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9 protocols using igg2a isotype control

1

Modulation of B Cell Activation

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Isolated B cells were stimulated with oligodeoxynucleotide 2006 (CpG, InvivoGen, Wiltshire, U.K.) for 48 h. TLR signaling inhibition studies used the MyD88 inhibitory peptide Pepinh-MYD at the given concentration (InvivoGen). B cell stimulations were achieved using goat anti-human IgM/G/A F(ab′)2 (Jackson ImmunoResearch) fragments at 1 μg/ml, anti-CD40 (clone S2C6, Macbeth) at 5 μg/ml, or with IL-4 (PeproTech), IL-10, IL-21 (Miltenyi Biotec), PGE2 (Sigma-Aldrich), IL-15 (Miltenyi Biotec), and BAFF (Miltenyi Biotec) (all at 50 ng/ml). Proliferations assays were performed using a CellTrace Violet (CTV) cell proliferation kit (Life Technologies).
The CD161 blocking assay included 2 × 106 B cells/ml in 500 μl in a 48-well plate (Corning) with combinations of CpG (5 μM), anti-CD40 (5 μg/ml) plus IL-4 (50 ng/ml), anti-CD161 at 1 μg/ml (clone 191.B8, Miltenyi Biotec), and IgG2A isotype control (R&D Systems).
For LLT1 crosslinking, recombinant CD161 (R&D Systems) or IgG1 isotype control (R&D Systems) were bound to a 96-well ELISA plate (Greiner Bio-One, Stonehouse, U.K.) overnight prior to the addition of B cells and BCR stimulus as described above.
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2

CD161 Modulation of B Cell Activation

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Isolated B cells were stimulated with ODN 2006 (CpG, Invivogen, UK) for 48 hours. TLR signalling inhibition studies used the MyD88 inhibitory peptide Pepinh-MYD at the given concentration (Invivogen, UK). B cell stimulations were achieved using: goat anti-human IgM/G/A F(ab’)2 (Jackson ImmunoResearch, UK) fragments at 1 μg/ml, anti-CD40 (clone S2C6, Macbeth) at 5μg/ml. or with IL-4 (Preprotech, UK), IL-10, IL-21 (Milteny Biotec, UK), PGE2 (Sigma Aldrich, UK), IL-15 (Milteny Biotec, UK) and BAFF (Milteny Biotec, UK) all at 50ng/ml. Proliferations assays were performed using CellTrace™ Violet Cell Proliferation Kit (Life Technologies, UK).
CD161 blocking assay: 2×106 B cells/ml in 500μl in a 48-well plate (Corning, UK) with combinations of CpG (5μM), anti-CD40 (5μg/ml) + IL-4 (50ng/ml), anti-CD161 at 1μg/ml (clone 191.B8, Milteny Biotec, UK) and IgG2A isotype control (R&D Systems, UK).
LLT1 crosslinking: recombinant CD161 (rCD161, R&D Systems, UK) or IgG1 isotype control (R&D Systems, UK) were bound to a 96-well ELISA plate (Greiner bio-one, UK) overnight prior to the addition of B cells and BCR stimulus as described above.
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3

Interferon Pathway Activation in Fibroblasts

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Stromal fibroblasts were incubated with 0.25 – 25 μg/ml of poly (I:C) (Invivogen) for up to 24hr. Recombinant human IFNβ (PBL Assay Science, Piscataway, NJ) was used to stimulate fibroblasts at 1, 10 & 100 U/ml for 24hr. Interferon receptor blockade experiments were conducted using a mouse monoclonal anti-human interferon receptor 2 (IFNAR2) blocking antibody (R&D Systems, Minneapolis, MN) or an IgG2a isotype control at a final concentration of 10μg/ml for 1hr and then stimulated with poly (I:C) for 24hr. TLR3 blockade experiments were conducted with an anti-TLR3 mAb (clone TLR3.7) (Santa Cruz Biotechnology) or an IgG1 isotype control (R&D Systems) at a final concentration of 20 μg/ml for 1hr and followed by stimulation with poly(I:C) for 24hr.
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4

Hematopoietic Stem Cell Transplantation Protocols

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Lineage depletion was performed using the kit from Miltenyi Biotech, San Diego, CA according to the manufacturer’s instructions. For transplantation experiments, a single cell suspension obtained from BM of adult or E13.5 fetal liver (FL) donor mice was depleted of red blood cells using the PharmLyse® buffer from BD Biosciences, San Jose, CA. Viable cells were then counted and resuspended at the desired concentration in PBS supplemented with 1% BSA, and transplanted into recipient mice by tail vein injections. For transplantation experiments, 2×106 whole BM or FL cells were injected into lethally irradiated or non-conditioned recipients. For competitive transplants, 1×105 BM cells isolated from heterozygous CD45/1.CD45.2 mice were used as supportive cells.
Homing was performed according to our previously published protocol.[30 (link)]
For transplantation experiments using an anti-IL-11 antibody, lethally irradiated recipients were treated 6 h and 24 h after the first dose of irradiation with IL-11 blocking antibody or IgG2A isotype control (both from R&D Systems, Minneapolis, MN) at the dose of 1 mg/kg of body weight (by tail vein injection).[31 (link)] For these experiments, 3×106 whole BM cells were injected into lethally irradiated recipients by tail vein injection.
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5

