1 and CD80. The vaccine HLA-DR1 genotype is HLA-DRB1*0101. Cell lines were cultured at 37°C, 5% CO2. Cells were grown in RPMI 1640 (ThermoFischer) with 1% L-Glutamin (ThermoFischer), 1% sodium pyruvate (PAN-Biotech, Germany), 1% MEM (PAN-Biotech), 0,4% MEM Vitamin Solution (choline chloride, folic acid, myo-inositol, niacinamide, D-pantothenic acid (hemicalcium), pyridoxal-HCL, riboflavin, thiamine-HCL, sodium chloride) (PAN-Biotech), 0,4% PenStrep (ThermoFischer), 0,1% mercaptoethanol (ThermoFischer) and 10% heat inactivated fetal bovine serum (FBS) (C-C-Pro, Germany). Blood samples and PBMC: Blood samples were obtained from healthy donors by leukapheresis. All cell lines and procedures with human materials were approved by the Institutional Review Boards of the participating institutions.
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2

Culturing Pancreatic Cancer Cell Lines

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The human pancreatic cancer cell lines MIA PaCa-2, AsPC-1, PANC-1 and BxPC-3 were purchased from American Type Culture Collection (CRL-1420TM, CRL-1682, CRL-1469 and CRL-1687, respectively, ATCC; Rockville, MD, USA) and banked at Centre Paul Strauss. Cells were cultured at 37 °C in a humidified atmosphere containing 5% CO2 and 95% air. PANC-1 was cultured in Dulbecco’s modified Eagle’s medium (DMEM; PAN Biotech GmbH, Aidenbach, Germany) supplemented with 10% fetal bovine serum (FBS, PAN Biotech GmbH) and 1% of a solution of penicillin (10000 IU/mL) and streptomycin (10 mg/mL) (PAN Biotech GmbH). MIA PaCa-2 was cultured in the same conditions with 1% of 4-(2-hydroxyethyl)-1-piperazineethanesulfonic acid (HEPES, 1 mM, PAN Biotech GmbH), 1% of sodium pyruvate (10 mM, PAN Biotech GmbH) and 1% of non-essential amino acids (NEAA, PAN Biotech GmbH). AsPC-1 and BxPC-3 were cultured in Roswell Park Memorial Institute medium (RPMI; PAN Biotech GmbH) supplemented with 10% FBS, and 1% of a solution of penicillin (10000 IU/mL) and streptomycin (10 mg/mL). Subconfluent cell monolayers were trypsinized once a week using 0.5% trypsin containing 2% EDTA (PAN Biotech GmbH) and plated at passage ratios between 0.25:10 to 1:10, according to the cell line or used directly for study after enumeration determined with a Countess® Cell Counter (Countess, Invitrogen, Carlsbad, CA, USA).
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3

Equid herpesvirus type 1 with RFP and eGFP

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Equid herpesvirus type 1 strain RacL11 EHV-1-RFP [9 (link)] with a red fluorescent protein (RFP) fused to the small capsid protein VP26 [3 (link)] was used in this study. The virus further expresses the enhanced green fluorescent protein (eGFP) for efficient identification of infected cells. The virus was grown on primary equine dermal (ED) cells (CCLV-RIE 1222, Federal Research Institute for Animal Health, Germany) as described before [3 (link)]. The cells were propagated in Isocove’s Liquid Medium with stable glutamine (Pan-Biotech GmbH) supplemented with 20% fetal calf serum (Pan-Biotech GmbH), 0.5% penicillin (Roth), 0.5% streptomycin (Alfa Aesar), 1% sodium pyruvate 100 mM (Pan-Biotech GmbH), and 1% nonessential amino acids (Merck KGaA). For microscopy experiments, virus was purified by ultracentrifugation over a 30% sucrose solution followed by sucrose step gradient ultracentrifugation exactly as described before [10 (link)].
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4

Culturing Hek-293 cells in DMEM

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Hek-293 cells (German collection of microorganisms and cell cultures, Braunschweig, Germany) were maintained in Dulbecco's modified Eagle's medium (DMEM) containing 4.5 g/L glucose, 4 mM L-glutamine, 1 mM sodium pyruvate (PAN Biotech, Aidenbach, Germany), 10% fetal calf serum (Gibco, via Thermo Fisher, Darmstadt, Germany), 100 U/mL penicillin, and 100 μg/mL streptomycin (PAN Biotech, Aidenbach, Germany). Cells were grown in 5% CO2 at 37°C under a humidified atmosphere. All cell-culture plasticware was purchased from Sarstedt (Nuembrecht, Germany). For all cell culture assays, vehicle controls were performed and did not affect any of the parameters measured.
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5

Establishing Melanoma Cell Cultures

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Melanoma cell cultures were established from surplus cerebral melanoma metastases after having obtained written, informed consent approved by the local IRB (EK647 and EK800). Cells were grown in RPMI (Sigma RPMI-1640, #R0883) supplemented with 5 mM l-glutamine (gibco l-glutamine, #25030), 1 mM sodium pyruvate (Sigma sodium pyruvate, #S8636) and 10% FBS (PAN biotech FBS Premium heat inactivated, #P30-1902, Aidenbach, Germany). Culture medium was changed every 2–3 days to ensure optimum conditions of growth, using aseptic techniques and a laminar flow bench. Cells were tested for mycoplasma contamination (Invivogen PlasmoTest Mycoplasma Detection Kit, #rep-pt) prior to their use for the described techniques.
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Cell Culture Media Formulations

