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Tirf system

Manufactured by Nikon
Sourced in United Kingdom

The TIRF (Total Internal Reflection Fluorescence) system is a specialized lab equipment designed for high-resolution fluorescence imaging. It utilizes the principle of total internal reflection to selectively excite fluorophores near the surface of a sample, enabling the visualization of processes occurring at the cellular or molecular level.

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7 protocols using tirf system

1

Cell Spreading Assay with Imaging

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In the cell-spreading assay, cells were transfected with respective plasmids 36 to 48 hours before experiments using Neon transfection system (Thermo Fisher Scientific) or JetOptimus chemical transfection reagent (PolyPlus) following the manufacturer’s recommendations. On the day of experiment, the cells were detached using an enzyme-free cell-detaching buffer [cell dissociation buffer, enzyme-free, phosphate-buffered saline (PBS), Gibco], spun down, and resuspended in complete medium (1× DMEM and 10% FBS). The suspended cells were allowed to recover by incubating in the cell culture hood for 20 min and then seeded onto glass-bottom petri dishes coated with fibronectin (10 μg/ml), for 1 hour]. Imaging was done on a Nikon TIRF system with 405, 488, 561, and 640 laser lines. The cell spreading area and adhesion size were analyzed automatically using CellProfiler (77 (link)).
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2

Platelet Adhesion to Collagen Substrate

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Adhesion of Alexa Fluor 488–204‐11 Fab‐labeled washed platelets (3 × 107 platelets mL−1 in HT containing 2 mm MgCl2) to immobilized collagenous substrate was imaged with TIRFM (Nikon TIRF system mounted on a Nikon Eclipse Ti inverted microscope, with a Nikon × 60 numerical aperture [NA] 1.49 TIRF objective; Nikon UK, Ltd., Surrey, UK). Images were obtained at 5‐s intervals for 20–30 min at 37 °C, and this was followed by fixation in formalin and confocal imaging. Integrin α2β1 blockade was achieved by preincubating platelets with 10 μg mL−1 Gi9 blocking antibody. Platelet morphology was followed with differential interference contrast (DIC) microscopy.
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3

Multicolor TIRF Microscopy Protocol

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Imaging was performed at 24 ± 1°C. The majority of data were acquired on a TIRF microscope system (Nikon (Amsterdam, Netherlands)) controlled with Micro-Manager software (Edelstein et al., 2010 (link); Edelstein et al., 2014 (link); RRID:SCR_000415). The microscope was equipped with a 100× objective (Nikon, 1.49 NA Oil, APO TIRF) and the following lasers: 150 mW 488 nm, 150 mW 561 nm laser (both Coherent Sapphire (Coherent Inc. (Santa Clara, CA)), and 100 mW 641 nm (Coherent CUBE (Coherent Inc.)). Images were acquired with an EMCCD camera (iXonEM+ DU-897E, Andor (Belfast, UK)). For multicolour experiments, images were captured sequentially by switching emission filters between GFP, Cy3, and Cy5 (Chroma Technology Corp. (Bellows Falls, VT)). The size of each pixel was 105 nm × 105 nm. The data in Figure 3, Figure 3—figure supplement 1 and Figure 6—figure supplement 2B were collected with a Nikon TIRF system controlled with Nikon Elements v4.3. The microscope was equipped with the same type of 100x objective and camera as described above. 80 mW 488 nm and 125 mW 647 nm lasers (Agilent (Santa Clara, CA)) and ET525/50m and ET705/72m emission filters (Chroma Technology Corp.) were used. The size of each pixel was 160 nm × 160 nm.
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4

Live-cell TIRF Imaging of Yeast and Protoplasts

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Yeast cells were imaged with a 60x TIRF objective (Nikon, MRD01691) on a Nikon TI-E equipped with a Nikon TIRF system and a SCMOS camera (Andor, Ixon Ultra 888). Protoplasts were imaged on a Nikon TI-2 equipped with a Diskovery Multi-modal imaging system from Andor and a SCMOS camera (Andor, Ixon Ultra 888) using a 60x TIRF objective (Nikon, MRD01691). Cells were imaged at 100 Hz, in TIRF, for 10 s with a 488 nm excitation laser.
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5

VAMP2-pHluorin Fusion Kinetics in INS-1 Cells

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VAMP2-pHluorin45 (link) was transfected into INS-1 cells after siRNA knockdown treatment. Twenty four h later, cells were subjected to TIRF live cell imaging to quantify fusion events as described.46 (link) On the day of the live cell imaging experiment, cells were preincubated with KRBH buffer containing 2 mM glucose in an incubator and then placed in a metal chamber mounted on a heated stage and kept at 37°C throughout the imaging experiments. Time lapse images were acquired by a Nikon TIRF system equipped with the PerfectFocus stability mechanism at 100 ms exposure and readout rate 540 MHz from an Andor Zyla 4.2 Megapixel sCMOS camera. To analyze fusion events, background normalized image sequences were first processed by Trackmate plugin in Fiji-ImageJ.47 (link) The statistics of all identified spots were extracted. The data were then calculated by custom script in Python to generate time series intensity curves for each spot track including the preceding and following frames. The spot tracks were finally compiled for visualization within Fiji-Image J for manual confirmation. Individual fusion events were defined by the rapid appearance and disappearance of VAMP2-pHluorin fluoresence labeled vesicles. Kinetics of fusion decay curve for identified fusion events were extracted and normalized by the peak signal.
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6

Quantifying Insulin Granules and Cortical F-actin in Islet Cells

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For measurement of docked insulin granules, dispersed islet cells from control or APT1 global deficient mice were fixed with 4% paraformaldehyde for 10 min, then monolayer cells were permeabilised using 0.1% Triton-X 100, and blocked with 5% goat serum in PBS at room temperature for 1 h. Then cells were stained for insulin (guinea pig polyclonal antibody from Abcam, Cat. No. ab7842) overnight at 4°C. TIRF images were then acquired by a Nikon TIRF system in the Cell and Tissue Imaging Core of the Washington Univesity Diabetes Research Center and granule density was counted by Fiji-ImageJ. For the assessment of cortical F-actin, Alexa Fluor 594 conjugated phalloidin (Thermofisher, Cat. No. A12381) was used to stain dispersed islet cells and images were acquired by a Nikon A1plus laser scan confocal microscope. Cell borders were delineated and fluoresence intensity of F-actin was quantitated after subtraction of background (Fiji-ImageJ).
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7

Visualizing Insulin and Scamp1 in Islets

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For mouse islets, dispersed islet cells from control mice were fixed and stained for insulin and Scamp1 (Thermofisher, Cat. No. PA1-739) as described above. For INS-1 cells, the cells were co-transfected with GFP-Scamp1 and mCherry-NPY (Addgene, Cat. No. 67156). TIRF images were acquired by a Nikon TIRF system as described above.
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