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13 protocols using glutamine

1

Coenzyme Q10 Effects on Fibroblasts

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CoQ10 powder, PureSorb-QTMTM40 (P40), which is containing 40 w/v% CoQ10, was kindly donated by Nisshin Pharma Inc. (Tokyo, Japan) for this study.(13 (link)) High performance liquid chromatography (HPLC) solvents and ethanol were purchased (HPLC grade) from Wako Pure Chemical Industries, Ltd. (Osaka, Japan). All other chemicals used were of analytical grade, available from commercial suppliers. Antibodies against type I collagen was obtained from COSMO BIO Co., Ltd. (Tokyo, Japan). Normal human dermal fibroblast (NHDF) was purchased from Lonza Co. Ltd. (Tokyo, Japan). Fibroblasts were grown in Dulbecco’s modified Eagle’s medium (DMEM; Nacalai Tesque, Kyoto, Japan) supplemented with 2% fetal bovine serum (FBS; MP Biomedicals, Illkirch, France), 2 mM glutamine, 100 units/ml penicillin and 100 mg/ml streptomycin (Nacalai Tesque). The cells were incubated under 37°C in a humidified atmosphere of 5% CO2 and 95% air in a CO2 incubator. After 24 h, culture medium was replaced by the DMEM containing 2% FBS and P40, and the cells were subsequently pre-cultured for 1 week in the CO2 incubator for all experiments in this study.
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2

Isolation and Characterization of SCAP

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Isolation and culture of SCAP were according to the previous study [1 (link)]. SCAP were isolated from the apical papilla tissue of the developing tooth root apex of extracted human impacted lower third molars of healthy donors as described in Additional file 2: Supplementary Methods. Attached colony-forming cells on plastic culture flasks were expanded. The growth medium consisted of 15% fetal bovine serum (FBS; Equitech-Bio, Kerrville, TX), 100 μM l-ascorbic acid 2-phosphate (Wako Pure Chemicals, Osaka, Japan), 2 mM l-glutamine (Nacalai Tesque, Kyoto, Japan), and premixed antibiotics containing 100 U/ml penicillin and 100 μg/ml streptomycin (Nacalai Tesque) in minimum essential medium Eagle alpha modification (αMEM; Thermo Fisher Scientific, Waltham, MA). The passage 3 (P3) cells were analyzed for determining the characterization as MSCs and SCAP according to previous reports [1 (link), 24 (link)] and were used for further experiments.
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3

RPE Cell Lines Evaluation and Stimulation

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Two human RPE cell lines, ARPE-19 cells [18] (link) and h1RPE7 cells [19] (link), were evaluated separately. ARPE-19 cells were grown in 1:1 mixture of Dulbecco's modified Eagles medium (Gibco®, Life Technologies, Carlsbad, CA) and Ham's F12 medium (Gibco®) containing 10% (v/v) fetal calf serum (FCS), 100 units/ml penicillin G (Wako Pure Chemical Industries, Ltd., Osaka, Japan), and 100 µg/mL streptomycin (Wako). h1RPE7 cells were purchased from European Collection of Cell Culture (Salisbury, UK) and were grown in Ham's F10 medium (Gibco®) containing 20% (v/v) FCS, 2 mM glutamine (Nacalai tesque, Kyoto, Japan) and 1 μg/mL puromycin (Gibco®). For the stimulation experiments, ARPE-19 cells were treated with 300 µg/mL AGE-bovine serum albumin (BSA) (Calbiochem®, Merck KGaA, Darmstadt, Germany), and/or 20 µM HQ (Wako). h1RPE7 cells were treated with 300 µg/mL AGE-BSA and/or 40 µM HQ.
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4

Human Retinal Pigment Epithelial Cell Culture Protocol for AMD

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Human RPE cells (h1RPE7 cells) [9] (link), were purchased from the European Collection of Cell Cultures (Salisbury, UK) and were grown in Ham's F10 medium (Gibco®, Life Technologies, Carlsbad, CA) containing 20% (v/v) fetal calf serum, 2 mM glutamine (Nacalai tesque, Kyoto, Japan) and 1 μg/mL puromycin (Gibco®). For the in vitro AMD model, h1RPE7 cells were treated with 300 μg/mL of AGE-bovine serum albumin (BSA) (Calbiochem®, Merck KGaA, Darmstadt, Germany) and 20 μM HQ (Wako Pure Chemical Industries, Ltd., Osaka, Japan) as described [8] . ARPE-19 cells were grown in 1:1 mixture of Dulbecco's modified Eagles medium (Gibco®) and Ham's F12 medium (Gibco®) containing 10% (v/v) fetal calf serum, 100 units/mL penicillin G (Wako), and 100 μg/mL streptomycin (Wako) as described [8] .
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5

Phytochemicals Sourcing and Preparation

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Oleic acid and resveratrol were purchased from Wako Pure Chem. Ind., Ltd. (Tokyo, Japan). Phenylalanine was from Nippon Rika (Tokyo, Japan). Quercetin was obtained from Sigma-Aldrich (St. Louis, MO). Apigenin and emodin were from Tokyo Chemical Industry (Tokyo, Japan). Cyanidin chloride and hesperidin were from Extrasynthese (Genay, France). Ferulic acid and genistein were from LKT Laboratories (St. Paul, MN). Dipeptidyl peptidase (DPP) IV inhibitor was from Calbiochem (San Diego, CA). Palmitic acid, glutamine, glucose, sucrose, chlorogenic acid hemihydrates, (–)-epigallocatechin-3-gallate, curcumin and pyruvate were obtained from Nacalai Tesque (Kyoto, Japan). All other chemicals were of the highest grade commercially available.
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6

