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11 protocols using nylon syringe filter

1

Synthesis of Tungsten Complexes

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Tungsten(vi) chloride (99.9%) was purchased from Strem Chemicals. Chlorobenzene (99+%, for spectroscopy), and tungsten(vi) oxide (99.9%) were purchased from Sigma-Aldrich. Acetonitrile (Certified ACS), dichloromethane (Certified ACS), ethanol (200 proof), benzyl alcohol (Certified ACS), and 5-(hydroxymethyl)-2-furfural (98%) were purchased from Fisher Scientific. Acetonitrile-d3 was purchased from Cambridge Isotope Laboratories. Benzyl alcohol was vacuum distilled and stored on sieves under N2. All other reagents were used as received. Nylon syringe filters (25 mm, 0.2 μm membrane) were purchased from VWR or Macherey-Nagel.
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2

Simultaneous Mycotoxin Quantification Protocol

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Methanol (MeOH) and acetonitrile (MeCN) of LC-MS grade, and ammonium formate were supplied by VWR International Eurolab S.L. (Barcelona, Spain). Formic acid eluent additive for LC–MS was obtained from Sigma Aldrich (St. Louis, MO, USA). Magnesium sulphate (MgSO4), sodium chloride (NaCl) and sodium citrate were purchased from Panreac Química (Barcelona, Spain), while disodium hydrogen citrate sesquihydrate was supplied by Merck (Darmstadt, Germany). Ultrapure water was obtained from a Milli-Q Plus system (Millipore Bedford, MA, USA).
Mycotoxin standard solutions (10 mg/L in MeCN) of OTA, STE, F-X, DON, CIT, ZEN, FB1, FB2, T-2 and HT-2 were purchased from Techno Spec (Barcelona, Spain). Individual standards (powder) of ENNA, ENNA1, ENNB, ENNB1 and BEA were obtained from Sigma Aldrich and stock solutions were prepared at 1000 mg/L in MeCN. Multi-mycotoxins intermediate working solutions in MeCN (1 mg/L of OTA and STE; 2 mg/L of CIT; 10 mg/L of FB1, FB2, T-2, HT-2 and ZEN; 100 mg/L of DON, ENNA, ENNA1, ENNB, ENNB1 and BEA and 1000 mg/L of F-X) were prepared by combining suitable aliquots of each individual standard stock solution. These solutions were stored at −20 °C.
Nylon syringe filters (13 mm, 0.22 μm, from VWR) were used for filtration of extracts prior to the injection into the chromatographic system.
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3

REE Extraction from Bauxite Residue

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Leaching experiments were conducted inside a 1 L glass reaction vessel and heating was provided through a heating mantel. Temperature was controlled within ±1 °C of the set point. The reactor slurry was kept suspended by a shaft stirrer (600 and 1000 rpm). Samples were withdrawn through a dip rubber tube using a syringe and filtrations were performed using 0.45 μm nylon syringe filters from VWR. They were diluted with 5% HNO3 and stored in sealed plastic test tubes at room temperature. These samples were analyzed with ICP-OES (Perkin Elmer Optima 8000) to determine the concentration of REEs, Al, Ti and Fe in the leached solution. Leaching experiments were initially conducted for 2.5 h, and after analysis it was found that the REE leaching reaches its maximum at 30 min and plateaus beyond this point; thus 30 min was selected as the optimum residence time. To calculate the leaching efficiency, we used each REE concentration in the leach solution and the mass of the solid used in the experiment to calculate the mass of extracted REE per unit mass of solid (ppm, i.e., mg/kg) and divided that value by the REE concentration in the bauxite residue (presented in Fig. 2a). Reproducibility tests (four independent experiments) showed that the experimentally measured data are accurate to within ±5%.
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4

Extraction of Garlic Organosulfur Compounds

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The extraction of organosulfur compounds (OSC) was performed according to previously described procedure (13 (link)) with some modifications. OSC were extracted from garlic samples (5.000±0.001) g with 20 mL distilled water, homogenised in a vortex mixer (ZX3; VELP Scientifica Srl) for 1 min and centrifuged at 2800×g for 5 min (Z 206 A; Hermle Labortechnik GmbH, Wehingen, Germany). The supernatants (1 mL) were transferred in 2.5-mL Eppendorf tubes (Sarstedt AG & Co. KG, Nümbrecht, Germany) and 1 mL acetonitrile was added, homogenised in a vortex (ZX3; VELP Scientifica Srl) for 1 min and centrifuged at 112´g for 5 min. Afterwards, supernatants were filtered through 0.25-µM nylon syringe filters (VWR-International, Darmstadt, Germany) and placed directly into HPLC vials and injected on HPLC column.
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5

Microfluidic Device Fabrication Protocol

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Bare silicon wafers were obtained from University Wafers (Boston, MA). 1.5 mm and 2 mm thick poly (methyl methacrylate), PMMA, sheets were purchased from Evonik (Sanford, ME). 1 mm and 2 mm thick cyclic olefin polymer, COP, ZEONOR 1060 R sheets were purchased from Zeon Specialty Materials (San Jose, CA). Fluorinert FC 40, optiprep density gradient medium, 10-μm size streptavidin-functionalized magnetic beads, and biotin-β-Galactosidase were purchased from Sigma Aldrich (Milwaukee, WI). Novec 7500 Engineered Fluid was from 3M (Maplewood, MN). Fluorosurfactant-008 for droplet stabilization was purchased from RAN Biotechnologies (Beverly, MA). Potassium hydroxide pellets and resorufin-β-D-galactopyranoside were from Thermo Fisher Scientific (Waltham, MA). Food coloring dyes were obtained from McCormick (Baltimore, MD). Heptadecafluoro-1,1,2,2-tetrahydrodecyltrichlorosilane used for PMMA and COP channel surface modification was purchased from Gelest (Morrisville, PA). All solutions were passed through Nylon syringe filters (0.2 μm pore size) from VWR International (Radnor, PA) to remove particulates. NdFeB permanent magnets were purchased from K&J Magnetics, Inc. (Pipersville, PA). All aqueous solutions were prepared in 18 MΩ deionized water purified using a Barnstead GenPure water purifying system from Thermo Scientific (Waltham, MA).
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6

