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4 protocols using imagej

1

Nikon and Olympus Imaging for Analysis

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Pictures were taken with Nikon D3300 camera with AF-P Nikkor 18–55 mm objective or with Olympus OMD EM1 camera with M. Zuiko Digital ED 60 mm f2.8 macro objective. Picture and video analysis and processing were done with Olympus viewer software, iMovie, ImageJ (Fiji), and Corel PaintShopt Pro X9.
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Data Analysis and Visualization

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Data were analyzed and plotted using Excel 2016 (Microsoft), ImageJ, and Corel Draw, and presented as mean values ± standard deviations (SD) of the results obtained in at least three replicates, unless indicated otherwise.
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3

Immunofluorescence Staining of Cultured Cells

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Cultivated cells were fixed for 20 min using 4% paraformaldehyde (PFA), washed and permeabilized in PBS with 0.02% TritonX-100 (Sigma Aldrich) and supplemented with 5% goat serum for 30 min. The applied primary antibodies were diluted in PBS as followed: rabbit anti-Nestin 1:200 (Millipore), mouse anti-S100B 1:500 (Sigma Aldrich), rabbit anti-Slug 1:100 (Cell-Signaling Technology), rabbit anti-p75 1:500 (Cell-Signaling Technology), mouse anti-β-III-tubulin 1:100 (Promega), rabbit anti-neurofilament-L 1:50 (Cell-Signaling Technology), anti-vGlut (Millipore) and anti-Synaptophysin (Millipore). They were applied for 1 h (cells) at room temperature. After three washing steps, secondary fluorochrome-conjugated antibodies (Alexa 555 anti-mouse or Alexa 488 anti-rabbit, Invitrogen, Life Technologies GmbH) were applied for 1 h at RT with a dilution ratio of 1:300. Nuclear staining was realized by incubation with 4,6-Diamidin-2-phenylindol (DAPI) (1 μg/mL, Applichem) in PBS for 15 min at RT. Finally, the samples were mounted with Mowiol (self-made). Imaging was performed using a confocal laser scanning microscope (CLSM 780, Carl Zeiss) and image processing was executed with ImageJ and CorelDRAW [48 (link)] (open source and Corel Corporation).
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4

Immunofluorescence Staining of Heart Tissue

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Cryosections of the heart auricle tissue or cultivated cells were fixed for 20 min using 4% paraformaldehyde (PFA), washed and permeabilized in PBS with TritonX-100 (tissue: 0.2%, cells: 0.02%, Applichem, Darmstadt, Germany) and supplemented with 5% goat serum for 30 min. The applied primary antibodies were diluted in PBS as followed: mouse anti-Nestin 1:200 (Millipore, Burlington, MA, USA), rabbit anti-S100B 1:500 (Dako, Glostrup, Denmark), rabbit anti-α-actinin (Cell-Signaling, Danvers, MA, USA), mouse anti Connexin 43 (Millipore). They were applied for 1 h (cells) or for 2 h (sections), both at room temperature (RT). After three washing steps, secondary fluorochrome-conjugated antibodies (Alexa 555 anti-mouse or Alexa 488 anti-rabbit, Invitrogen, Life Technologies GmbH, Carlsbad, CA, USA) were applied for 1 h at RT with a dilution ratio of 1:300. Nuclear staining was realized by incubation with 4,6-diamidin-2-phenylindol (DAPI) (1 μg/mL, Applichem) in PBS for 15 min at RT. Finally, the samples were mounted with Mowiol (self-made). Imaging was performed using a confocal laser scanning microscope (CLSM 780, Carl Zeiss, Oberkochen, Germany) and image processing was executed with ImageJ and CorelDRAW [25 (link)] (open source and Corel Corporation).
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