Differentiation of Monocytes and Osteoclasts

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Human CD14+ peripheral blood-derived monocytes (PBMCs) were purchased from Lonza (Basel, Switzerland). The cells were cultured in the Roswell Park Memorial Institute 1,640 medium (Nacalai Tesque, Kyoto, Japan) supplemented with 10% heat-inactivated fetal bovine serum, 2 mM glutamine (Nacalai Tesque), 1% sodium pyruvate (Nacalai Tesque), 1% non-essential amino acids (Nacalai Tesque), and 25 ng/ml M-CSF. Human periodontal ligament (PDL) cells (Lonza) were grown in complete fibroblast medium (FM) using the FibroLife S2 Comp Kit (Kurabo Industries Ltd., Osaka, Japan), and cells at the second to third passages were used for subsequent experiments. The mouse osteoclast precursor clone RAW-D cells, which were derived from RAW264 macrophage-like cell line were kindly gifted by Prof. Toshio Kukita and Prof. Takayoshi Yamaza (Kyushu University, Japan) and cultured as previously described (Watanabe et al., 2004 (link)) (Kukita et al., 2004 (link)). RAW-D cells were stimulated with 50 ng/ml RANKL to differentiate into osteoclasts.
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7

Cell Culture and Transfection Protocol

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HT-1080 cells and HEK293T cells were cultured in Dulbecco’s Modified Eagle’s medium (DMEM) containing 4.5 g/l glucose and 2 mM glutamine (Nacalai tesque) supplemented with 10% fetal bovine serum (FBS; Life Technologies) and 1% Penicillin/Streptomycin (Nacalai tesque), and grown under a 5% CO2 atmosphere at 37 °C. Cells were transfected with plasmid DNAs using Lipofectamine 2000 (Life Technologies) or Polyethylenimine Max (COSMO Bio) or with siRNAs using Lipofectamine 2000 or Lipofectamine RNAi Max (Life Technologies) according to the manufacturers’ instructions.
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8

COS-7 Cell Culture and Transfection

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The African green monkey kidney fibroblast cell line COS-7 was obtained from RIKEN BRC Cell Bank (Tsukuba) and cultured in Dulbecco's modified Eagle's medium supplemented with 10% fetal bovine serum, 100 units/ml penicillin, 100 μg/ml streptomycin, and 2 mM glutamine (Nacalai Tesque). For plasmid transfection, Lipofectamine 2000 (Life Technologies) was used for biochemical analysis and Fugene HD (Promega) was used for immunocytochemical analysis as previously described [24 (link)–27 (link)].
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9

Cell Culture of Melanoma and Kidney Cell Lines

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The B16-F0 mouse melanoma cell line (cat. no. JCRB0202) was purchased from Japanese Collection of Research Bioresources (JCRB) Cell Bank and maintained in Eagle's Minimum Essential Medium (EMEM; FUJIFILM Wako Pure Chemical Corporation) supplemented with 10% fetal bovine serum (FBS; Sigma-Aldrich; Merck KGaA), 100 U/ml penicillin and 100 µg/ml streptomycin (both from Nacalai Tesque, Inc.) under mycoplasma-free conditions. Clone M3 (Cloudman S91) melanoma cell line was obtained from European Collection of Authenticated Cell Cultures (ECACC) and cultured in Ham's F10 medium (FUJIFILM Wako Pure Chemical Corporation) supplemented with 15% FBS, 2 mM glutamine (Nacalai Tesque, Inc.), 100 U/ml penicillin and 100 µg/ml streptomycin. 293T and 293FT cells were obtained from Invitrogen; Thermo Fisher Scientific, Inc. HEK-Blue™ TGF-β cells were purchased from InvivoGen. 293T, 293FT and HEK-Blue™ TGF-β cells were cultured in Dulbecco's modified Eagle's medium (DMEM; Nacalai Tesque, Inc.) supplemented with 10% FBS, 100 U/ml penicillin and 100 µg/ml streptomycin. The cultured medium for 293FT cells was also supplemented with 1% non-essential amino acid solution (Nacalai Tesque, Inc.). All cell lines were cultured in a humidified incubator containing 5% CO2 at 37°C.
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10

Culturing Normal Human Dermal Fibroblasts

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Normal human dermal fibroblast (NHDF) was purchased from Lonza Co. Ltd. (Tokyo, Japan). Fibroblasts were grown in Dulbecco’s modified Eagle’s medium (DMEM, Nacalai Tesque, Kyoto, Japan) supplemented with 2% fetal bovine serum (FBS; MP Biomedicals, Illkirch, France), 2 mM glutamine, 100 units/ml penicillin and 100 mg/ml streptomycin (Nacalai Tesque). The cells were incubated under 37°C in a humidified atmosphere of 5% CO2 and 95% air in a CO2 incubator. After 24 h, culture medium was replaced by the DMEM containing 2% FBS and P40, and the cells were subsequently pre-cultured for 1 week in the CO2 incubator until the experiments.
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