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Dulbecco modified Eagle medium (DMEM) was supplemented with 10% fetal bovine serum (FBS) (Invitrogen), 1 mM sodium pyruvate (Pan-Biotech GmbH, Aidenbach, Germany) and 30 mM HEPES. RPMI 1640 medium was supplemented with 5% FBS (Invitrogen), nonessential amino acids (Gibco/Thermo Fisher Scientific), and 2 mM l-glutamine (Lonza, Walkersville, MD).
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7

Cell Culture Protocols for SARS-CoV-2 Research

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Vero E6 cells (Cercopithecus aethiops-derived epithelial kidney cells, ATCC) were grown in Dulbecco’s modified Eagle’s medium (DMEM; Gibco, catalog no. 41965039) supplemented with 2.5% heat-inactivated fetal calf serum (FCS; Gibco, catalog no. 10270106), 100 units/ml penicillin, 100 μg/ml streptomycin (Thermo Fisher, catalog no. 15140122), 2 mM l-glutamine, 1 mM sodium pyruvate (Pan Biotech, catalog no. P04-8010), and 1× nonessential amino acids (Sigma, catalog no. M7145). Caco-2 cells (human epithelial colorectal adenocarcinoma cells, kindly provided by H. Barth, Ulm University) were grown in the same media but with supplementation of 10% FCS. Calu-3 cells (human epithelial lung adenocarcinoma cells, kindly provided by M. Frick, Ulm University) were cultured in minimum essential Eagle medium (MEM; Sigma, catalog no. M4655) supplemented with 10% FCS (during viral infection) or 20% FCS (at all other times), 100 units/ml penicillin, 100 μg/ml streptomycin, 1 mM sodium pyruvate, and 1× nonessential amino acids. NHLF cells (primary human lung fibroblasts; Lonza), HEK293T ZAP KO cells (10 (link)), and A549 cells (adenocarcinoma human alveolar basal epithelial cells; ATCC) were cultured in DMEM supplemented with 10% FCS, 2 mM μg/ml l-glutamine, 100 units/ml penicillin, and 100 μg/ml streptomycin.
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8

Cell Culture Protocol for Immune Studies

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CHO, 3T3-L1, RAW 264.7 BLUE and B16/F0 cells were obtained from American Type Culture Collection (ATCC, Manassas, VA, USA). CHO cells were cultured in HAM/F12 medium, while 3T3-L1, Raw 264.7 Blue and B16/F0 cells were cultured in Dulbecco’s Modified Eagle’s Medium (DMEM) supplemented with 25 mM glucose, 10% heat-inactivated fetal bovine serum (FBS, PAN Biotech, Aidenbach, Germany, 3302 P290907), L-glutamine (2 mM Biochrom AG, Berlin, Germany, K0282), 0,1 mg/mL penicillin–streptomycin (PAN Biotech, P0607100), 1 mM of sodium pyruvate (PAN Biotech, Aidenbach, Germany, P0443100) and 0.5 µg/mL of amphotericin B (PAN Biotech, Aidenbach, Germany P0601001).
Recombinant mouse IFN-γ and Human TGF-β1 (cross-active for mouse cells) were purchased from Peprotech, while LPS was obtained from Sigma (Darmstadt, Germany).
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9

Cell Culture Conditions for Various Cell Lines

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Vero cells (clone E6, CCLV-RIE-929/25) were cultivated in MEM with Earle’s salts (Capricorn Scientific, Ebsdorfergrund, Germany) supplemented with 2 mM stable L-glutamine (Capricorn Scientific), 100 U/mL penicillin, 100 µg/mL streptomycin (Capricorn Scientific), and 10% fetal bovine serum (FBS) (Capricorn Scientific) at 37 °C in 5% CO2. C6/36 (CCLV-RIE-1299) cells were grown in Schneiders Drosophila media (PAN-Biotech, Aidenbach, Germany) supplemented with 2 mM stable L-glutamine (Capricorn Scientific), 1 mM sodium pyruvate (PAN Biotech), 1X MEM NEAA (PAN Biotech), 100 U/mL penicillin, 100 µg/mL streptomycin (Capricorn Scientific), and 10% FBS (Biowest, Riverside, MO, USA) at 28 °C. The suspension cell line FreeStyle™ CHO-S (Thermo Fisher Scientific, Waltham, MA, USA) was cultivated in FreeStyleTM CHO medium (Thermo Fisher Scientific) supplemented with 8 mM stable L-glutamine (Capricorn Scientific), 100 U/mL penicillin, 100 µg/mL streptomycin (Capricorn Scientific) at 37 °C, and 5% CO2 on an orbital shaker.
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10

Culturing and Characterizing Human Cell Lines

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The following human cell lines were used: colorectal, T84; lung, NCI-H358; ovarian, SKOV3; gastric, AGS; esophageal, OE33; hepatoma, Huh7 and breast, MCF7; all of them being obtained from the American Type Culture Collection (ATCC; Rockville, MD, USA). T84 were cultured in DMEM-F12 medium (PAN-Biotech). SKOV3, OE33, NCI-H358 were cultured in RPMI medium (PAN-Biotech). MCF-7 were cultivated in MEM Eagle with EBSS medium (PAN-Biotech). AGS were cultivated in F12-K medium (Mediatech, Inc.) and Huh7 were cultivated in α-MEM medium (Sigma-Aldrich) supplemented with non-essential amino acids (Gibco) and sodium pyruvate (PAN-Biotech). All culture medium were supplemented with 10% foetal calf serum (PAN-Biotech) and 1% v/v penicillin/streptomycin (PAN-Biotech). Absence of mycoplasma infection was confirmed by regular testing.
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