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Cyclin b1

Manufactured by Santa Cruz Biotechnology
Sourced in United States, United Kingdom

Cyclin B1 is a protein involved in the regulation of the cell cycle. It plays a critical role in the transition from the G2 phase to the M phase of the cell cycle. Cyclin B1 forms a complex with the enzyme cyclin-dependent kinase 1 (CDK1), which is necessary for the initiation of mitosis.

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162 protocols using cyclin b1

1

Western Blot Analysis of RA-FLS Proteins

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A RIPA (radioimmunoprecipitation) lysis buffer from Beyotime (Shanghai, China) was used to isolate total proteins from cultured RA-FLSs. The determination of the concentration of total protein was carried out employing a BCA protein assay kit procured from Pierce (Rockford, IL, U.S.A.). Proteins in equal, and measured amounts were electrophoretically separated on SDS-PAGE (10%) and transferred to PVDF membranes (polyvinylidene fluoride; Millipore, U.S.A.). After the blocking procedure with nonfat milk (5%), antibodies against TLR4 (1:2000), CyclinA1(1:1000), CyclinB1(1:1000), CyclinD2(1:2000), and GAPDH (1:5000) (all from Santa Cruz, U.S.A.) were added to the membrane, followed by secondary antibodies (1:6000, Santa Cruz) conjugated with horseradish peroxidase. The internal loading control was GAPDH. The chemiluminescent substrate kit from Millipore Company (Bedford, MA, U.S.A.) was used to observe protein bands as per instructions of the manufacturer. Gray analysis was performed using software Gel-Pro Analyzer 4 (United States Biochemical, Cleveland, OH, U.S.A.).
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2

Isolation and Identification of FC from Ferula assafoetida

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FC (Figure 1A) was isolated and identified from Ferula assafoetida as previously described [12 (link)]. 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT), Bcl-2, and β-actin were purchased from Sigma-Aldrich (Sigma-Aldrich, St. Louis, MO, USA). Also, specific antibodies for Cyclin D1, Cyclin E, Cyclin B1 were bought from Santa Cruz Biotechnology (Santa Cruz Biotechnology, Dallas, TX, USA). PARP, HDAC1, and HDAC2 were purchased from Cell Signaling (Cell signaling Technology, Danvers, MA, USA) for Western blot analysis.
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3

Antibodies Used in Cell Studies

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Antibodies used in this study include α-tubulin (immunofluorescent staining: AC007, ABclonal; Western blot: AC012, ABclonal), DDX21 (sc-376953, Santa Cruz Biotechnology), β-actin (AC026, ABclonal), Fibrillarin (A0850, ABclonal), GFP (HT801, TransGen Biotech), Cyclin B1 (sc-245, Santa Cruz Biotechnology), NOP58 (A4749, ABclonal) and Flag (Western blot: HT201, TransGen Biotech; immunofluorescent staining: F3165, Sigma-Aldrich). Thymidine (T1895), actinomycin d (SBR00013) and nocodazole (N219) were purchased from Sigma-Aldrich.
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4

DATS Inhibits HNSCC Cell Growth

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Cell culture essentials, including DMEM (Dulbecco’s Modified Eagle Medium), sodium pyruvate, non-essential amino acids, fetal bovine serum (FBS), and penicillin/streptomycin antibiotic mixture, were obtained from GIBCO (Grand Island, NY, USA). Diallyl trisulfide (DATS, purity > 98%) was procured from LKT Laboratories (St. Paul, MN, USA), and RNase A was sourced from Promega (Madison, WI, USA). Cyclin B1, Cdk1, pERK1/2, ERK1 antibodies were purchased from Santa Cruz Biotechnology (Santa Cruz, CA, USA); the anti-beta actin antibody was purchased from Sigma (St. Louis, MO, USA); and the antibody against cleaved poly-(ADP-ribose)-polymerase (c-PARP), cleaved caspase-3, pAkt (Ser 473), Akt, γH2AX (Ser 139), were purchased from Cell Signaling Technology (Danvers, MA, USA). UMSCC-22A, UMSCC-22B, and Cal33 cells were a generous gift from Prof. Daniel E. Johnson (University of California, San Francisco, CA, USA). HNSCC cells were grown in DMEM and supplemented with 10% FBS, 100 µg/mL streptomycin, and 100 units/mL penicillin under standard culture conditions. Stock solution of DATS was prepared in dimethyl sulfoxide (DMSO).
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5

