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Dmrb fluorescence microscope

Manufactured by Leica
Sourced in Germany, United Kingdom

The DMRB fluorescence microscope is a high-performance research-grade microscope designed for advanced fluorescence imaging applications. It is equipped with a fluorescence illumination system and a range of optical components that enable the visualization and analysis of fluorescently labeled samples.

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39 protocols using dmrb fluorescence microscope

1

Tet-inducible Lentiviral Knockdown of HK2

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Lentiviral pTRIPz vectors encoding Tet-inducible sh-HK2 (RHS4696) and nonsilencing control (RHS4743) were purchased from Open Biosystems (Thermo Fisher Scientific, Inc., Carlsbad, CA, USA). These plasmids contain RFP cassette downstream of the Tet/ON promoter.
To produce the infectious viruses, 293T packaging cell line was co-transfected using calcium phosphate with the following retroviral backbone plasmids: the TRIPz-RFP/sh-HK2 vectors (a pool of three siRNA sequences), the packaging plasmid pCMVΔ8.2 and the envelope plasmid pVSV-G.
After 48 h of incubation, the virus particles in the medium were collected and filtrated (0.45 μm filter). Neuroblastoma lung metastatic cells were plated (2 × 106) 24 h before infection. The cells were infected in the presence of 1 μg ml−1 Polybrene overnight and the virus-containing medium was replaced with fresh medium. After 72 h, 1 μg ml−1 Puromycin (InvivoGen, San Diego, CA, USA) was added for 7 days in order to stably select infected cell population. After selection, Puromycin was regularly added to the cultures.
The Tet-On mode of sh-HK2 infected cells was activated by the addition of 1 μg ml−1 Doxycycline (Sigma-Aldrich). Efficiency of infection was examined by visualising RFP in Leica DMRB Fluorescence Microscope (Leica Biosystems, Nussloch GmbH, Germany). Efficacy of sh-HK2 inhibition was verified by western blotting.
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2

Immunofluorescence Analysis of Cell Markers

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Cell monolayers on glass coverslips, were fixed with 4% paraformaldehyde (PFA) and washed with PBS. Fixed cells were permeabilized with 0.3% Triton X–100 (Sigma, Dorset, UK) and incubated with anti‐α‐smooth muscle actin (α‐SMA; 1:100; Sigma), anti‐vimentin (1:900) or anti‐CD31 (1:900) (Abcam, Cambridge, UK) overnight at 4°C. After washing, cells were incubated with Alexa Fluor® 488 donkey‐anti‐rabbit antibody or Alexa Fluor® 594 goat‐anti‐mouse antibody (1:250; ThermoFisher Scientific, Northumberland, UK) for 1 hr in the dark. Glass coverslips were mounted onto slides with Prolong Gold Anti‐Fade Reagent contained DAPI (Life Technologies). Fluorescence signal was detected under a Leica DMRB fluorescence microscope (Leica Biosystems, Milton Keynes, UK). Control sections were incubated with non‐immune mouse or/and rabbit IgG (Sigma) (2 μg IgG/ml) in place of the primary antibody.
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3

Immunofluorescence Staining of Tissue Samples

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Immunofluorescence staining was performed on 6-µm-thick frozen or paraffin-embedded tissue sections, as previously described (31 (link)). The following antibodies were used: Mouse monoclonal antibodies against TGF-β2 (#ab36495), vimentin (#ab8059) and 5-methylcytosine (#ab10805) (all from Abcam), and rabbit monoclonal antibodies against E-cadherin (#3195s; Cell Signaling Technology, Inc.) and Ki-67 (#ab92742; Abcam). Primary antibodies were diluted 1:50 and secondary antibodies 1:400; the incubations were all performed at room temperature. Signals were detected with a Leica DMRB fluorescence microscope (Leica Microsystems Ltd., Milton Keynes, UK). Images of representative fields were captured using a SPOTTM FLEX 15.2 64-Mp shifting pixel digital color camera and analyzed with SPOT Basic/Advanced 4.6 software (both from Diagnostic Instruments, Sterling Heights, Michigan, USA).
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4

Caveolin-1 and SK3 Dual Staining

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HCT-116 cells were fixed and permeabilized by methanol. Double staining was performed by incubation first with caveolin-1, and then with SK3 antibody (Anti-SK3-ATTO-594, Alomone Lab). Fluorescent images were captured with a JAI camera (model CV-M4+CL), with the use of an automated filter wheel coupled to a Leica DMRB fluorescence microscope (Leica Microsystems).
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5

Immunocytochemistry of CaV1.3 Channels

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HCT116 cell line were plated overnight on glasses and subsequently fixed (PBS 1X PFA 4%), permeabilized (Triton × 100 0.1%), blocked (BSA 5%) and incubated with primary rabbit anti-CaV1.3 (extracellular) antibody (ACC-311, Alomone, 1/200) for 1 h at 4 °C. Glasses are washed (3x) and incubated with a secondary AlexaFluor 488-conjugated anti-rabbit (green color, Invitrogen, Carlsbad, NM, USA, dilution 1/400). Control experiments were performed using only secondary AlexaFluor 488-conjugated anti-rabbit. Acquisitions were performed with a JAI camera (model CV-M4 + CL), with the use of an automated filter wheel coupled to a Leica DMRB fluorescence microscope (Leica Microsystems). Analyses were performed using ImageJ software (NIH, Bethesda, MA, USA).
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6

