The largest database of trusted experimental protocols

16 protocols using cox 1

1

Western Blot and qRT-PCR Analysis of Tumor Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
Proteins within tumour tissues and HUVEC cells were extracted using a Boster Kit (Bosterbio, CA, USA) according to the manufacturer’s instructions. Western blotting was performed as previously described [20 (link)]. The antibody, which was raised against the Cyp2c44’s IGRHQPPSMKDKMKC peptide (GenScript), was generated according to previous studies [13 (link), 16 (link)]. Other antibodies used in this study are as follows: Glyceraldehyde 3-phosphate dehydrogenase (GAPDH) (Bosterbio), β-actin (Bosterbio), Cyp2c9 (Abcam, Cambridge, UK), COX1 (Santa Cruz, CA, USA), COX2 (Santa Cruz), Phosphorylated extracellular signal-regulated kinase 1/2 (p-ERK1/2) (Santa Cruz), ERK1/2 (Santa Cruz), P-AKT (Abcam), AKT (Abcam), and CD31 (Abcam).
For qRT-PCR, RNA from tumours was extracted using TRIzol (Invitrogen, Carlsbad, CA, USA) according to the manufacturer’s instructions and reverse-transcribed using the M-MLV First-Strand cDNA Synthesis Kit (Invitrogen) [15 (link)]. The mRNA levels of target genes were quantified by qRT-PCR using Power SYBR Green PCR Master Mix (Invitrogen) with the primers listed in Additional file 1: Table S1. GAPDH served as an internal control and the results were analysed using the 2-ΔΔCt method.
+ Open protocol
+ Expand
2

Aortic Protein Expression Analysis in Marfan Mice

Check if the same lab product or an alternative is used in the 5 most similar protocols
Ascending aortic medial tissue from 6-mo-old wild-type (male n = 6; female n = 6) and Marfan (male n = 6; female n = 6) mice was homogenized using a bullet blender, ø 0.9–2 and 3 mm stainless steel beads (Next Advance, NY, USA) in 300 μl radioimmunoprecipitation assay buffer (RIPA, 10 mM Tris-HCl pH 7.5, 1 mM EDTA pH 7.5, 0.5 mM EGTA, 1% Triton X-100, 0.1% sodium desoxycholate, 0.1% SDS, 140 mM NaCl) and protease inhibitors. Protein concentrations were assessed using a colorimetric assay for protein concentration (Biorad, CA, USA). Twenty micrograms of protein per sample were analyzed by 10% (v/v) SDS-PAGE and transferred to nitrocellulose membranes. Primary antibodies to COX-1 (Santa Cruz, CA, USA), COX-2, eNOS, (p)eNOS (BD Transduction Laboratories, CA, USA), iNOS (Thermo Fisher, MA, USA) and actin (Sigma Aldrich, MO, USA) were incubated overnight in TBS 1% BSA. Protein bands were revealed using secondary IgG HRP conjugates (Promega, WI, USA) and Luminol Reagent together with Hyperfilm (Amersham Pharmacia Biotech, Uppsala, Sweden). Band intensities were measured by densitometry scanning using ImageJ software (National Institute of Health, Bethesda, MD, USA). Band intensities were relativized against actin as a loading control and the values of all groups were normalized for WT male average values.
+ Open protocol
+ Expand
3

Antibody Validation for Neuroinflammation Research

Check if the same lab product or an alternative is used in the 5 most similar protocols
We used the following antibodies: anti-Ionized calcium binding adapter molecule 1 (Iba-1, Western blot (WB); 1: 1000, Immunohistochemistry (IHC); 1:500, 019-19741, Wako, Osaka, Japan), anti-cyclooxygenase-1 (COX-1, WB; 1: 200, sc-19998, Santa Cruz Biotechnology, CA), anti-COX-2 (WB; 1: 100, sc-376861, Santa Cruz Biotechnology, CA), anti-L-PGDS (WB; 1: 500, PA1-46023, Thermo Fisher Scientific, Tokyo, Japan), anti-H-PGDS (WB; 1: 1000, PA5-24347, Thermo Fisher Scientific, Tokyo, Japan), anti-doublecortin (DCX, WB; 1: 1000, IHC; 1: 2000, ab18723, Abcam, Cambridge, MA), anti-Ki67 (IHC; 1: 100, NB500-170, Novus Biologicals, Inc., Littleton, CO), anti-superoxide dismutase 2 (SOD2, WB; 1: 1000, 13194, Cell Signaling Technology, Beverly, MA), anti-14-3-3ς (WB; 1: 1000, 7413, Cell Signaling Technology, Beverly, MA), anti-synaptophysin (WB; 1: 20000, ab32127, Abcam, Cambridge, MA), anti-postsynaptic density protein 95 (PSD95, WB; 1: 250, 610495, BD Biosciences, San Diego, CA), anti-Nuclear factor erythroid 2-related factor 2 (Nrf2, WB; 1: 500, Proteintech, Chicago, MA), anti-α-tubulin (WB; 1: 4000, T5168, Sigma-Aldrich, Deisen-hofen, Germany), and anti-GAPDH (WB; 1: 1000, ABS16, Millipore, Billerica, MA).
+ Open protocol
+ Expand
4

