The largest database of trusted experimental protocols

4 protocols using phos p65

1

Investigating Inflammatory Signaling Pathways

Check if the same lab product or an alternative is used in the 5 most similar protocols
LPS and Griess reagent (modified) were purchased from Sigma-Aldrich (St. Louis, MO, USA). Mouse TNF-α ELISA kit and IL-6 ELISA kit were purchased from eBioscience (San Diego, CA, USA). The antibody COX2, iNOS, phos-P65 (Ser536), P65, phos-TBK1, TBK1, phos-AKT (Ser473), AKT, phos-S6K (Thr389), S6K, phos–P38 (Thr180/Tyr182), P38, phos–JNK(Thr183/Tyr185), JNK, GAPDH (Cell Signaling, Danvers, MA, USA) and phos–ERK (Tyr204), ERK (Santa Cruz Biotechnologies, Santa Cruz, CA, USA), HRP-linked anti-mouse and anti-rabbit antibodies were obtained from Santa Cruz. SYBR Select Master Mix for RT-PCR amplification was purchased from Invitrogen Life Technologies (Carlsbad, CA, USA). Primers for TNF-α, IL-6, iNOS and GAPDH were from Invitrogen Life Technologies (Carlsbad, CA, USA).
+ Open protocol
+ Expand
2

Evaluating Intestinal Barrier Integrity

Check if the same lab product or an alternative is used in the 5 most similar protocols
The expression of junction proteins (ZO1, occludin) and the overall expression and phosphorylation level of proteins in NFκB signaling were detected by Western blotting. The frozen jejunum tissue lysed in cold radioimmunoprecipitation assay buffer containing a protease and phosphatase inhibitor cocktail (Roche, Indianapolis, IN, USA). Proteins (15 ng each) were separated by 10% SDS-PAGE and then transferred onto polyvinylidene fluoride membranes (Millipore, Billerica, MA, USA). After blocking with 5% nonfat milk in Tris-buffered saline, the membranes were incubated with primary and secondary antibodies and visualized using enhanced chemiluminescence reagents (Millipore, Billerica, MA, USA) with the Viber Fusion FX7 imaging system (Viber 7 Lourmat, PAR, France). Antibodies used for ZO1 (1:500) and occludin (1:500) were obtained from Servicebio (Wuhan, China). TLR4 (1:500) antibody was purchased from Bioss (Beijing, China). IKKβ (1:1000), phos-IKKβ (1:1000), IKBα (1:1000), P65 (1:1000), phos-P65 (1:1000), and β-actin (1:1000) antibodies were purchased from Cell Signaling (Danvers, MA, USA).
+ Open protocol
+ Expand
3

Western Blot Analysis of HIF-1α, NF-κB Signaling

Check if the same lab product or an alternative is used in the 5 most similar protocols
PDLCs were collected and lysed in radioimmunoprecipitation assay buffer. Protein content was determined using a BCA kit (Thermo Fisher Scientific, Waltham, MA, USA). Proteins were separated by 10% sodium dodecyl sulfate–polyacrylamide gel electrophoresis and electroblotted onto polyvinylidene fluoride membranes (Merck Millipore, Germany). After blocking, the membranes were incubated overnight at 4 °C in the presence of primary antibodies against HIF-1α (Proteintech Group, USA), phos-p65 (Cell Signaling Technology, USA), p65 (Abcam, Cambridge, UK), IκBα (Proteintech), and β-actin (ZSGB-Biotech, Beijing, China) at 1:1,000 dilution. After washing with TBST, the membranes were incubated with the corresponding secondary antibodies (1:10,000; ZSGB-Biotech) at room temperature for 1 h. The bands were visualized by a Bio-Rad system (ChemiDocTM MP Imaging System, USA) using an enhanced chemiluminescence kit (Applygen, Beijing, China). ImageJ software was used to quantify band intensities, the signals of which were normalized to that of β-actin or GAPDH.
+ Open protocol
+ Expand
4

Measuring Transcription Factor Activation

Check if the same lab product or an alternative is used in the 5 most similar protocols
PDLCs were collected and lysed in radioimmunoprecipitation assay buffer. Protein content was determined using a BCA kit (Thermo Fisher Scienti c, Waltham, MA, USA). Proteins were separated by 10% sodium dodecyl sulfate-polyacrylamide gel electrophoresis and electroblotted onto polyvinylidene uoride membranes (Merck Millipore, Germany). After blocking, the membranes were incubated overnight at 4°C in the presence of primary antibodies against HIF-1α (Proteintech Group, USA), phos-p65 (Cell Signaling Technology, USA), p65 (Abcam, Cambridge,UK), IκBα (Proteintech), and β-actin (ZSGB-Biotech, Beijing, China) at 1:1,000 dilution. After washing with TBST, the membranes were incubated with the corresponding secondary antibodies (1:10000; ZSGB-Biotech) at room temperature for 1 h. The bands were visualized by a Bio-Rad system (ChemiDocTM MP Imaging System, USA) using an enhanced chemiluminescence kit (Applygen, Beijing, China). ImageJ software was used to quantify band intensities, the signals of which were normalized to that of β-actin or GAPDH.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!