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4 6 diamidine 2 phenylindole dihydrochloride dapi

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4',6-diamidine-2'-phenylindole dihydrochloride (DAPI) is a fluorescent dye used for nucleic acid staining. It selectively binds to DNA and emits blue fluorescence when excited by ultraviolet (UV) or violet light.

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27 protocols using 4 6 diamidine 2 phenylindole dihydrochloride dapi

1

Immunofluorescence Microscopy of Organelles

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Cells were fixed with 4% paraformaldehyde in phosphate buffered saline (PBS) and then permeabilized with 0.1% Triton X-100 in PBS. After blocking (1% BSA; 0.03% Triton X-100 in PBS) monoclonal rabbit α-V5 (Sigma-Aldrich), and monoclonal mouse α-mtHsp70 (kindly provided by Alena Zíková) was used followed by α-rabbit Alexa Fluor 488 and α-mouse Alexa Fluor 555 staining (Life Technologies). DNA was stained with ProLongTMGold antifade reagent with 4',6-diamidine-2'-phenylindole dihydrochloride (DAPI) (Molecular Probes). The immunofluorescence assay was performed using a Zeiss microscope Axioplan 2 equipped with an Olympus DP73 digital camera.
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2

IFNε Expression Detection in Uteri

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Uteri from IL-15-CFP reporter mice were fixed in 10% neutral buffered formalin and embedded in paraffin. Four µm sections were cut and deparaffinized routinely. Heat-induced epitope retrieval (HIER) was performed in citrate buffer (10 mM trisodium citrate, pH 6.0) under pressure using a Biocare decloaking chamber (Biocare; 5 min, 110 °C). To detect IFNε protein, sections were labeled with mouse anti-IFNε (3 μg/mL; generated in-house (Fung et al, 2013 (link))), biotinylated anti-mouse IgG secondary antibody (Table EV1), followed by AF594-labeled Streptavidin (Invitrogen). Background staining was prevented using goat serum (Vector Laboratories). CFP expression was detected with AF488-labeled anti-GFP. Slides were counterstained with 4’,6-diamidine-2’-phenylindole dihydrochloride (DAPI; Molecular Probes) and coverslipped with Fluorescence mounting medium (Agilent). Slides were scanned at 20x magnification using a VS120 Virtual Slide Microscope (Olympus) and analyzed with OlyVIA software (Olympus).
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3

Tracking iPSC-MSC-sEV Uptake by Macrophages

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For in vitro uptake experiments, human macrophages were plated onto round glass coverslips in 24-well plate at 3 × 105 cells/well and incubated in 0.5 mL RPMI 1640 medium supplemented with 10% FBS and penicillin/streptomycin for 24 h. Then 5 × 108 mCherry-labeled iPSC-MSC-sEV were added to each well, and incubated with macrophages for indicated time points. Then macrophages on the coverslips were further stained with 4′,6-Diamidine-2′-phenylindole dihydrochloride (DAPI) (Molecular Probes, Eugene, OR, USA) and photographed using laser scanning confocal microscope (LSM 780; Zeiss, Jena, Germany).
For in vivo uptake experiments, the mice were administered with 1.5 × 1010 mCherry-labeled iPSC-MSC-sEV and sacrificed at indicated time points. Total lung cells were isolated and mean fluorescence index (MFI) of mCherry in macrophages were analyzed by means of flow cytometry.
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4

Immunohistochemical Detection of IFNε

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HIER was done using a Biocare decloaking chamber in citrate buffer (10 mmol/L trisodium citrate, pH 6.0) at 110°C for 5 minutes under pressure. To detect IFNε protein expression, mouse anti-IFNε (Clone HE70; S. S. Lim, manuscript in preparation) was used at a concentration of 3 μg/mL. Background staining was prevented by using goat serum (Vector Laboratories). Biotinylated anti-mouse immunoglobulin G (Vector Laboratories) was used as secondary antibody, followed by incubation with Alexa Fluor 488-labelled streptavidin (Invitrogen).
Slides were counterstained with 4′,6-diamidine-2′-phenylindole dihydrochloride (DAPI; Molecular Probes) and coverslipped with fluorescence mounting medium (Agilent).
Slides were scanned at 20× and 40× magnification using an Aperio Scanscope FL (Leica Biosystems) and analyzed with Aperio ImageScope software (Leica Biosystems).
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5

