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70 protocols using ab209845

1

Quantitative Analysis of Apoptosis and Inflammation Markers

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Total protein was isolated from MPC5 cells using RIPA buffer (Thermo Fisher Scientific, Waltham, MA, USA) and quantitated using a BCA protein quantification kit (Abcam, Cambridge, UK), and the proteins were separated via 10% SDS‒PAGE. Then, the proteins were transferred to PVDF membranes (Roche, Basel, Switzerland). After being sealed with 5% nonfat milk and washed three times with TBST, the membranes were incubated with primary antibodies against Bax (1:1,500, ab182733; Abcam, Cambridge, UK), Bcl-2 (1:2,000, ab182858; Abcam, Cambridge, UK), α-SMA (1:400, MA5-14084; Thermo Fisher Scientific, Waltham, MA, USA), podocin (1:800, PA5-79757; Thermo Fisher Scientific, Waltham, MA, USA), synaptopodin (1:1,000, ab259976; Abcam, Cambridge, UK), p-p65 (1:800, MA5-15160), NLRP3 (1:800, ab263899), cleaved caspase-1 (1:1,000, PA5-99390; Thermo Fisher Scientific, Waltham, MA, USA), GSDMD (1:900, ab209845; Abcam, Cambridge, UK), and β-actin (1:8,000, MA1-140; Thermo Fisher Scientific, Waltham, MA, USA) for 1 h at room temperature. After being washed three times with TBST, the membranes were incubated with HRP-conjugated secondary antibodies (1:7,000) for 1 h, and then the immunoblots were visualized using an ECL kit (Roche, Basel, Switzerland) and quantitated using ImageJ software (Bethesda, Rockville, MD, USA).
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2

Signaling Blot Protein Detection

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For signaling blots, the supernatant was removed, and cells were lysed in radioimmunoprecipitation assay (RIPA) buffer containing protease and phosphatase inhibitors plus 4× Laemmli sample buffer. Caspase and GSDMD cleavage were measured from the combined cell lysate and supernatants. Proteins were separated via SDS-PAGE with 8 to 12% polyacrylamide gels, transferred to polyvinylidene difluoride (PVDF) membranes (IPVH00010, Millipore), and blocked with 5% nonfat dry milk. Primary antibodies against caspase-1 (AG-20B-0042-C100, Adipogen), caspase-3/cleaved-caspase-3 (9662 and 9661, CST), caspase-7/cleaved-caspase-7 (9492 and 9491, CST), caspase-8/cleaved-caspase-8 (4927, CST and AG-20T-0138-C100, Adipogen), caspase-9 (9504, CST), GSDMD (ab209845, Abcam), p-RIPK3 (91702, CST), RIPK3 (2283, ProSci), p-MLKL/MLKL (37333 and 37705, CST), and β-actin (4970, CST) were incubated overnight at 4°C followed by appropriate secondary antibodies conjugated with horseradish peroxidase (HRP) incubated for 1 h at room temperature (Jackson ImmunoResearch, West Grove, PA). Membranes were visualized using Luminata Forte Chemiluminescence substrate (WBLUF0500, Millipore) or SuperSignal West Femto substrate (34096, Thermo Fisher Scientific) on a Bio-Rad ChemiDoc.
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3

Protein Extraction and Immunoblotting Protocol

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Cells were lysed in RIPA lysis buffer (20 mM Tris-HCl, pH 7.4, 137 mM NaCl, 10% glycerol, 1% Triton X-100, 1 mM Na3VO4, 1 mM NaF, 2 mM ethylenediaminetetraacetic acid [EDTA], 200 nM aprotinin, 20 μM leupeptin, 50 mM phenanthroline, and 280 mM benzamidine-HCl) and supernatant fractions were collected. Protein concentrations were measured with bicinchoninic acid (Pierce, Rockford, IL, USA), and equal amounts of proteins (50 μg/lane) were separated by 13% sodium dodecyl-sulfate polyacrylamide gel electrophoresis and transferred to the nitrocellulose membranes (GE Healthcare Life Science, Pittsburgh, PA, USA) incubated with a specific antibody. The anti-caspase-1 antibody (3019-100; BioVision, Milpitas, CA, USA, and AG-20B-0042; AdipoGen, San Diego, CA, USA) and anti-GSDMD antibody (ab209845; Abcam PLC) were used as primary antibodies. These antibodies were used at a dilution of 1:1,000. The anti−ACTB antibody (A5441) was acquired from Sigma−Aldrich (Merck KGaA) and used at a dilution of 1:5000. Secondary antibodies (anti−rabbit IgG [1:2000 diluted; sc−2004] and anti−mouse IgG [1:2000 diluted; sc−2005]) were purchased from Santa Cruz Biotechnology, Inc. (Dallas, TX, USA). Bands were detected using the Immobilon Western Chemiluminescent HRP Substrate (EMD Millipore, Darmstadt, Germany).
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4