Polyphenol Extraction from Wild Blueberries

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Polyphenolics were extracted by homogenizing 5 g of WBB-containing food product or 1 g of WBB powder in 25 mL of extraction solution containing methanol/water/formic acid (60:37:3 v/v/v), to the smallest particle size using a Euro Turrax T18 Tissuemizer (Tekmar-Dohrman Corp, Mason, OH, USA) for 1 min. Homogenates were centrifuged for 5 min at 10,864 × g. The pellet was re-extracted two additional times with 25 mL of extraction solution and centrifuged for 5 min at 10,864 × g. The filtrates were pooled and adjusted to 100 mL with extraction solvent in a volumetric flask. Prior to HPLC analysis, 5 mL of extract were dried in a Thermo Savant Speed Vac Plus SC210A (Thermo Fisher Scientific, Waltham, MA, USA) and reconstituted in 1 mL 5% formic acid in water. All samples were passed through 0.45 µm nylon syringe filters (VWR, Radnor, PA, USA) into 1 mL HPLC vials prior to HPLC analysis. The ice pop and juice samples did not undergo extraction due to prior extraction of anthocyanins to make the concentrate used in the formulation but were filtered using the 0.45 µm nylon syringe filters prior to HPLC analysis.
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7

Quantification of Organic Acids and Lactose

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Organic acids and lactose were extracted using a method modified from Upreti et al. (2006) . Permeates were analyzed at 10% solids. One hundred microliters of each sample was extracted in 900 μL of 0.013 N H 2 SO 4 (Sigma Aldrich, St. Louis, MO), vortexed, and centrifuged at 8,000 × g at room temperature (21°C) for 5 min. The top layer was removed and filtered using 0.45-μm nylon syringe filters (VWR International, West Chester, PA). Twenty microliters of each sample was injected on the HPLC (Waters 1525 Binary Pump, Waters, Milford, MA) using an autosampler (Waters 2707 Autosampler) onto the column (0.8 mL/min, 300 × 7.8 ion exclusion, 55°C; Bio-Rad Labs, Richmond, CA). Each replicate of each permeate was injected in duplicate. The temperature of the injector was 4°C and a photodiode array detector (Waters 2998) was used for organic acids and a refractive index detector (Waters 2414 Refractive Index Detector, 30°C) was used for lactose. The maxima used for organic acid calculation was 254 and 285 nm due to citric and orotic acids coeluting at 254 nm. Citric acid was not detected at 285 nm. A standard curve was created for each organic acid and lactose. Organic acid standards were obtained from Thermo Fisher Scientific Inc. (Pittsburgh, PA) and lactose standard was obtained from Sigma Aldrich.
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8

Equilibrium Azithromycin Solubility Assessment

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Equilibrium azithromycin solubility of the raw azithromycin, the spray-dried azithromycin, physical mixtures (at the same molar composition as spray-dried formulations in Table 1) of azithromycin and colistin as well as the spray-dried composite formulations was determined (33 (link)). Briefly, an excess of azithromycin (i.e., 5 mg/mL equivalent of azithromycin of each formulation) was added to 5 mL of phosphate buffer saline (PBS, pH 7.4) maintained at room temperature (22 ± 2 °C) and 37 ±1 °C. The resultant suspensions were constantly stirred at 500 rpm (VWR International, Arlington Heights, IL, USA) with the help of a magnetic bar (12 mm diameter and 5 mm diameter, VWR International, Arlington Heights, IL, USA). After 24 h the suspensions were filtered using a 0.45 µm nylon syringe filter (VWR International, Arlington Heights, IL, USA) and the concentrations of azithromycin and colistin were determined by the validated HPLC method.
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9

Patulin Extraction from P. expansum

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Petri dishes were washed with 3 mL of acidified distilled water for extracting patulin from P. expansum mycelium. Washing water was collected, centrifuged at 10,000× g for 7 min at room temperature (Beckman centrifuge, Allegra × 22, Fullerton, CA, USA), filtered through a 0.45 µm nylon syringe filter (VWR s.r.l., Milan, Italy) and analysed by HPLC. Results were reported as ppm of patulin per mL of dish washing water, according to our protocols [5 (link),45 (link)].
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10

Ash Material Microcosm Sampling and Analysis

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Overlying water was collected from the microcosms at time points before (−1 h) and after the ash material addition (24 h, 14 days). For aerobic microcosms, the air bubblers were turned off during sampling, and the supernatant samples were immediately centrifuged at 3,000 RPM for 5 min and then filtered through a 0.2-μm nylon syringe filter (VWR). For anaerobic microcosms, the supernatant was sampled in an anaerobic glove box and directly filtered (no centrifugation).
The sample filtrate was split and preserved for analysis of major and trace elements via ICP-MS, major anions via Ion Chromatography (Dionex), Dissolved Organic Carbon (Shimadzu TOC-L), and pH. Whole slurry samples (4 mL) were taken at the 14-day time point for analysis of acid volatile sulfide. These aliquots were frozen at −20°C immediately after sampling. Further details on sample preservation and analysis can be found in the Supplementary Data section.
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