Antibody Characterization for Cell Biology

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The following antibodies were used for immunofluorescence and immunoblot: Anti-SET/TAF1 (KM1725, KM1712, and KM1720; Nagata et al., 1998 (link)), Anti-hSgo1 (Kitajima et al., 2005 (link)), hSgo2 (Kitajima et al., 2006 (link)), HA (sc-7329 and sc-805 from Santa Cruz Biotechnology; 3F10 from Roche Diagnostics), Aurora B (611082; Becton Dickinson), pAurora A (T288)/B (T232; 2914S; Cell Signaling), borealin (M147-3; MBL), PP2A-A (sc-6112; Santa Cruz Biotechnology), Hec1 (GTX70268; Gene Tex) and Hec1 phospho Ser 55 (GTX70017; Gene Tex), cyclin B1 (sc-245; Santa Cruz Biotechnology), phospho-histone H3 Ser 10 (06–570; Millipore), β-tubulin (T4026; Sigma), α-tubulin (T9026; Sigma), His (M136-3; MBL), and Cenp-C (PD030; MBL) antibodies. Anti-centromere antibody (ACA) was provided by Y. Takasaki (Juntendo University, Tokyo, Japan). For immunofluorescence, secondary antibodies (Invitrogen Alexa Fluor) were used at 1:400. For immunoblotting, secondary antibodies (Santa Cruz Biotechnology or Wako) were used at 1:2,000.
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6

Protein Isolation and Immunoblotting in Mouse and Human Livers

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Total protein was isolated from mouse and human livers, as described.17, 18 Membranes were probed with antibodies to β‐actin (#A5441; MilliporeSigma), caspase 3 (#9665; Cell Signaling, Beverly, MA), caspase 7 (#9492; Cell Signaling), cyclin A (#sc‐596; Santa Cruz Biotechnology, Santa Cruz, CA), cyclin B1 (#sc‐595; Santa Cruz Biotechnology), cyclin D1 (#MA1‐24750; Thermo Fisher Scientific), cyclin D2 (#sc‐593; Santa Cruz Biotechnology), cyclin D3 (#sc‐182; Santa Cruz Biotechnology), cyclin‐dependent kinase (CDK) 2 (#sc‐163; Santa Cruz Biotechnology), CDK4 (#sc‐260; Santa Cruz Biotechnology), E2F2 (#sc‐633; Santa Cruz Biotechnology), Fos‐related antigen 1 (#sc‐183; Santa Cruz Biotechnology), total STMN1 (#3352; Cell Signaling), phosphorylated (phospho)‐Serine (Ser)‐16 STMN1 (#3353; Cell Signaling), phospho‐Ser‐38 STMN1 (#3426; Cell Signaling), and tubulin (#9411; Cell Signaling).
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7