Intracellular Actin-Tail Formation by B. pseudomallei

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One day before infection, SH-SY5Y cells were plated on 22 × 22 mm square glass coverslips (Menzel-Glaser) in a 6-well plate (Costar, Corning, NY, USA) and incubated at 37 °C in a humidified 5% CO2 atmosphere. The overnight B. pseudomallei culture was subjected to infection by the SH-SY5Y cells at an MOI of 20. After killing the extracellular bacteria as previously described, actin tail formation was observed at 6 h post-infection. The infected cells were washed with PBS twice and then fixed with 4% (v/v) paraformaldehyde in PBS at room temperature overnight. The fixed cells were washed with PBS before permeabilization with 0.5% (v/v) Triton X-100 in PBS. After 30 min of incubation, 1% (w/v) bovine serum albumin (Sigma-Aldrich, St. Louis, MO, USA) in PBS was added and incubated for 30 min at room temperature. Subsequently, bacteria were stained using a mouse monoclonal anti-B. pseudomallei lipopolysaccharide antibody (Camlab, Cambridge, United Kingdom) followed by Alexa Fluor488-conjugated anti-mouse Immunoglobulin (Molecular Probes, Eugene, OR, USA). Actin filaments and DNA were stained using Alexa Fluor555-conjugated phalloidin (Molecular Probes) and 4′,6′diamidine-2′-phenylindole dihydrochloride (DAPI; Molecular Probes), respectively. Actin-tail formation was examined in 100 fields by confocal laser scanning microscopy (LSM 700; Carl Zeiss, Jena, Germany).
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6

Immune Stimulant Protocol Reagents

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l-Ala-γ-D-Glu-meso-diaminopimelic acid (TriDAP), muramyl dipeptide (MDP) and polyinosinic-polycytidylic acid (polyI:C) were purchased from Invivogen (San Diego, CA, USA). Macrophage-activating lipopeptide of 2 kDa (MALP-2) was synthesized and purified as described before [19 (link)]. Lipopolysaccharide (LPS) and isolectin B4 were from Sigma-Aldrich (Seelze, Germany), 4',6-Diamidine-2'-phenylindole dihydrochloride (DAPI) from Life Technologies (Darmstadt, Germany), 4% formalin (Roti®-Histofix) from Carl Roth (Karlsruhe, Germany). Rat anti-mouse CD31 and CD144 antibodies were obtained from BD Biosciences (San Jose, CA), Dynabeads sheep anti-rat IgG was purchased from Invitrogen (Carlsbad, CA, USA). VectaMount permanent mounting medium was used from Vector Laboratories (Burlingame, CA, USA).
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7

Immunofluorescent Staining of Collagen X

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Col X expression levels of C5.18 cells induced by IL-1β were determined using an immunofluorescent stain. After induction by IL-1β, the cells were placed in 4% paraformaldehyde for 10 minutes and washed in phosphate-buffered saline twice. Immunofluorescent staining was performed using a standard protocol. We incubated the cells with primary antibodies to rabbit collagen X (1:100, ab58632; Abcam) overnight at 4°C. Secondary antibodies conjugated with fluorescence goat antirabbit CY3 (1:800; Life Technologies, Warrington, UK) were added, and cells were incubated at room temperature for 1 hour while avoiding light, followed by counterstaining of cell nuclei with 4′,6-diamidine-2′-phenylindole dihydrochloride (DAPI) (Life Technologies, Warrington, UK). Photographs of the selected areas were taken by a microscope (Leica DMRB; Leica Cambridge Ltd, Cambridge, UK).
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8

