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Polyvinylidene difluoride membrane

Manufactured by GE Healthcare
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Polyvinylidene difluoride (PVDF) membranes are a type of laboratory equipment used in various analytical and separation techniques. PVDF membranes are known for their chemical and thermal resistance, making them suitable for a wide range of applications. They are commonly used in methods like Western blotting, protein and DNA transfer, and immunoassays.

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316 protocols using polyvinylidene difluoride membrane

1

Protein Expression Analysis in Wildtype and CB1 Knockout

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Total lysate of WT and CB1-/- SRN collected from caput and cauda and aliquots of beads removed during RIP experiments before RNA isolation, were separated by SDS-PAGE and transferred to polyvinylidene difluoride membrane (GE Healthcare, Milano, Italy) at 280 mA for 2.5 hours at 4°C. The filters were treated for 3 hours with blocking solution [5% nonfat milk, 0.25% Tween-20 in Tris-buffered saline (TBS, pH 7.6)] and then separately incubated ON, at 4°C in TBS-milk buffer (TBS pH 7.6, 3% nonfat milk) with different primary antibodies [QKI (PA5-87292), Invitrogen, Milano, Italy, diluted 1:500; Gelsolin (sc-514502), Santa Cruz Biotechnology, Heidelberg, Germany, diluted 1:500]. After washing in 0.25% Tween20-TBS, filters were incubated with 1:1000 horseradish peroxidase-conjugated rabbit IgG (Dako Corp., Milano, Italy) in TBS-milk buffer and then washed again. The immune complexes were detected using the enhanced chemiluminescence-western blotting detection system [Amersham ECL western Blotting Detection Reagent (RPN2106) GE Healthcare, Milano, Italy]. The specificity of the immunoreactions was routinely checked by omitting primary Ab (data not shown).
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2

Western Blot Analysis of Adipocyte Markers

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3T3-L1 cells were collected and suspended in a lysis buffer containing 62.5 mM Tris-HCl (pH 6.8), 2% SDS, 10% glycerol, 50 mM dithiothreitol, and protease inhibitor cocktail tablet (Roche Diagnostics, Mannheim, Germany). The total protein concentration of the lysates was determined by using a BCA Protein Assay Reagent (Pierce, Rockford, IL, USA). Proteins in the lysates were electrophoretically separated by 10% SDS polyacrylamide gel and then transferred to a polyvinylidene difluoride membrane (GE Healthcare Life Sciences, Piscataway, NJ, USA). The membranes were blocked in 5% BSA overnight at 4 °C and then incubated overnight at 4 °C with the following primary antibodies: PPARγ (1:1000), C/EBPα (1:1000), GLUT4 (1:1000), Na/K ATPase α1 (1:1000), and β-actin (1:1000). The membranes were incubated with horseradish peroxidase-conjugated secondary antibodies overnight at 4 °C. The bands were visualized with enhanced chemiluminescence (Amersham Pharmacia Biotech, Buckinghamshire, UK) and exposed to X-ray film (Eastman Kodak, Rochester, NY, USA).
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3

FUS Protein Expression in Metabolic Tissues

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Caput and/or cauda SPZ collected from CTRL, HFD and FS mice (n=6 animals for each experimental group) were used for total protein extraction. Samples were lysed in RIPA buffer [PBS, pH 7.4, 10 mM of dithiothreitol, 0.02% sodium azide, 0.1% SDS, 1% NP-40, and 0.5% sodium deoxycholate, protease inhibitors (10 μg/ml of leupeptin, aprotinin, pepstatin A, chymostatin, and 5 μg/ml of TPCK)] and sonicated three times for 30 sec bursts, each at 60 mW. Total lysates were separated by SDS-PAGE and transferred to polyvinylidene difluoride membrane (GE Healthcare, Milano, Italy) at 280 mA for 2.5 h at 4°C. The filters were treated for 3 h with blocking solution [5% nonfat milk, 0.25% Tween-20 in Tris-buffered saline (TBS, pH 7.6)] and then separately incubated with anti-FUS primary antibody (PA5-52610; Invitrogen, Milano, Italy) overnight at 4°C in TBS-milk buffer (TBS pH 7.6, 3% non-fat milk). After washing in 0.25% Tween20-TBS, filters were incubated with 1:1000 horseradish peroxidase-conjugated rabbit IgG (Dako Corp., Milano, Italy). The immune complexes were detected using the enhanced chemiluminescence-western blotting detection system [Amersham ECL western Blotting Detection Reagent (RPN2106) GE Healthcare, Milano, Italy]. The specificity of the immunoreactions was routinely checked by omitting primary antibody (data not shown).
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4

