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22 protocols using bca kit

1

Sertoli Cell miR-100-3p Regulation

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Human Sertoli cells were transfected with miR-100-3p mimics, miRNA mimics control, miR-100-3p inhibitor, miRNA inhibitor control, SGK3 siRNAs, or the control siRNA, and the RIPA buffer (Beyotime Biotechnology, China) was used for protein extraction from these cells. Centrifugation of cell lysates was performed at 12,000 × g for 20 min, while the protein concentrations were determined by bicinchoninic acid (BCA) kit (Dingguo, China). Thirty micrograms of cell lysate were employed for Western blots using the antibodies (Supplementary Table 2) in terms of the method (He et al., 2007 (link)), while the blots were detected with chemiluminescence (SageCreation, China).
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2

Western Blot Analysis of Protein Expression

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Western blot analysis was performed as described previously (Ma et al., 2022 (link)). Both tissues and cells were lysed in RIPA buffer (Beyotime, P0013B) that had been supplemented with protease inhibitors (Roche, 4693159001). After sufficient lysis, the mixture was centrifuged. The supernatant was left for quantification with a BCA kit (Dingguo biotechnology, BCA02). SDS-PAGE electrophoresis and semi-dry membrane transfer were then performed sequentially. PVDF membranes (Merck Millpore) were blocked with 5% skim milk for 1 h at RT and then incubated with primary antibody overnight at 4°C. The next day, PVDF membranes were washed with TBST buffer and incubated HRP-conjugated secondary antibodies for 1 h at RT depending on the source of the primary antibody. Data were obtained using the ChemiDoc XRS+ system (Bio-Rad Laboratories). The band intensities were quantified using Image J. Antibodies used for western blot analysis in this study are as follows: anti-GAPDH (Santa Cruz, sc-365062, 1:3,000), anti-SREBP2 (ImmunoWay, YN0037, 1:1000), anti-SREBP2 (Abcam, ab30682, 1:1000), anti-CYP1A2 (Santa Cruz, sc-53614, 1:1000), goat anti-Rabbit IgG (ZSGB-bio, ZB-2307, 1:5,000), goat anti-Mouse IgG (ZSGB-bio, ZB-2305, 1:500).
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3

Insulin-Stimulated Akt Activation Assay

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After 16 weeks of HFD, Mice were fasted for 6 h and then intraperitoneally administered with PBS or insulin (4 U/Kg). Mice subsequently were euthanized 15 min later, and eWAT, liver, skeletal muscle were collected, frozen in liquid nitrogen immediately, and stored at −80°C. Total protein was isolated by RIPA buffer (Beyotime, Shanghai, China) containing protease (Roche, Basel, Switzerland) and phosphatase inhibitors (Roche, Basel, Switzerland). Protein concentration was measured with a BCA kit (Dingguochangsheng, Beijing, China) and the same amount of total protein was loaded onto polyacrylamide gels. Proteins were isolated and then transferred to PVDF membranes. Membranes were blocked for 1 h in 5% BSA at room temperature. The membranes were first incubated with following anti-phosphotyrosine AKT Ser473 (1:1000, Cat#4060, Cell Signaling Technology, USA) antibody at 4°C overnight. The membranes were subsequently stripped using solution containing 62.5 mM Tris-HCl, 2%SDS, 100 mM b-mercaptoethanol at 55°C for 25 min and reincubated with anti-AKT (1:1000, Cat#9272, Cell Signaling Technology, USA) antibody at 4°C overnight. Integrated density was analyzed with Image J Software.
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4

Resveratrol Modulates Inflammatory Markers

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Resveratrol (R5010) was purchased from Sigma (USA). The BCA kit was bought from Beijing Dingguo Changsheng Biotechnology Co., Ltd. (China). DAB color development solution, HRP-labeled goat anti-mouse IgG and goat anti-rabbit IgG antibodies were obtained from Wuhan Boster Biological Technology Co., Ltd. (China). Rat TNF-α, IL-6, IL-10 and IL-1β detection kits were provided by Hangzhou Lianhe Biotechnology Co., Ltd. (China). Rabbit anti-GRP78/BiP polyclonal antibody (ADI-SPA-826) was supplied by Stressgen (USA). Rabbit anti-IRE1 (ab48187) and anti-p65 polyclonal antibodies (ab7970) were bought from Abcam (USA).
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5

Western Blot Analysis of miRNA and siRNA Targets

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After transfection with miRNAs and/or siRNAs, the human SSC line was lysed with radioimmunoprecipitation assay (RIPA) buffer (Dingguo, Beijing, China) on ice for about 30 min. The proteins of cells were obtained by centrifugation at 12,000 × g for 15 min, and the concentration of proteins was measured by a bicinchoninic acid (BCA) kit (Dingguo). Total protein extracts (30 μg) were separated on 8%–12% Bis-Tris gels and followed by transferring onto polyvinylidene fluoride membranes. After blocking with 5% skimmed milk for 2 h at room temperature, the blots were incubated with a primary antibody overnight at 4°C and then with horseradish peroxidase-conjugated secondary antibody for 1 h. The primary antibodies included PCNA (Cell Signaling Technology, MA, USA; 2586, 1:2,000), KLF2 (Abcam; ab203591, 1:1,000), and ACTB (Proteintech, Chicago, IL, USA; 60008, 1:2,000). ACTB was used as a loading control of protein. The intensities of protein bands were visualized using chemiluminescence (Bio-Rad, GE Healthcare, CA, USA).
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6

