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20 protocols using anti cd3 bv421

1

Phenotypic Characterization of aAPCs

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For analysis, the cells were harvested and incubated with fluorescently labeled anti-human antibodies for 30 min at 4 °C in the dark. Each sample was stained by 1 ul of each antibody at a concentration of 0.2 mg/mL in 100 ul of PBS containing 2% FBS. In flow cytometry, live aAPCs or CD3+ Jurkat cells were gated and recorded in at least 1 × 104 cells to determine the GFP expression rate. The following antibodies were used to detect targeting molecules: anti-CD80-PE (BioLegend, San Diego, CA, USA), anti-CD83-PE (BioLegend, San Diego, CA, USA), anti-CD137L-PE (BioLegend, San Diego, CA, USA), anti-CD-32-FITC (BioLegend, San Diego, CA, USA), anti-CD9-PE (BioLegend, San Diego, CA, USA), anti-CD63-PE (BioLegend, San Diego, CA, USA), anti-CD81-PE (BioLegend, San Diego, CA, USA), anti-CD8α-PerCP-cy5.5 (BioLegend, San Diego, CA, USA), and anti-CD3-BV421 (BioLegend, San Diego, CA, USA). Fluorescence was measured using a BD FACS Canto (BD Biosciences) and analyzed using the FlowJo v10 software (BD Biosciences).
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2

Multicolor Flow Cytometry Immunophenotyping

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anti-CD14-BV570 (301831, Biolegend), anti-CD11c-PerCP-Cy5.5 (337210), anti-HLA-DR-AlexaFlour700 (307626) all from Biolegend, anti-CD66a/c/e-QDot605 (342302, Biolegend, with in-house conjugation to QDot605, Q-22001), anti-CD16-PE-Cy5 (555408, from BD Biosciences), anti-IL-12-PE (554575), anti-TNF-α-PE-Cy7 (25-7349-82) both from eBioscience, anti-IL-10-PE (506804), anti-IL-6-APC (501112), anti-CD3-BV421 (300434), anti-CD19-BV421 (302233) and anti-CD335-BV421 (331913) all from Biolegend.
Cryopreserved, fixed white cells were washed in PBS and stained for 1 hour at 4°C with surface marker antibodies. For intracellular staining, cells were permeabilized with Perm/Wash buffer (BD Biosciences) and incubated for 1 hour at 4°C with antibodies for intracellular markers. Fixed cells were then acquired on a LSR II flow cytometer (BD Biosciences).
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3

Phenotyping of Cytotoxic T Cells

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Target cells were harvested and stained with fluorescent-labeled anti-human antibodies for 30 min at 4°C in the dark, as follows. The following antibodies were used: anti-CD8α-PE (BioLegend, San Diego, CA, USA; cat. no. 300908), anti-CD8α-APC-Cy7 (BioLegend; cat. no. 300926), anti-CD8β-APC (Miltenyi, Bergisch Gladbach, Germany; cat. no. 130-110-569), anti-CD3-BV421 (BioLegend; cat. no. 317344), CMV pp65495-503 Tetramer-PE (NLVPMVATV, ProImmune, Oxford, UK), and anti-4-1BB-APC (BioLegend; cat. no. 309810). Fluorescence was measured using a BD FACS Canto or Canto II (BD Biosciences, San Jose, CA, USA) and analyzed using FlowJo software (BD Biosciences).
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4

Quantifying Immune Cell Populations

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Animals were sacrificed at the end of the experiment and their blood was collected. Red blood cells were lysed with lysis buffer (Sigma Aldrich, R7757) and white blood cells (WBCs) were stained with anti-CD11b-PE (BioLegend, cat#: 101207, clone: M1/70), anti-Gr1-biotin (Invitrogen, cat#: 13-5931-81, clone: RB6-8C5) and streptavidin-PerCP eFluor™710 (Invitrogen, cat#: 46-4317-82), anti-CD19-APC (Invitrogen, cat#: 17-0193-80, clone: eBio1D3) and anti-CD3-BV421 (BioLegend, cat#:100227, clone: 17A2) antibodies to quantify immune cell populations. Flow cytometry was performed using an LSRFortessa (BD Biosciences) and results were analysed using FlowJo software (Tree Star Inc.). The student’s t-test was used for statistical analysis, using Prism (GraphPad software).
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5