Protein Isolation and Immunoblotting Assay

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The total protein was isolated from liver tissues using RIPA buffer (Sigma-Aldrich, St. Louis, US). Ten micrograms of total protein was loaded per well and then separated on 12% sodium dodecyl sulfate-polyacrylamide gel. Then, the protein was transferred onto the polyvinylidene difluoride membrane (GE Healthcare, Buckinghamshire, United Kingdom). The membrane was blocked with 5% BSA in TBST (0.5% Tween 20) for 1 h at room temperature. The membrane was incubated at 4°C overnight with primary antibodies: rabbit anti-phospho-AKT (Ser473, 1 : 1000), rabbit anti-phospho-Stat3 (Tyr705, 1 : 2000), rabbit anti-phospho-NF-κB p65 (Ser536, 1 : 1000), rabbit anti-AKT (1 : 1000), rabbit anti-Stat3 (1 : 2000), anti-NF-κB p65 (1 : 1000), rabbit anti-caspase 3 (1 : 1000), and rabbit anti-GAPDH (1 : 20000, Sigma-Aldrich, St. Louis, USA). All antibodies besides rabbit anti-GAPDH were purchased from Cell Signaling Technology, Beverly, USA. The membrane was incubated for 1 h at room temperature with a goat polyclonal to rabbit IgG antibody (1 : 10000, Abcam) and developed with the SuperSignal West Femto Trial kit (Thermo, USA). The membrane was exposed to high-sensitivity films (GE Healthcare) for autoradiography.
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5

Western Blot Analysis of AR and p53

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The expression levels of AR and p53 were examined by Western blotting. Proteins were extracted and quantified using Nanodrop 1000 (Thermo Fisher Scientific). Equal amounts of proteins were separated in10% SDS-PAGE gel (Invitrogen) and blotted onto the polyvinylidene difluoride membrane (GE Healthcare Life Sciences). Membranes were probed with antibodies against the proteins [AR (Cell Signaling Technology, catalog no. 3202, RRID:AB_2060162) and p53 (Santa Cruz Biotechnology, catalog no. sc-126, RRID:AB_628082)] and β-actin (Sigma-Aldrich, catalog no. A3854, RRID:AB_262011) as control. Membranes were incubated with second antibodies, followed by detection of ECL reagent (GE Healthcare Life Sciences), and the Amersham Imager 600 (GE Healthcare Life Science).
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6

Protein Extraction and Western Blot Analysis

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The cells were cultivated in serum-free DMEM in six-well plates until they reached 80% confluency. The medium was removed, and the cells were washed twice with PBS. A lysis buffer (M-PER® Mammalian Protein Extraction Reagent; Pierce Biotechnology, Rockford, IL, USA) was then added to the cells, following which they were scraped from the plate and centrifuged at 14,000 × g at 4°C for 10 min. The supernatant was then heated for 5 min in Laemmli sample buffer containing dithiothreitol (50 mM). Equivalent quantities of the lysed and heated proteins (30 μg/well) were electrophoresed on polyacrylamide gels (10%; Bio-Rad, Shanghai, P.R. China), following which the isolated proteins were transferred to a polyvinylidene difluoride membrane (GE Healthcare, Pittsburgh, PA, USA). The membrane was blocked with skimmed milk (5%; Bio-Rad) for 1 h at room temperature, and then incubated overnight with the primary antibody at 4°C. Determination of concentrations was conducted as instructed. The membrane was then incubated with the horseradish peroxidase-conjugated secondary antibody for 1 h at room temperature, and the proteins were finally examined using enhanced chemiluminescence kits (GE Healthcare).
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7