FISH Validation of Stable PEF Cells

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To verify the status of vectors within the selected stable PEF cells, FISH was performed as described previously at 20 generation post-transfection [13]. eGFP probe was labeled using a digoxigenin-nick translation kit (Roche, Mannheim, Germany). The samples were counterstained with 1 μg/mL of 4',6'-diamidino-2-phenylindole and further analyzed using a Leica DMRB fluorescence microscope (Leica Microsystems, Wetzlar, Germany). Approximately 10 fields were observed.
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7

Fluorescence Imaging of Plant Tissue Sections

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XZ-planar mid-sections of ∼0.2–0.5 mm thickness were manually prepared using a razor blade, transferred to microscope slides and moistened with ∼5 μL of PBS immediately before imaging. Fluorescence microscopy was performed using a Leica DMRB fluorescence microscope (Leica Microsystems, Wetzlar, Germany) with a 10 × high-contrast flat-field ocular and 1.6 × air objective (numerical aperture 0.05), and excitation and emission wavelengths of 530 nm and 590 nm, respectively. The exposure time was 1.0 s for white light and 0.53 s for fluorescence imaging. The gain factor was set to 2.1 in all cases. For illustration purposes, a red channel filter mask was applied to fluorescence images and selected areas were superimposed on white-light images using Photoshop CS5 (Adobe, San Jose, CA, United States).
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8

Cellular Morphology Characterization in Sponges

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The cells encapsulated into the different sponges were kept in complete proliferation medium for 1, 4, and 7 days. The sponges were washed thoroughly with DPBS after each time point and fixed in 4% paraformaldehyde for 15 min.
For phalloidin staining, the fixed samples, permeabilized with 0.2% Triton X-100 detergent for 3 min, were incubated for 1h with Alexa Fluor® 647-conjugated phalloidin (1/1000) for Factin labelling and with DAPI (1/5000) for nuclear staining. The images were collected using LSM710 Laser Scanning Confocal Microscope (Carl Zeiss Canada) and image analysis was performed using Imaris 8.3 Software (Bitplane, Oxford Instrument).
For DAPI staining of frozen sections, the fixed samples were immersed in a Section Compound:30%wt/v sucrose (2:1) solution and then placed in liquid nitrogen until the formation of solid blocks. Frozen sections were cut with a Bright OTF Cryostat microtome (Bright Instruments, 10-µm thickness, 5° angle) and fixed on slides. Cover glasses were prepared with a DAPI-containing mounting medium and the slides were observed with a Leica DMRB fluorescence microscope (Leica Microsystems) to determine the cell distribution homogeneity.
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9

In vivo Imaging of Rheumatoid Arthritis

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For in vivo imaging, 6S-ICG conjugates were injected once in sterile PBS at a dose of 2 mg kg À1 intravenously (i.v.) via the tail vein 14 days after inducing RA. Images were taken over 24 h after administration of the dye conjugate. For histological recovery, the rats additionally received the respective ICC-conjugate once i.v. at a dose of 1 mg kg À1 . Fluorescence histology was performed ex vivo on cryo sections (5 mm) of tibiotarsal articulations. For this purpose, the entire feet were removed 3 h p.i., toes were cut off, and cryo sections along the longitudinal-sagittal plane of the respective joint were prepared, which were put on cellotape, and fixed with acetone for 10 min. Remaining probes were stored at À80 1C in TissueTek until further usage (see SEM and CLSM imaging). Histology images were taken with a Leica DMRB fluorescence microscope (Leica Microsystems, Wetzlar, Germany) equipped with a Spot digital camera and a Spot 32 v2.1 software (Diagnostic Instruments, Sterling Heights, MI) using the 550 nm channel for excitation. Cell nuclei were stained with DAPI.
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10

Immunostaining of Xenograft Samples

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Paraffin-embedded 6-μm xenograft sections or spheroids fixed in 4% PFA and centrifuged in suspension onto slides in a CytoSpin 4 cytocentrifuge (Thermo Scientific, Schwerte, Germany) were stained as previously described [26 (link)]. Samples were stored at −20°C prior to further analysis. The primary antibodies were rabbit polyclonal antibodies against human c-Met (Enzo Life Science, Lörrach, Germany), cytokeratin 19, Ki67 (both from Abcam, Cambridge, UK), and the cleaved fragment of active human caspase-3 (R&D Systems, Abingdon, UK) and mouse monoclonal antibodies against human CD24 (SW11 hybridoma, kindly provided by Dr. P. Altevogt) and adenovirus-capsid (Merck Millipore, Darmstadt, Germany). Biotinylated goat anti-rabbit or anti-mouse IgG (Vector Laboratories, Peterborough, UK) was used as the secondary antibody for immunohistochemistry. The primary antibodies were omitted in the negative control. Goat anti-mouse Alexa Fluor 488 IgG and goat anti-rabbit Alexa Fluor 594 (Molecular Probes, Karlsruhe, Germany) were used as the secondary antibodies for immunofluorescence staining. The signals were detected with a Leica DMRB fluorescence microscope (Leica, Wetzlar; Germany). Images of representative fields were captured with a SPOT™ FLEX 15.2 64 Mp shifting pixel digital color camera (Diagnostic Instruments, Inc. USA) and analyzed with SPOT Basic/Advanced 4.6 software.
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