Immunofluorescence Analysis of p-ELK1 in HeLa and SiHa Cells

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HeLa and SiHa cells (10,000 cells/mL), transfected with shTCONS_00026907 (shRNA and NC), were cultured on a coverslip. Briefly, the treated HeLa and SiHa cells were fixed with 3.7% paraformaldehyde in PBS for 20 min at room temperature. 0.2% Triton X‐100 solutions in PBS were used to permeabilize cells for 10 min at room temperature. Then, cells were incubated with the primary antibody of p‐ELK1 (1:100, Santa Cruz Biotechnology, USA) overnight at 4°C. After being washed, the fluorescence‐conjugated secondary antibody (goat‐anti‐rabbit‐Alexa 594‐conjugated antibodies, Life Technologies, USA) was used to incubate the treated coverslips for 1 h at room temperature. The treated coverslips were then incubated with 4′,6‐Diamidine‐2′‐phenylindole dihydrochloride (DAPI; Life Technologies, USA) for 10 min at room temperature. The images were obtained using a fluorescence microscope (Olympus, USA).
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9

Visualization of Cardiomyocyte Cytoskeleton and NFAT Translocation

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NRCs were cultured on coverslips coated with laminin (BD Sciences). After adenoviral infection or siRNA transfection, serum starvation and stimulation with Ang II/PE, cells were fixed in 4% paraformaldehyde at RT, washed with PBS, permeabilized with 0.5% Triton X-100, and blocked with a blocking solution (1% BSA, 0.1% cold water fish skin gelatin, 1% Tween-20 in PBS) for 1 h. Cells were then labeled using an antibody against α-actinin (Sigma-Aldrich) and a secondary antibody (AlexaFluor 568, Life Technologies) to visualize cardiomyocytes. 4′, 6-diamidine-2′-phenylindole dihydrochloride (DAPI) was used to visualize the nucleus (300 nM, 5 min, RT; Life Technologies). For detecting the translocation of NFAT, cardiomyocytes infected with NFATc1-GFP, were stimulated with AngII/PE (1 μM/50 μM) for 15 min and processed for further fluorescence recordings.
Fluorescence microscopy was performed using a Zeiss Axiovert 135 microscope with a 63x oil immersion objective (Zeiss Plan Neofluar). Quantification of NFATc1 nuclear translocation was determined by measuring the mean grey value of NFATc1-GFP in the nucleus and in the cytoplasm using Image J software. The quotient of nucleus to cytoplasm was used to compare the localization of NFATc1. Cell areas were determined using Image J software.
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10

Podocyte Immunofluorescence Characterization

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Immunofluorescence experiments were performed with Phalloidin-iFluor 555 (Abcam, Cambridge, UK) and 4',6-diamidine-2'-phenylindole dihydrochloride (DAPI; Life Technologies, Carlsbad, USA) to visualise cell cytoskeleton and nucleus, respectively. Mouse anti-ZO-1 antibody (clone 1) and mouse anti-nephrin antibody (clone 174CT2.1.1), used to visualise cell-cell contact complexes, were purchased from BD Bioscience (Le Pont de Claix, France) and from Sigma-Aldrich, respectively. Anti-mouse Alexa Fluor 488 conjugated secondary antibodies, used to detect primary antibodies, were obtained from Life Technologies.
Differentiated podocytes grown on glass coverslips were fixed with paraformaldehyde (3.7% in PBS) and permeabilised with Triton X-100 (0.5%). Then the cells were incubated with primary antibodies directed against nephrin (1/50) or ZO-1 (1/50) for 1 h at room temperature, washed and incubated with the anti-mouse Alexa Fluor 488 conjugated secondary antibodies (1/200) in the presence of Phalloidin-iFluor 555 and DAPI to visualise F-actin and cell nucleus, respectively. The images were acquired using an epifluorescence inverted microscope (IX81, Olympus, Tokyo, Japan) equipped with a cell imaging software (Soft Imaging System GmbH, Munster, Germany).
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