Western Blot Analysis of Cell Fractions

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Different cell fraction including total cell lysate, mitochondria lysate or cytosol fraction were prepared, respectively. The radio immunoprecipitation assay (RIPA) lysis buffer were added to each cell fraction with mixture of protease inhibitor cocktail. The concentration of proteins in different sample was measured by BCA (bicinchoninic acid) assay kit method. Total protein was separated on a 12% SDS‐PAGE, and then the gel was transferred to polyvinylidene difluoride membranes. Afterwards, the membrane was diluted by TBS and blocked by skim milk. Then, membranes were incubated with primary antibodies of GSDMD (1:1000, ab209845, Abcam), cleaved Caspase‐1 p20 (1:1000, 4199, CST), LC3B (1:1000, 2775, CST), sequestosome‐1 (SQSTM1/p62) (1:1000, 5114, CST), COX‐4 (1:1000, CST), cleaved GSDMD‐N (1:1000, Abcam, EPR20829‐408), β‐Actin (1:5000, 12620, CST), GAPDH (1:5000, 8884, CST), Parkin (1:1000, 4211, CST), or Pink1 (1:1000, ab23707, abcam) at 4°C overnight. Non‐horseradish peroxidase (HRP) conjugated primary antibody was incubated with HRP‐conjugated secondary antibody and the protein‐antibody binding reaction in membrane was detected by the enhanced chemiluminescence assays.
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5

Inflammasome Activation Pathways

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Pharmacological reagents were obtained from the following manufacturers: Sigma (ML133, quinine, tetraethylammonium chloride (TEA), tetrapentylammonium (TPA), MCC950, lipopolysaccharide (LPS) from Escherichia coli O26:B6, and ATP), AdooQ (TRAM‐34 and PAP‐1), Alomone Labs (guangxitoxin‐1E), Tocris (dofetilide), Merck Millipore (Ac‐YVAD‐CMK), U.S Silica (Silica), Life Technologies (DNA [pEF/v5‐His A plasmid empty vector], Lipofectamine 3000), and Invivogen (ultrapure flagellin from Salmonella typhimurium and imiquimod). Specific antibodies were used targeting: mouse IL‐1β (AF‐401, R&D), caspase‐1 p10 (EPR16883, Abcam), gasdermin D (ab209845, Abcam), NLRP3 (G‐20B‐0014‐C100, Adipogen), and β‐actin (Sigma). All other materials/reagents were obtained from Sigma unless otherwise stated.
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6

Western Blot Analysis of Inflammasome Proteins

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For western blot, cells were lysed by cell lysis buffer (P0013; Beyotime) and cell culture supernatant (serum free) was precipitated by methanol and chloroform. The acquired protein samples were boiled for 10 min at 100 °C before gel electrophoresis. A 5200 Multi Chemiluminescence Imaging System (Tanon) was used to detect the protein bands on blots with Super ECL Detection Reagent (36208ES; Yeasen). The primary antibody used in western blot analysis were as follows: Anti-tubulin (11224-1-AP; proteintech); anti-caspase-11 (14340s; CST); anti-Caspase-1 (22915-1-AP; Proteintech); anti-GSDMD (ab209845; Abcam); anti-IL-1β (ab9722; Abcam).
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7