Protein Expression Analysis in Gastric Tissue

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total protein was extracted from gastric tissues using lysis buffer (RIPA) and quantified using a BCA assay. Proteins (50 µg) were separated by 8–12% SDS-PAGE, transferred onto polyvinylidene difluoride membranes (EMD Millipore, Billerica, MA, USA), and blocked with 5% dried skimmed-milk in Tris-buffered saline and 0.1% Tween 20 (Sangon Biotech Co., Ltd., Shanghai, China) for 1 h at 37°C. Subsequently, membranes were incubated overnight at 4°C with TNF-α (1:500; sc-8301), tumor necrosis factor receptor 1 (TNFR1; 1:500; sc-7895), tumor necrosis factor-related apoptosis inducing ligand (TRAIL; 1:500; sc-7877), death receptor (DR)4 (1:500; sc-7863), DR5 (1:500; sc-166624), COX-2 (1:500; sc-7951), COX-1 (1:500; sc-7950), PGE2 (1:500; sc-20676) and GAPDH (1:500; sc-25778), all purchased from Santa Cruz Biotechnology, Inc. (Dallas, TX, USA). Following this, the membranes were individually incubated for 2 h at room temperature with Horseradish peroxidase conjugated goat anti-rabbit Immunoglobulin G (1:5,000, cat. no. sc-2004; Santa Cruz Biotechnology, Inc.). Protein bands were visualized using an enhanced chemiluminescence system (Beyotime Institute of Biotechnology) and imaged using Quantity One software version 4.62 (Bio-Rad Laboratories, Inc., Hercules, CA, USA).
+ Open protocol
+ Expand
5

Immunoblot Analysis of Hepatocyte Organelles

Check if the same lab product or an alternative is used in the 5 most similar protocols
Protein samples (35 μg) from each fraction were subjected to SDS-PAGE (n = 3) blotted and probed with antibodies directed against specific marker proteins: cox1 (Santa Cruz, SC-58347; Santa Cruz Biotechnology Inc., Heidelberg, Germany), actin (Santa Cruz, SC-1615), calnexin (Santa Cruz, SC-11397), 58 K Golgi protein (abcam, ab6284, Cambridge, UK)), SUR1 (Santa Cruz, SC-5789), SUR2A and SUR2B s (Santa Cruz, SC-32462 and SC-5793, respectively) and Kir6.2 (Santa Cruz, SC-11228; Santa Cruz Biotechnology Inc., Heidelberg, Germany). Expressions of the BKCa channel α-subunit in rat hepatocyte endoplasmic reticulum was determined using an antibody directed against BKCa channel α-subunit (rabbit polyclonal antibody, AB-104467, Abcam, Cambridge, UK). Secondary antibodies linked to horseradish peroxidase were obtained from GE-Biosciences. Blots were finally treated with ECL kit for chemiluminescence detection.
+ Open protocol
+ Expand
6

Protein Expression Analysis in Heart Tissue

Check if the same lab product or an alternative is used in the 5 most similar protocols
Heart tissue was homogenized in a RIPA lysis buffer (50 mM Tris-HCl pH 8, 150 mM NaCl, 1% NP40, 0.5% sodium deoxycholate, 0.1% SDS, supplemented with protease inhibitor cocktail tablets (Roche Basel, Switzerland)) at 4 °C. After centrifuging for 30 min at 14,000× g, the supernatants were stored at −80 °C. For Western blot analysis, samples were boiled for 5 min in Laemmli sample buffer (5% SDS, 10% glycerol, 25 mM Tris-HCl pH: 6.8, 10 mM DTT, 0.01% bromophenol blue), and equal amounts of protein (30 μg) were separated on 8-15% SDS-polyacrylamide electrophoresis gels (SDS-PAGE). The relative amounts of each protein were determined with the following polyclonal or monoclonal antibodies: COX-1 (sc-1752 Santa Cruz Biotechnology, Dallas, TX, USA), COX-2 (160112Cayman Chemical Ann Arbor, Michigan USA); mitofusin 2 (ab56889Abcam Cambridge, UK,); TOMM20 (Sigma, WH0009804M1 Merck Life Science S.L.U. Darmstadt, Germany); β-actin (Sigma, A2066 Merck Life Science S.L.U. Darmstadt, Germany). After incubation with the corresponding horseradish peroxidase conjugated secondary antibody, blots were developed by the ECL protocol (GE Healthcare, Chalfont St Giles, UK). Protein band densities were normalized to β-actin. Densitometric analysis was carried out with Image J software and expressed in arbitrary units.
+ Open protocol
+ Expand
7

