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Application module

Manufactured by Leica
Sourced in Germany

The Leica Application module is a core laboratory equipment designed to streamline various analytical processes. It provides a versatile platform for seamless integration with Leica's suite of instruments, enabling efficient data management and workflow optimization.

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14 protocols using application module

1

Multimodal Neuroinflammation Quantification

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According to (Abbas et al. 2021 (link)), 6 non-overlapping fields in CA1 and cerebral cortex were chosen randomly in each sample and examined for detecting relative area percentage of immunohistochemical expression of GFAP; mean reactive microglial cells counts for CD163, CD86 and Iba-1 in immunohistochemically stained sections. Besides, the mean count of intact neurons in CA1 and cortex in toluidine blue stained tissue sections was performed. Also, the number of Ferric ion deposits was detected by Prussian blue stain in CA1 and cerebral cortex.Lastly, the optical density (OD) of CD163 expressed in neuron cells of CA1 and cortex was measured.
The Leica Application module linked to the imaging system (Leica Microsystems GmbH, Germany) was used to examine and obtain data.
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2

PCNA Immunostaining Morphometric Analysis

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Six random non-overlapping fields per sample were selected for each positive anti-PCNA section, and photomicrographs were captured at ×400 magnification.
Morphometric analysis was performed by calculating the mean area percentage (mean%) of the brown-colored positively immunostained PCNA in the lingual covering mucosa, as per [76 (link)]. This was done by a specialist blinded to the experimental groups using image analysis software (Image J, 1.41a, NIH, USA). All photomicrographs were taken with a Leica Application Module linked to Full HD microscopic imaging equipment (Leica Microsystems GmbH, Wetzlar, Germany).
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3

Histological Analysis of Hippocampus

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Brain specimens were fixed in neutral buffered formalin (10%) for 72 h. Then, they were treated with ethanol in serial grades, cleared in xylene, infiltrated, and finally embedded into Paraplast tissue embedding media (Leica biosystems, Wetzlar, Germany). Four micron thick serial coronal brain sections were cut, mounted on glass slides, and stained by hematoxylin and eosin (H&E) for microscopic examination of hippocampal subregions. In addition, Nissl staining analysis was performed by staining the coronal sections with toluidine blue (Culling 2013 ). Four random non-overlapping fields per section were analyzed for the quantification of intact neurons, showing intact subcellular details, in the CA3 region of the hippocampus. For histological analysis, all micrographs were taken with a full HD microscopic imaging system operated with Leica application module (Leica Microsystems GmBH, Wetzlar, Germany).
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4

Microglial Activation Analysis in Brain Tissue

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Unstained deparaffinized 5 μm-thick brain tissue sections were cut and processed with 3% hydrogen peroxide for 20 min, washed by PBS, and incubated with ionized calcium-binding adaptor molecule 1 (Iba-1) primary antibody (Abcam, USA, Catalogue No. ab108539) overnight at 4 °C after 1:100 dilution. HRP performed complex and 3,3̀-diaminobenzidine (DAB) were used for detection of Iba+ microglia according to manufacturer’s instructions (Dako, Denmark). After washing by PBS, tissue slides were counter-stained with hematoxylin for microscopic analysis. Micrographs were captured by Full HD microscopic camera processed by Leica application module (Leica Microsystems GmbH, Wetzlar, Germany). The immunohistochemical examination was performed by an experienced investigator who was blinded to samples’ identity to eliminate any bias in the results.
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5

Histological Evaluation of Vaginal Tissue

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Vaginal samples were flushed with saline and then fixed in 10% formol saline for 72 hrs. The tissues were cut, treated with serial dilutions of alcohol, cleared in xylene then entrenched into Paraplast wax. A rotatory microtome was used to cut sections of tissue (4 µm), which were then placed on glass slides. Hematoxylin and Eosin were used to stain the tissues. All data and micrographs were obtained by a full HD microscopic camera operated by the Leica application module (Leica Microsystems GmbH, Wetzlar, Germany). The procedures for sample treatment and staining were carried out as per the methods described by Culling (Culling, 2013 ). The tissues were examined thoroughly and lesion scoring was performed for all groups.
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6