Protein Extraction and Western Blotting

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RIPA lysis buffer (Beyotime, Shanghai, China) supplemented with 1% phenylmethylsulfonyl fluoride (PMSF, Dingguo, Beijing, China) was used for protein extraction of cells and tissues. The protein concentration was measured with a BCA kit (Dingguo, Beijing, China) according to the manufacturer’s instructions. Protein samples (40 μg) were separated by 10% sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE) and then transferred to a polyvinylidene difluoride (PVDF) membrane. The membrane was blocked with TBST containing 5% skimmed milk at room temperature for 1.5 hours and incubated with specific primary antibody diluted with 5% BSA at 4°C overnight. After incubation with secondary antibody for 2 hours at room temperature, the protein signals were detected using a ECL chemiluminescence kit (Advansta, San Jose, CA, USA). Immunoprecipitation was performed as previously described (34 (link)). Grayscale value analysis of all protein bands was performed via ImageJ 1.46r software (NIH, Bethesda, MD, USA).
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7

Western Blot Analysis of Apoptosis Markers

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Cells were homogenated in RIPA (Santa Cruz Technology, Santa Cruz, CA, USA). After centrifugation at 12,000× g for 20 min at 4 °C, protein concentrations in the supernatants were measured by a BCA kit (Dingguo, Changchun, China). Denatured proteins were separated on 10%–12% SDS-PAGE gels and transferred to 0.2 μm nitrocellulose membrane. Blocking in TBS containing 5% non-fat milk and 0.5% BSA for 1 h at room temperature was followed by incubation with primary antibodies against Bcl-2 (Santa Cruz Biotechnology), Bax (Santa Cruz Biotechnology), cleaved caspase-3 (Abcam, Cambridge, UK), or p21 (Abcam) overnight at 4 °C, and then with a secondary antibody for 1 h at room temperature. Signals were revealed using an ECL kit (Bio-Rad Laboratories).
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8

Exosome Isolation and Characterization Protocol

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HT-29 and H1299 cells were grown in their respective media supplemented with 10% exosome-free FBS, in which the exosomes were removed from the FBS by ultracentrifugation. The culture medium was centrifuged at 2000 g for 20 min and filtered through a 0.22 μm filter to remove cell debris. Thereafter, the exosomes were extracted from the filtered media using the Total Exosome Isolation Reagent (Cat. 4478359, Thermo Fisher Scientific), according to the manufacturer’s instructions. The harvested pellet was then lysed using IP lysis buffer, and the protein quantity in the exosomes was measured using a bicinchoninic acid assay (BCA) kit (Dingguo, Guangzhou, China).
Ultracentrifugation was conducted as follows: the filtered medium was first centrifuged at 100,000 g for 80 min at 4 °C in an ultracentrifuge. Thereafter, the pellet was resuspended in PBS and centrifuged again for 80 min at 4 °C. After centrifugation, the pellet was dissolved in cold PBS and the protein concentration was quantity using the BCA kit. The exosome samples were stored at −80 °C. CD63, CD9, CD81, Alix, and TSG101 (Proteintech, Wuhan, China) were considered as the positive markers, while Calnexin (sigma) was considered as a negative marker for exosomes for the WB analysis. Furthermore, the isolated exosomes were subjected to NTA analysis and observed under TEM (APTBIO, Shanghai, China).
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9

Immunoblotting Protocol for Protein Analysis

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Immunoblotting was performed as described previously32 (link). Briefly, total protein lysates were prepared using a radio-immunoprecipitation assay (RIPA; Beijing Dingguo Changsheng Biotechnology, Beijing, China) lysis buffer supplemented with the protease inhibitor phenylmethanesulfonyl fluoride (PMSF; Beijing Dingguo Changsheng Biotechnology, Beijing, China). Protein concentrations were determined using a BCA kit (Beijing Dingguo Changsheng Biotechnology, Beijing, China). Proteins were separated on SDS-PAGE gels, and transferred onto polyvinylidene difluoride (PVDF) membranes (Bio-Rad, USA). Then, the membranes were probed overnight at 4°C with the following primary antibodies: KCTD-12, CD271, E-cadherin, N-cadherin and β-actin. Next, the membranes were washed with Tris Buffered Saline Tween (TBST), and incubated with the appropriate horseradish peroxidase-conjugated secondary antibodies (Beijing Dingguo Changsheng Biotechnology, Beijing, China). Protein bands were visualized with hypersensitive chemiluminescence kit (Wanleibio, Shenyang, China). Immunodetection was accomplished using the ChemiDoc XRS system (Bio-Rad, USA). Finally, densitometric analyses were performed using ImageLab software (Bio-Rad, USA).
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10

Engineered Bacterial PETase Enzyme

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E. coli JM109 served as the host strain for site-specific mutagenesis. E. coli Rosetta gami-B (DE3) (Weidi Biotech, Shanghai, China) was used to express various mutant enzymes. The gene for BbPETaseCD was synthesized by Genewiz (Suzhou, China) and using pET-22b(+) plasmid as gene vector. DNA sequencing was performed by Genewiz (Suzhou, China). 5 mL His TrapTM FF affinity chromatography column was purchased from GE Healthcare (9 × 15.7 mm, 90 μm, Marlborough, MA, USA). Fast pfu enzyme and DpnI enzyme were purchased from TransGen Biotech (Beijing, China). A plasmid extraction kit was purchased from Beyotime (Shanghai, China). A BCA kit was purchased from Dingguo Biotech (Tianjin, China). A sulfhydryl assay kit was purchased from Bestbio (Shanghai, China). The crystallinity of PET films was measured using DSC by Standard (Qingdao, China). Other reagents were purchased from Sangon Biotech (Shanghai, China), Heowns (Tianjin, China), or Meryer (Shanghai, China).
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