Oxidative Stress Protein Profiling in HUVEC

Check if the same lab product or an alternative is used in the 5 most similar protocols
HUVEC were scraped on ice in a lysis buffer and centrifuged for 15 minutes at 13,000 rpm to recover the proteins. The lysis buffer used for protein extraction is made by mixing different compounds: 20mM Hepes, pH 7.4, 1% Triton X-100, 100mM NaCl, 50mM NaF, 10mM β-glycerophosphate, 1mM phenylmethylsulfonyl fluoride (PMSF), 1mM sodium orthovanadate, protease inhibitor cocktail (Roche Diagnostics, Basilea, Switzerland). Primary specific antibodies: PRX-SO3 (Abcam, ab16830), PRX6 (Abcam, ab59543), GPX1 (Abcam, ab22604), Catalase (Sigma-Aldrich, c0979), MnSOD (Abcam, ab13533), Cu/ZnSOD (Abcam, ab13498) and eNOS (Santa Cruz Biotechnology, sc-653), COX-1 (Santa Cruz Biotechnology, sc-19998), COX-2 (Santa Cruz Biotechnology, sc-19999), PGIS (Santa Cruz Biotechnology, sc-20933), TXAS (Santa Cruz Biotechnology, sc-79181), Caspase-3 (Cell Signaling, 9662), NLRP3 (Novus, NBP2-12446).2 Finally, β-actin (Sigma-Aldrich, a1978) (Sigma-Aldrich) as loading control.2 Detection was performed using peroxidase-linked secondary antibodies (anti-mouse (Sigma-Aldrich, NA931V), anti-goat (Santa Cruz Biotechnology sc2020), anti-rabbit (Sigma-Aldrich, NA934V).
Protein carbonyls were measured using the OxyBlot™ protein oxidation kit (Merck, Massachusetts, USA) following the manufacturer’s specifications.
+ Open protocol
+ Expand
8

Cannabinoid and Vascular Reactivity Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
N,N-Dimethylformamide (DMF) and Tween-80 (Sigma-Aldrich); (−)-cannabidiol (CBD; THC Pharm GmbH, Frankfurt, Germany), anandamide-d8 (AEA-d8); 2-arachidonoyl glycerol-d8 (2-AG-d8); OEA-d4 (Cayman Chemical Company, Ann Arbor, MI, USA); pentobarbitone sodium (Biowet, Puławy, Poland); and sodium chloride (NaCl) (Chempur, Piekary Śląskie, Poland). Acetylcholine chloride, phenylephrine sodium nitroprusside and L-NAME (Sigma, Munich, Germany) were dissolved in deionized water. Indomethacin (Sigma) was dissolved in 0.5 mol/L NaHCO3. A stock solution (10 µM) of U46619 (9,11-Methanoepoxy PGH2) (Tocris, Bristol, UK) was prepared in ethanol (0.1% v/v) and diluted with deionized water, which adjusted the final concentrations of ethanol to less than 0.01% v/v. The antibodies used in the Western blots and immunohistochemistry were purchased from Abcam (CB1, CB2, COX-1, COX-2 and eNOS), Santa-Cruz Biotechnology (TRPV1, COX-2, anti-rabbit IgG horseradish peroxidase-conjugated secondary antibody), Dako (vWF) and Bioss Antibodies (TRPV1). The reagents for routine histological H + E staining and secondary antibody En Vision + Kit HRP Rabbit were obtained from Dako Denmark A/S, and normal rabbit serum was obtained from Vector Laboratories.
+ Open protocol
+ Expand
9

Investigating Anti-Inflammatory Pathways

Check if the same lab product or an alternative is used in the 5 most similar protocols
The antibodies against total actin, COX-1, and COX-2 were obtained from Santa Cruz Biotechnology (Santa Cruz, CA, USA). Mouse monoclonal antibody for mPGES-1 and PGE2 enzyme immunoassay kit was obtained from Cayman Chemical (Ann Arbor, MI, USA). Rabbit polyclonal antibody to 15-PGDH was obtained from Novus Biologicals (Littleton, CO, USA). Aspirin, meloxicam, 3-[4,5-dimethylthiazol-2-yl]-2,5-diphenyl tetrazolium bromide (MTT), dimethyl sulfoxide (DMSO), tumor necrosis factor (TNF)-α, and pyrrolidine dithiocarbamate (PDTC) were obtained from Sigma/Aldrich (St. Louis, MO, USA). Mouse monoclonal antibody to nuclear factor kappa B (NF-κB), inhibitor of NF-κB (IκB) were obtained from Santa Cruz Biotechnology.
+ Open protocol
+ Expand
10

Immunohistochemistry Tissue Staining Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
Surgically discarded tissue was fixed in 10% zinc formalin, embedded in paraffin wax, cut into 4 μm sections, then rehydrated, followed by antigen retrieval and staining using a DAKO autostainer. Sections were incubated with secondary antibody or normal serum IgG as negative controls. The MCW/CHW Pathology Core facility was used for all IHC studies. Antibodies to both COX1 and COX2 (Santa Cruz Biotechnologies) were used.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!