SARS-CoV-2 ORF8 Protein Stimulation of PBMCs

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PBMCs, purified monocytes, or PBMCs depleted in monocytes from different donors were treated with ORF8 produced in 293T cells for 16 h at 37 °C and 5% CO2. As control, PBMCs were treated with an identical volume of conditioned media collected from 293T cells transfected with a control plasmid (pc DNA 3.1). Alternatively, PBMCs were treated with a commercially available ORF8 (SARS-CoV-2 ORF8 (aa16-121), His Tag (RP-87666), Thermo Fisher Scientific, Waltham, MA, USA) at different concentrations (from 3.2 pg/106 PBMCs to 250 ng/106 PBMCs). Following treatment, cells were stained with anti-CD3 BV-421 (BioLegend, San Diego, CA, USA, Cat. 300434), anti-CD19 BV-421 (BioLegend, San Diego, CA, USA, Cat. 302233), anti-CD14 PerCP-Cy5.5 (BD, Franklin Lakes, NJ, USA, Cat. 550787), anti-CD56 PE (BD, Franklin Lakes, NJ, USA, Cat. 340363), anti-CD16 FITC (BD, Franklin Lakes, NJ, USA, Cat. 555406) and LIVE/DEAD Fixable Aqua Dead Cell Stain (Thermo Fisher Scientific, Waltham, MA, USA, Cat. L34966) for 25 min at 4 °C to identify the monocytes and NK cells among the PBMC population and to measure their surface level of CD16. After staining, the cells were fixed with 2% PFA and stored at 4 °C until the samples were acquired on a LSRII cytometer (BD Biosciences, Mississauga, ON, Canada). Data analysis was performed using FlowJo v10.5.3 (Tree Star, Ashland, OR, USA).
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6

Flow Cytometry Staining of MR1 Tetramers

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SKW-3.β2mnull.CD8αα or SKW-3.β2m null.CD8αβ (105 per sample) were stained with MR1 or MHC-I tetramers in PBS + 2% FBS for 20 min at 4°C in the dark. Cells were washed with PBS + 2% FBS and resuspended in a surface antibody stain consisting of anti-CD3-BV421 (#562426, UCHT1; BD Horizon), anti-CD8α-BUV805 (#564912, SK1; BD Horizon), anti-CD8β-APC (#641058, 2ST8.5H7; BD FastImmune), and LIVE/DEAD fixable Near-IR dead cell stain (#L10119; Thermo Fisher Scientific) for a further 20 min at 4°C in the dark. Cells were washed twice with PBS + 2% FBS and data were acquired using a BD LSR Fortessa (BD Biosciences). PBMCs were stained with MR1 tetramers as described in (Souter et al., 2019 (link)). In brief, PBMCs (107 per sample) were stained with MR1 tetramer in PBS + 2% FBS for 30 min at room temperature in the dark, washed with PBS + 2% FBS, and stained with surface antibodies anti-CD3-BV421, anti-CD19-APC-Cy7 (#302218, HIB19; Biolegend), anti-CD14-APC-Cy7 (#557831, MφP9; BD Pharmingen), anti-CD8α-BUV805, anti-CD8β-APC, anti-CD161-PE-Vio770 (#130-113-597, REA631; Miltenyi Biotec), anti-CD4-AF700 (#557922, RPA-T4; BD Pharmingen), and LIVE/DEAD fixable Near-IR dead cell stain for 20 min at 4°C. Cells were washed twice and resuspended in PBS + 2% paraformaldehyde (PFA) before data acquisition on a BD LSR Fortessa.
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7

Flow Cytometry Protocol: Fc Blocking and Cell Labeling

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Purified anti-CD16/32 (Fc Block) and anti-CD8 (A488) antibodies were purchased from BD Biosciences; anti-CD3 (BV421) and anti-CD90.2 (antigen presenting cell [APC]) antibodies were purchased from BioLegend.
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8