Western Blot Protein Analysis Protocol

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All proteins were extracted by RIPA buffer (Solarbio Life Science, Beijing, China) mixed with protease inhibitors on ice plates. Then, protein concentration was qualified by a BCA protein assay kit purchased from Solarbio Life Science. Next, equal amounts of protein were loaded onto 10% SDS-PAGE gels and transferred to nitrocellulose membranes (Millipore). The membranes were blocked with 5% BSA (Sigma-Aldrich) and incubated with primary antibodies at 4°C overnight. On the second day, the membranes were washed with 1x TBS solution and incubated with the secondary antibody conjugated with HRP at normal temperature for 1 hour. Finally, the results were determined using the ChemiDocTM Imaging System (Bio-Rad, Hercules, CA, USA). The following primary antibodies were used: FOXP2 (20529-1-AP, 1:1000, ProteinTech), PCNA (ab29, 1:1000, Abcam), cyclin D1 (ab40754, 1:5000, Abcam), caspase-1 (sc-392736, 1:1000, Santa Cruz), caspase-3 (sc-7272, 1:1000, Santa Cruz), caspase-9 (ab32539, 1:1000, Abcam), GSDMD (ab209845, 1:1000, Abcam), GAPDH (1:1000, TransGen Biotech, Beijing), Flag-tag (D6W5B, CST), HA-tag (C29F4, CST), and β-actin (1:1000, TransGen Biotech, Beijing). The secondary protein was purchased from TransGen Biotech (Beijing).
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8

Comprehensive Inflammasome Signaling Pathway Protocol

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Antibodies used targeted mouse IL-1β (AF-401-NA, R&D Systems), mouse gasdermin D (ab209845, Abcam), ASC (AL177, Adipogen), mouse IL-1α (AF-400-NA, R&D Systems), human calpain 1 (ab39170, Abcam), human calpain 2 (ab39165, Abcam), and β-actin-HRP (A3854, Sigma). Pharmacological agents used were punicalagin (Sigma), glycine (Sigma), NBC6 (synthesized in house (17 (link))), MCC950 (CP-456773, Sigma), Z-VAD-fluoromethyl ketone (Merck), calpain inhibitor III (Merck), nigericin (Sigma), adenosine triphosphate (Sigma), ionomycin (Sigma), monosodium urate crystals (InVivoGen), calcium pyrophosphate dihydrate crystals (InVivoGen), and IL-Ra (Kineret®, Amgen). All other materials were from Sigma-Aldrich unless specified.
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9

Sevoflurane Modulates Neuroinflammation

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Sevoflurane was provided by the Department of Anesthesiology at Shenzhen People’s Hospital (Shenzhen, China). Lipopolysaccharide (LPS; 124S032) was purchased from Solarbio (Beijing, China). VX-765 (HY13205) was purchased from Sigma-Aldrich (Darmstadt, Germany). Anti-GSDMD (ab209845), anti-NLRP1 (ab98181), anti-NLRP3 (ab270449), anti-Tau (phosphor T231; ab151559), anti-Tau (ab32057), anti-GAPDH (ab8245), anti-IL-18 (ab207323), anti-IL-1β (ab234437), anti-pro caspase-1 + p10 + p12 (ab179515), and anti-caspase-3 (ab179517) antibodies were purchased from Abcam (Cambridge, UK). Anti-D-PP2A (#3281733) antibodies were purchased from EMD Millipore (MA, Burlington, United States). Anti-ASC/TMS1 (#67824), anti-PP2A (#2259), anti-GSK 3β (#12456), anti-p-GSK 3β (#9323), anti-CaMKII-α (#50049), anti-p-CaMKII-α (#12716), and anti-PP2A C subunit (52F8; #2259) antibodies were purchased from Cell Signaling Technology (Beverly, MA, United States). Goat anti-rabbit (A0208) and goat anti-mouse (A0216) antibodies were purchased from Beyotime (Shanghai, China).
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10

Antibody-Based Apoptosis Signaling Assay

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Antibodies for GSDME (ab215191), GSDMD (ab209845) were purchased from Abcam (Cambridge, Cambridgeshire, Britain). Antibodies for caspase-1 (3866T), caspase-9 (9502T), caspase-3 (9668T), caspase-8 (9746T) and γH2AX (9718T) were purchased from Cell Signaling Technology (Danver, MA, USA), and GAPDH (60004-1-lg) was from Proteintech Group (Wuhan, Hubei, China). The secondary antibodies including HRP Goat Anti-Mouse IgG (H+L) (AS003), HRP Goat Anti-Rabbit IgG (H+L) (AS014) and FITC Goat Anti-Rabbit IgG (H+L) (AS011) were bought from Abclonal (Wuhan, Hubei, China).
Other reagents were purchased as follows: caspase-3 inhibitor (Z-DEVD-FMK) (HY-12466) and ROS scavenger N-acetyl cysteine (NAC) (HY-B0215) were from MedChemExpress (Monmouth Junction, NJ, USA); protease inhibitor cocktail tablets (BL612A) were from Biosharp (Beijing, China).
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