Investigating KLF14 and Plk4 in Cell Lines

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HeLa, U2OS, 293T, H1299, HCT116, KLF14-WT and -KO MEF cells were maintained in DMEM with 10% fetal bovine serum. KLF2-10, KLF14-15 and KLF14 deletion mutants and Plk4 coding sequences were cloned into pCDNA 3.0 vector or pLVX-IRES (lentiviral expression vector) by standard cloning methods. The pLKO.1-shRNAs targeting KLF14 and Plk4 double-stranded oligo nucleotides are 5′- CCGGTCATCCAGATATGATCGAGTACTCGAGTACTCGATCATATCTGGATGATTTTTG -3′ (KLF14-Si-1), 5′- CCGGGCTGCACCAAAGCCTATTACACTCGAGTGTAATAGG CTTTGGTGCAGCTTTTTG -3′ (KLF14-Si-2), 5′- CCGGGACCTTATTCACCAGTTACTTCT CGAGAAGTAACTGGTGAATAAGGTCTTTTTG -3′ (human Plk4-Si) and 5′- CCGGCTACT CGGTAAAGGATCATTTCTCGAGAAATGATCCTTTACCGAGTAGTTTTTG -3′ (mouse Plk4-Si), respectively (target sequence underlined). Ataxia telangiectasia mutated inhibitor (caffeine), caspase inhibitor (Z-VAD-Fmk) and DNA damage reagent (MNNG) were obtained from Sigma. Antibodies used were KLF14 (SAB1304202, Sigma), Plk4 (12952-1-AP, Proteintech), cyclin B1 (Santa Cruz, sc-752), activated-caspase-3 (BS7004, Bioworld Technology), p-Histone H3 (BS4094, Bioworld Technology), p-Chk2 (BS4043, Bioworld Technology), Poly (ADP-ribose) polymerase (13371-1-AP, Proteintech), Chk2 (1C12, CST) and anti-γH2AX (ab26350, Abcam). Uncropped scans of typical blots using some of the antibodies are shown in Supplementary Fig. 6.
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8

Imatinib Apoptosis Signaling Pathway Analysis

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Imatinib was provided by Novartis Pharma AG (Basel, Switzerland). Antibodies for Western blotting, including caspase-9, caspase-3, cleaved caspase-3, PARP, phospho-c-Abl, phospho-Elk-1, phospho-cyclin-dependent kinase 1 (Cdk1) (Thr161), phospho-Cdk1 (Tyr15), phospho-ERK1/2, ERK1/2, phospho-Akt, Akt, phospho-STAT3, STAT3, Bcl-2, and Bcl-xL, were purchased from Cell Signaling Technology (Danvers, MA, USA). Antibodies specific for c-Abl, multidrug resistance 1 (MDR1), α-tubulin, cyclin B1, Cdk1, Mcl-1, Bax, cytochrome c, and β-actin were purchased from Santa Cruz Biotechnology (Santa Cruz, CA, USA). An antiphosphospecific MPM2 monoclonal antibody was purchased from Upstate Biotechnology (Lake Placid, NY, USA).
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9

Protein Expression Analysis by Western Blot

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Western blot analysis was performed to determine the expression levels of various proteins in cells. Cells were treated with RY-2f or DMSO at different concentrations for 24 h. Cells were harvested, washed with cold 1 × PBS, and lysed with RIPA lysis buffer (Beyotime) for 30 min on ice, then centrifuged at 12,000 g for 15 min at 4°C. The total protein concentration was determined by BCA protein assay kit (Beyotime). Equal amounts (30 μg per load) of protein samples were subjected to SDS-PAGE electrophoresis and transferred on to polyvinylidene fluoride (PVDF) membranes (Millipore). The blots were blocked in 10% non-fat milk, and incubated with primary antibodies, followed by incubation with secondary antibodies conjugated with horseradish peroxidase (HRP). The protein bands were developed with the chemiluminescent reagents (Millipore). Antibodies to p21, Bcl-2, Bad, Bax, cyclin A, cyclin B1, CDK2, pAKT(Ser437), AKT, PI3K (p110 α), mTOR, PTEN were from Santa Cruz Biotechnology. The Antibody to cleaved-PARP-1 was purchased from Cell Signaling Technology. The antibody to β-Actin was purchased from Sigma-Aldrich.
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10

Evaluating Apoptotic and Cell Cycle Markers

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Cells were treated with DMSO, TA, VCR or combination for 24 and 48 h. Total cellular protein extracts and western blotting was then done using the previously described method (Abdelrahim et al., 2006 (link)). Proteins of interest were probed by specific primary antibodies of apoptotic markers, cleaved poly-ADP-ribose polymerase (c-PARP, Cell Signaling Technology, Danvers, MA) and survivin (R&D Systems, Minneapolis, MN), and cell cycle markers cyclin A, cyclin D3 (Cell Signaling Technology), cyclin B1 and cyclin dependent kinases 4/6 (CDK4/6, Santa Cruz Biotechnology, Santa Cruz, CA). The expression of β-actin (Sigma) was used as a loading control.
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