Isolation and Phenotyping of Human Neutrophils

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Peripheral blood mononuclear cells (PBMCs) were isolated via centrifugation on a Ficoll–Paque PLUS gradient (GE Healthcare, Uppsala, Sweden). Neutrophils were further isolated after dextran sedimentation and hypotonic lysis as previously described (20 (link)).
Fresh EDTA anti-coagulated peripheral blood (100 μl) was incubated with antibodies for 30 min in the dark. The following antibodies were used: Anti-CD66b-PE-cy7, anti-TLR2-FITC, anti-TLR4-APC, anti-CXCR1-APC, anti-CXCR2-FITC, anti-C5aR-APC, anti-CD64-PE, anti-CD177-APC, anti-CD62L-FITC, anti-CD11b-PE, anti-CD49d- FITC, anti-C5L2-PE, anti-CD3-BV421 and anti-PD-1-PE were obtained from Biolegend (San Diego, California, USA); anti-CD4-BV421, anti-CD8-APC-cy7, anti-CD38-FITC, and anti-HLA-DR-PerCP were purchased from BD Biosciences (Franklin Lakes, New Jersey, USA); anti-PD-L1-PE were bought from eBioscience (San Diego, California, USA). Isotype-matching antibodies were used as negative controls. After lysing the red blood cells, the remaining cells were washed and fixed for flow cytometry analysis.
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9

Multiparametric Immune Cell Profiling

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Frozen PBMCs were rapidly thawed at 37°C and gently resuspended by serial additions of Lymphocyte medium to a final volume of 10 mL. Cells were centrifuged at 300 x g for 6 minutes and resuspended in 1 mL of Lymphocyte medium and 10 U/mL DNase I (New England Biolab, Cat: M0303). PBMCs (3.0×106 cells) were stained by incubation with the following panel at 4°C for 20 minutes: FcR blocking reagent (Miltenyi Biotec, 1:50), anti-αβTCR-PE/Cy7 (BioLegend, Clone: IP26, Cat: 306720, 1:100), anti-CD3-BV421 (BioLegend, Clone: UCHT1, Cat: 300434, 1:100), anti-CD4-redFluor 710 (Tonbo Biosciences, Clone: OKT4, Cat: 80–0048, 1:100), anti-CD8-PerCP/Cy5.5 (BioLegend, Clone: RPA-T8, Cat: 301032, 1:100), anti-CD14-APC/Cy7 (BioLegend, Clone: HCD14, Cat: 325620, 1:100), anti-CD16-APC (Tonbo Biosciences, Clone: 3G8, Cat: 20–0166, 1:100), anti-CD19-Super Bright 645 (eBioscience, Clone: SJ25C1, Cat: 64–0198-42, 1:100), and anti-CD56-Alexa Fluor 488 (BD Biosciences, Clone: B159, Cat: 557699, 1:100) antibodies. Cells were then spiked with 7-AAD (Tonbo Biosciences, 1:200) and incubated at 4°C for 10 minutes. Cells were washed once, resuspended in 200 μL of FACS buffer, and filtered in Cell Strainer tubes (Corning, Cat: 352235). Cells were sorted with a BD FACS Aria (BD Biosciences).
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10

Cytotoxicity Assay of HVS-T Cells

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HVS-T cells were dispensed into a U-bottomed 96-well plate at a density of 2×105 cells/well, in 200 μL HVS-T medium without rIL-2. Cells were simultaneously stimulated and stained with aAPCs (6×105 beads/well) and anti-CD107a-Alexa Fluor 647 (BioLegend, Clone: H4A3, Cat: 328612, 1:200) for five hours at 37°C. Cells were then transferred to the wells of a V-bottomed 96-well plate containing 7 μL of the staining mix [7-amino-actinomycin D (7-AAD, Tonbo Biosciences, Cat: 13–6993) 2 μL, anti-CD3-BV421 (BioLegend, Clone: UCHT1, Cat: 300434) 1 μL, anti-CD4-APC/Cy7 (BioLegend, Clone: RPA-T4, Cat: 300518) 2 μL, and anti-CD8-FITC (BioLegend, Clone: RPA-T8, Cat: 301060) 2 μL] and incubated for 10 minutes at 4°C in the dark. The supernatant was removed, and cells were washed once and then resuspended in cold FACS buffer and acquired with a BD LSR II Flow Cytometer (BD Biosciences). Cells were kept on ice during acquisition.
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