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Skyscan 1172 microtomograph

Manufactured by Bruker
Sourced in Belgium

The Skyscan 1172 microtomograph is a compact desktop X-ray microtomography system designed for high-resolution 3D imaging of small samples. It provides non-destructive, high-resolution visualization and analysis of the internal structure of a wide range of materials.

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12 protocols using skyscan 1172 microtomograph

1

Micro-CT Scanning of Marine Samples

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All scans were performed with a SkyScan 1172 micro-tomograph (Bruker, Kontich, Belgium) at the Hellenic Center for Marine Research (HCMR), Institute of Marine Biology, Biotechnology and Aquaculture (IMBBC), Heraklion, Crete. The scanner uses a tungsten source and is equipped with an 11MP CCD camera (4000 x 2672 pixels), which can reach a maximal resolution of < 0.8 m m/pixel.
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2

Non-Destructive Microarchitectural Imaging of Insect

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The insect was killed by keeping it for 30 min inside a closed plastic container with a piece of cotton impregnated with a few drops of ethyl acetate. It was then glued, using cyanoacrylate, to the tip of a nylon fishing line 200 μm in diameter, as previously described48 , and immediately scanned using a Bruker SkyScan 1172 microtomograph (Bruker-micro CT, Kontich, Belgium) with a Hamamatsu L702 X-ray source and a Ximea 11 megapixels camera. The setting parameters were as follows: voltage = 45 kV; current = 45 µA; isotropic voxel size = 1 µm; image rotation step = 0.3°; 360° of rotation scan with no filter. This resulted in a scan duration of 2 h:11 min:39 s, and 1202 X-ray images. The specimen was air-dried, stored and 14 months later it was scanned again to compare the dry preserved internal anatomical structures of the tracheal system (Supplementary Video S4) with the original images from ‘fresh’ material. For this latter scan the setting parameters were the same as the first scan except that it was performed with an 180° rotation scan, resulting in a scan duration of 1 h:10 min:33 s, and 642 X-ray images.
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3

High-Resolution Micro-CT Imaging of Drosophila Heart

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Drosophila specimens were fixed in 4% formaldehyde and gradually dehydrated to 96% ethanol for 3 days. Subsequently, specimens were stained using 1% iodine dissolved in 96% ethanol (for the complete staining protocol see, Metscher, 2009 (link)) to increase the contrast between the soft tissues. Drosophila scans were performed with a SkyScan 1172 micro‐tomograph (Bruker). The scanner uses a tungsten source and is equipped with an 11 PM CCD camera (4000 × 2672 pixels). Samples were scanned at a voltage of 50 kV and a current of 198 μA without filter and a pixel size of ~2.90 μm for a half rotation of 180°. Projection images were reconstructed into cross sections using SkyScan's NRecon software (Bruker), which employs a modified Feldkamp's back‐projection algorithm. 3D analysis was performed for each scan using the software CT Analyser v.1.14.4.1 (Bruker) to calculate the thickness of the heart's conical chamber. Structure thickness calculation is based on the sphere‐fitting algorithm (Hildebrand & Rüegsegger, 1997 (link)). To study the dimensions of the studied flies' conical chamber, five different slices per sample (n = 7) were analyzed; measurements in x and y axes were taken using identical settings.
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4

3D Printed Tablet Microstructure Analysis

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Micro-computed tomography (µ-CT) analysis was performed using a SkyScan® 1172 microtomograph (Bruker®, Billerica, MA, USA). It was applied to examine the structure of the 3DP tablets with 20%, 35%, and 60% of infill and to verify the repeatability of printing process (the data collected for three tablets with 35% of infill were compared). The image pixel size was 6.9 µm for measurements of all samples. A cone beam reconstruction software program (Nrecon SkyScan®, Bruker®, Billerica, MA, USA) based on the Feldkamp algorithm was used for the reconstruction of the projections. A CT-Analyser® (SkyScan®, Bruker®, Billerica, MA, USA) was used for binarization purposes. The procedure was based on density distribution histograms collected for the whole sample volume. A CT-Analyser® was also used for the characterization of the morphological features of the tablets, their volume, and surface. CTVox® software (Bruker®, Billerica, MA, USA) was applied to present the 3D results.
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5

Xenograft and Intra-Bone Tumor Models

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The xenograft (n = 6) and intra‐bone models (n = 6) were established on NOD.Cg‐PrkdcscidIl2rgtm1Wjl/SzJ as before.27, 28 After indicated time, mice were treated with BTZ (i.p., 0.5 mg/kg) and MLN8237 (5 mg/kg, i.g., with β‐cyclodextrin) solo or together every 2 days. For xenograft models, mice were weighed and tumours were measured every 2 days. Micro computed tomography (CT) analysis with Skyscan 1172 microtomograph (BrukermicroCT, Kontich, Belgium), three‐dimensional (3D) models reconstruction with a surface‐rendering program (Ant, release 2.0.5, Skyscan) and 3D measurements with the CtAn software (release 2.5, Skyscan) were performed on the intra‐bone models. The corresponding parameters including trabecular separation, trabecular volume (BV/TV, in %), cortical thickness and trabecular number (Tb.N, in mm‐1) were calculated on the femur body of intra‐bone model.
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6