Lens Protein Extraction and Analysis

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To extract total protein from lenses, lenses were homogenized in lysis buffer composed of protease and phosphatase inhibitor cocktails for 1 h at 4 °C. The extracted protein concentration was quantified by BCA protein assay (Pierce), subjected to 7.5–10% SDS-Tris glycine gel electrophoresis, transferred to polyvinylidene difluoride membrane (GE Healthcare, Buckinghamshire, UK). The membrane was incubated in 5% non-fat skim milk in with Tween-20 buffer (10 mmol/L Tris, 150 mmol/L NaCl, and 0.1% Tween-20, pH 7.4) for 1 h. Primary antibodies: AKR1B1, MMP9, vimentin (GTX113381, GTX100458 and GTX100619, respectively, Genetex, Irvine, CA, USA), N- and E-cadherin (610920 and 610182, respectively, BD Biosciences, Franklin Lakes, NJ, USA), Phosph-AMPK α1,2T172 (44-1150G, Thermo Fisher Scientific, Eugene, OR, USA), and SOD2 (acetyl K68) (ab137037, Abcam, Eugene, OR, USA) were diluted in PBST at 1:2000 dilutions and incubated at 4 °C overnight. Peroxidase-conjugated anti-mouse or anti-rabbit secondary antibodies (1:10,000) were used. The result was visualized using ECL-Plus detection kit (GE Healthcare) and exposed to film. The developed films were scanned (photo scanner 4490, Epson, Long Beach, CA, USA), analyzed using NIH image densitometry analysis software (National Institutes of Health, Bethesda, MD, USA).
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8

Western Blot Analysis of Cell Signaling

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Whole cell extracts were lysed in cell lysis buffer (Biosesang, Inc., Seongnam, Korea). Equal quantities of protein (30 µg) were separated on 8–12% SDS-PAGE gels and were subsequently transferred onto a polyvinylidene difluoride membrane (GE Healthcare Life Sciences, Freiburg im Breisgau, Germany). After blocking the membranes with 1% bovine serum albumin and 2% skimmed milk for 1 h, the membranes were incubated at 4°C overnight with the appropriate primary antibody, and were washed three times in phosphate buffered saline with 0.01% Tween-20. The membranes were incubated at room temperature for 1 h with horseradish peroxidase-conjugated secondary antibodies. In order to visualize the protein bands, the membranes were treated with enhanced chemiluminescence kit solution (DoGen) and exposed to X-ray film (AGFA Healthcare, Mortsel, Belgium). Anti-PARP, caspase-3, caspase-9, cyclin-dependent kinase (CDK)4, phosphorylated (p-)p53 and p-murine double minute 2 (MDM2) antibodies were obtained from Cell Signaling Technology, Inc. (Danvers, MA, USA). Anti-CDK1, CDK2, cyclin E, cyclin A, cyclin B, p21, p53 and Bcl-2 antibodies were purchased from Santa Cruz Biotechnology, Inc. Anti-cyclin D and Bcl-xL antibodies were obtained from BD Biosciences (San Jose, CA, USA). The anti-tubulin antibody was obtained from Sigma-Aldrich, Inc. (St. Louis, MO, USA).
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9

Western blot analysis of signaling proteins

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The phosphorylation of ERK1/2 and JNK, and the expression of activated caspase‐3, PARP‐1, SIRT1, RANKL, sclerostin and Ac‐p53 were performed by western blot in MLO‐Y4 cells seeded in 60 mm tissue culture dish treated as reported above. Cells were lysed for 30 min at 4 °C in ice‐cold RIPA buffer and centrifuged at 20 000 g for 10 min. Equal amounts of total proteins (40–60 μg) were loaded in each line and were subjected to SDS/PAGE on 10% gel and electrotransferred to poly(vinylidene difluoride) membrane (GE Healthcare). Membranes were probed with specific primary antibody anti‐caspase‐3 or anti‐phospho‐ERK1/2 or anti‐phospho‐JNK or anti‐PARP‐1 (Cell Signalling Technology, Danvers, MA, USA) or anti‐SIRT1 or anti‐RANKL or anti‐sclerostin (Santa Cruz Biotechnology, Inc., Dallas, TX, USA), or anti‐Ac‐p53 (Thermo Fisher Scientific). Subsequently, after stripping the membranes were reprobed with anti‐ERK1/2 or anti‐JNK or anti‐β‐actin for normalization of densitometric values. Secondary antibodies conjugated to horseradish peroxidase were used to detect antigen–antibody complexes using a chemiluminescence reagent kit (Clarity Western ECL Substrate, Bio‐Rad, Hercules, CA, USA). imagej software (National Institutes of Health, Bethesda, MD, USA) was used to perform quantitative analyses, and the values of the bands were expressed as fold‐increase relative to control values.
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10

Western Blot Protein Detection

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Proteins were transferred from the gel to a polyvinylidene difluoride membrane (GE Healthcare) which was blocked with 5% milk powder in TBS-T (Sigma-Aldrich) for 60 min. The membrane was incubated with a primary antibody overnight, followed by incubation with the peroxidase conjugated secondary antibody for 60 min. Blots were visualized by chemiluminescence (SuperSignal West Dura Chemiluminescent Substrate, Pierce) and documented using the ChemiDoc system (Bio-Rad).
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