Histological Analysis of Brain Cortical Regions

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Tissue samples were flushed and fixed in 10% neutral buffered formalin for 72 hs. Samples were processed in serial grades of alcohols, and cleared in xylene. Then, samples were infiltrated and embedded into paraplast tissue embedding media. 4μn thick sagittal brain sections were cut by rotatory microtome for demonstration of cortical regions in different groups. The sections were stained by hematoxylin and eosin for general morphological examination and stained by toluidine blue for demonstration of damaged and intact neurons then examined by using light microscope (Leica Microsystems GmbH, Wetzlar, Germany). All standard procedures for samples fixation and staining were carried out according to Culling [45 ]. Six non-overlapping fields of cerebral cortex (magnification × 400) were randomly selected and scanned for the determination of numbers of intact neurons in toluidine blue-stained tissue sections. Morphological examination and data analysis were carried out using Leica Application module for tissue sections analysis attached to Full HD microscopic imaging system (Leica Microsystems GmbH, Germany).
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7

Histological Analysis of Skin Wound Healing

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Dissected Skin wound tissue samples were fixed in 10% neutral buffered formalin for 72 hrs. Samples were processed in serial grades of ethanol, cleared in xylene then infiltrated with synthetic paraplast tissue embedding medium. Tissue sections were cut by rotatory microtome at middle zones of different wound samples for demonstration of different skin layers. Then, fixed into glass slides and stained with hematoxylin and eosin as a general microscopic examination staining method. Masson’s trichrome stain was also utilized for the demonstration of collagen fibers. All standard procedures for samples fixation and staining were done according to Culling techniques.37 Six random non-overlapping fields from each sample were totally scanned and analyzed for obtaining the mean area percentage of segmented dermal collagen in Masson’s trichrome stained section.38 (link) All data and micrographs were obtained by using a Full HD microscopic imaging system operated by using Leica application module (Leica Microsystems GmbH, Germany) for histological analysis.
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8

Immunostaining of Rat Kidney EGFR and TDT

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3 μm thick renal sections of different groups were submerged in peroxidase for 10 minutes and washed. Then, the sections were immunostained with the primary rabbit polyclonal antibody to rat EGFR and terminal deoxynucleotidyl transferase (TDT) (Abcam, USA) at a concentration of 1 μg/ml and incubated overnight at 4°C. After washing the slides with Tris-buffered saline, 100 μl of poly-horseradish peroxidase (HRP) (Genemed Power-Stain 1.0 Poly HRP DAB) kits was added, incubated for 15 minutes, and rinsed 3 times with wash buffer for 2 minutes. The substrate solution was prepared by mixing diaminobenzidine (DAB) chromogen with DAB buffer solution, and then, it was added on slides and incubated for 5-10 minutes at room temperature. Slides were rinsed with tap water and counterstained with hematoxylin according to the manufacturer's instruction. Additionally, area % of immunoexpression levels of EGFR and TDT in kidney tissues was determined in 6 random fields per group using the Leica Application module attached to Full HD microscopic imaging system (Leica Microsystems GmbH, Germany).
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9

Measuring Hippocampal Proliferation via Ki-67

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The hippocampal proliferative activity was measured using Ki-67 immunohistochemistry to elucidate β-catenin's compensatory mechanism [52] (link). Tissue sections with a thickness of 5 μ were produced in paraffin, and the manufacturer's protocol for immunohistochemistry was followed. Deparaffinized recovered tissue slices were treated with 0.3% H 2 O 2 for 20 min. Then, at 4 °C overnight, brain samples were treated with Anti-ki67 (Cat. No. GTX16667, Genetex Co., USA, 1:100). Tissue sections were rinsed in phosphate buffered saline and treated with the secondary antibody HRP Envision kit (DAKO, USA) for 20 min before being washed and incubated with diaminobenzidine for 15 min. After that, tissue sections were washed by phosphate-buffered saline, and then hematoxylin counterstained, dehydrated, and cleared in xylene before being cover slid for microscopic analysis. Three random non-overlapping fields were selected and scanned from dentate gyrus (DG) regions of each sample for the determination of area-based percentage of immunoexpression levels of Ki-67 in immunohistochemically stained sections. All light microscopic examination and data were obtained using Leica Application module for histological analysis attached to full HD microscopic imaging system (Leica Microsystems GmbH, Germany) [53] (link).
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10

Cerebral Cortex Tissue Histology

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Brain (cerebral cortex) tissue samples (n = 3 per each group) were fixed in 10% neutral buffered formalin for 72 h, then processed in serial grades of alcohol, cleared in xylene, infiltrated, and embedded into Paraplast tissue embedding media. Then, 5-µm thick sagittal sections were cut by a rotatory microtome for demonstration of the whole cerebral cortex and mounted on glass slides. Tissue sections were stained by hematoxylin and eosin (H&E) as a general morphological examination staining method, then examined by the Leica Application module attached to the full HD microscopic imaging system (Leica Microsystems GmbH, Germany). All standard procedures were done according to Culling [45] .
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