Comprehensive Bone Microstructure Analysis

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MicroCT analyses were performed after 3-point bending on left femurs with a Skyscan 1172 microtomograph (Bruker MicroCT, Kontich, Belgium) operated at 70 kV, 100 µA, 340-ms integration time. The isotropic pixel size was fixed at 4 µm, the rotation step at 0.25° and exposure was done with a 0.5-mm aluminium filter. Each 3D reconstruction image dataset was binarized using global thresholding. Trabecular volume of interest (VOI) was located 0.5 mm above the distal growth plate and extended on 2-mm up to the diaphysis. Cortical volume of interest was positioned at the femur midshaft 4 mm above the distal growth plate and extended on 0.5 mm in upward and downward directions. All microCT parameters were determined according to guidelines and nomenclature proposed by the American Society for Bone and Mineral Research [13] . After microCT scans, femurs were embedded undecalcified in polymethylmethacrylate at 4°C. Coronal sections of the distal half (7-µm thickness) were cut, stained with conventional bone staining (Goldner trichrome, toluidine blue, tartrate resistant acid phosphatase) and analysed by a trained bone pathologist blinded to the treatment group.
Histomorphometrical parameters were assessed according to the guidelines provided by the American Society for Bone and Mineral Research [14] .
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7

Quantifying Bone Mineral Density Using MicroCT

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MicroCT analyses were performed with a Skyscan 1172 microtomograph (Bruker MicroCT, Kontich, Belgium) operated at 70 kV, 100 μA, 340-ms integration time. The isotropic pixel size was fixed at 4 μm, the rotation step at 0.25° and exposure was done with a 0.5-mm aluminum filter. To calibrate for bone mineral density, hydroxyapatite (HA) rods (2-mm diameter, at hydroxyapatite densities of 0.25 and 0.75 gHA/cm3) and volumes of saline and air were also scanned with the same parameters. Each 3D reconstruction image dataset was binarized using global thresholding. Trabecular volume of interest (VOI) was located at the proximal tibia, 0.5 mm below the growth plate and extended 2 mm down. Using the hydroxyapatite calibration scans, the grayscale dataset was transformed into Hounsfield units (HU) by assigning an HU value of 0 to the average grayscale index of saline, and an HU value of −1,000 to black pixels (air). Next, average HU values for the two mineralized phantoms (0.25 and 0.75 gHA/cm3) were used to create a linear relationship between HU and mineral density.The threshold value to discriminate mineralized tissue from bone marrow was set at 0.4 g/cm3 and resulting binarized images were compared visually with original images. All microCT parameters were determined according to guidelines and nomenclature proposed by the American Society for Bone and Mineral Research (32 (link)).
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8

Micro-CT Imaging of Tissue Scaffolds

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SkyScan 1172 micro-tomograph (Bruker, Kontich, Belgium) was used to create a projection of cells and regenerated tissue growing within scaffolds. This scanner uses a tungsten X-ray source and is equipped with an 11 MP CCD camera (4000 × 2672 pixels). All specimens were scanned at a voltage of 59 kV and 167 μA. Camera was without filter; it was fully rotating 360° at the highest resolution. SkyScan’s NRecon software (NRecon, Bruker, Kontich, Belgium) was used to reconstruct sliced projected images (6 μm/slice) into cross-section images by implementation of a modified Feldkamp’s back-projection algorithm. All scans were loaded into the CTVox software (CTVox, Bruker, Kontich, Belgium) to render the proportion of the area occupied by the cells and the regenerated tissue throughout the scaffold’s architecture. Animated videos and images were created to visually represent the tissue formation inside scaffolds. Scaffolds under all described experimental conditions and at all three time points were studied with micro-CT.
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9

Multimodal Brain Imaging Microstructure

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One adult brain and one S32 embryo were removed from fixative by washing several times with PB saline for 2 days, dehydrated in increasing concentrations of methanol, and stained with 1% phosphotungstic acid in methanol for 4 days before micro-CT scanning with a Bruker Skyscan 1172 microtomograph (Bruker, Kontich, Belgium) located at the Marine Biology Station of the University of Santiago de Compostela in A Graña. The obtained images were digitally reconstructed with NRecon software (Bruker, Kontich, Belgium) and processed with CTAnalyzer software (Bruker, Kontich, Belgium). For displaying data, DataViewer software (Bruker, Kontich, Belgium) was used. Serial images of the three axis and 3D reconstructed images of each sample were obtained.
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10

Micro-CT Analysis of Tibial Bone

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MicroCT analyses were performed on tibias with a Skyscan 1172 microtomograph (Bruker MicroCT, Kontich, Belgium) operated at 70 kV, 100 µA, 340-ms integration time. The isotropic pixel size was fixed at 4 µm, the rotation step at 0.25° and exposure was done with a 0.5-mm aluminum filter. Each 3D reconstruction image dataset was binarized using global thresholding. Trabecular volume of interest (VOI) was located 0.5 mm below the growth plate and extended on 2-mm. Cortical volume of interest extended on 1-mm centered at the midshaft tibia. All histomorphometrical parameters were determined according to guidelines and nomenclature proposed by the American Society for Bone and Mineral Research [26] .
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