Investigating IL-33 Modulation of Mast Cell Responses to Rhinovirus

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Human MCs (1 × 106/mL) were incubated with IL-33 (1–10 ng/mL, R&D Systems, Abingdon, UK) for 6–24 h in a humidified 37 °C incubator with 5% CO2 before transcriptomic and reverse transcription qPCR analyses. For HRV16 infection, MCs were pre-treated with IL-33 and then incubated with increasing multiplicity of infection (MOI: 1–7.5) of infectious virus or UV-irradiated virus (as a control) for 1 h, washed twice then resuspended in StemPro media (0.5–1 × 106/mL) for specified times before harvesting. For ICAM-1 blocking experiments, LAD2 MCs or CBMCs (1 × 106/mL) were treated with 10 ng/mL IL-33 for 23 h followed by 1 h with mouse anti-human ICAM-1 (clone BBIG-I1 (11C81), 10 µg/mL, R&D Systems, Abingdon, UK) or IgG2a isotype control (10 µg/mL, R&D Systems, Abingdon, UK). Experimental layouts are shown in Supplementary Materials File (Figure S1).
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6

Transwell Assay for Chemotaxis

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Transwell ChemoTx plates (5-µm pore size and 30-µl well volume) (Neuro Probe Inc, USA) were used to determine cell migration to latent and control secretomes. Cell subsets were fluorescently labelled using Calcein AM (BD Biosciences, Wokingham, UK) according to the manufacturer’s protocol. 2 x 104 labelled cells in 20µl of X-VIVO-15 per well were transferred to the transwell plate and incubated at 37°C for 2 hours with supernatants from mock, UV and latently infected CD14+ monocytes in the lower chamber. Supernatants from monocyte-derived macrophages stimulated with LPS were used as a positive control, while X-VIVO-15 alone was used as a negative control. Migrated cells were enumerated using an UV microscope, five fields of view of each well were counted and all conditions were run in triplicate. CXCL10 neutralization assays were performed using supernatants or supernatants treated with anti-CXCL10 neutralizing antibodies or IgG2a isotype control (R & D Systems) for 1 hour using the recommended neutralization procedure and dose of the manufacturer, prior to being used in the migration assays.
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7

Anti-IL-17A Therapy Post-Hematopoietic Cell Transplant

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Rat anti-mouse IL-17A (Clone #50104, catalog #MAB421) or IgG2A isotype control (Clone #54447, catalog #MAB006) antibody (R&D Systems, Inc., Minneapolis, MN) was administered weekly via intra-peritoneal injections (200μg/mouse, resuspended in 500μl sterile phosphate buffered saline [PBS]) starting 2 weeks post-HCT.19 (link)–21 (link) Based on pilot studies (data not shown), earlier and higher doses of anti-IL-17A were avoided due to concerns over potential impairment in hematopoietic cell engraftment.
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8

Blocking IFN Signaling Modulates PD-L1 Expression

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GBM1 cells were cultured at 5x104 cells/well. After 24 hrs, thawed CM and RCM were incubated for 1 hr at 4 °C with 0.75 % anti-human-IFNα, -IFNβ, or -IFNγ blocking antibody (alone or in combination; all Pestka Biomedical Laboratories, PBL) or isotype control (rabbit serum (IFNγ) or sheep serum (IFNα and IFNβ) alone or in combination; both Sigma). Simultaneously, when GBM1 cells were to be treated with anti-human-IFNα/IFNβ blocking antibodies, 1.25 % anti-human IFNα/β receptor chain 2 antibody (PBL), or IgG2a isotype control (R&D Systems) were added to cells for 1 hr at 37 °C. Prepared CM/RCM (including block/isotype) was then added for 4 hrs at 37 °C before medium was removed and replaced with full growth medium. After 24 hrs, cells were harvested and stained for PD-L1 expression as described above.
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9

Eosinophil Depletion in Tumor Model

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To deplete eosinophils, mice were treated via intraperitoneal injection with 0.6mg/kg anti-Siglec-F (238047, R&D Systems) or IgG2A isotype control (54447, R&D Systems). WT mice were treated one day after i.v. EO771 injection, and every 5 days thereafter. Mice were euthanized at various timepoints after i.v. injection via CO2 asphyxiation.
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