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5 protocols using 8 hydroxy 2 deoxyguanosine 8 ohdg

1

Synthesis of Nitrogen-Doped Graphene

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Potassium ferrocyanide-K4[Fe(CN)6] and potassium chloride (KCl) were purchased from Merck (Germany). N,N-dimethylformamide (DMF) was bought from Sigma-Aldrich (Germany). 8-hydroxy-2’-deoxyguanosine (8-OHdG) was purchased from the Cayman Chemical Company. For the synthesis of nitrogen-doped graphene the following chemicals were used: graphene oxide, prepared using a modified Hummers method as previously reported [42 (link)], and urea (Alfa-Aesar, Germany).
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2

Electrochemical Exfoliation of Graphite

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8-hydroxy-2′-deoxyguanosine (8-OHdG) was purchased from Cayman Chemical Company. Boric acid (H3BO3), sodium chloride (NaCl), monobasic sodium phosphate (NaH2PO4), and dibasic sodium phosphate (Na2HPO4) were bought from REACTIVUL Bucuresti (Bucharest, Romania). Potassium ferrocyanide K4[Fe(CN)6] and KCl were purchased from Merck. Dimethylformamide (DMF) was purchased from JTBaker (HPLC grade). High-purity (99.9995%) graphite rods were employed for electrochemical exfoliation and were bought from Alfa-Aesar (Kandel, Germany).
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3

Oxidative Stress Biomarker Quantification

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Drugs and reagents were obtained from the following sources: 3-(3-carbamoylphenyl)phenyl N-cyclohexylcarbamate (URB597), 4-hyroxynonenal (4-HNE), 8-iso Prostaglandin F-d4 (8-isoPGF2α–d4), 8-iso Prostaglandin F (8-isoPGF2α) and 8-hydroxy-2′-deoxyguanosine (8-OHdG) from Cayman Chemical Company (Ann Arbor, MI, USA); 11-deoxycorticosterone acetate (DOCA), dimethyl sulfoxide (DMSO), N,N-dimethylformamide (DMF), β-Nicotinamide adenine dinucleotide 2′-phosphate reduced tetrasodium salt hydrate (NADPH), xanthine, xanthine oxidase (XO), 9,9′-Bis(N-methylacridinium nitrate) (lucigenin), superoxide dismutase (SOD), catalase (CAT) thioredoxin (Trx), l-ascrobic acid, retinol, l-glutathione reduced (GSH), l-glutathione oxidized (GSSG), benzaldehyde-d6 and Tween 80 were acquired from Sigma-Aldrich (Steinheim, Germany); pentobarbital sodium was purchased from Biowet (Puławy, Poland); chloro-2,4-dinitro benzene (CDNB), butylated hydroxytoluene (BHT), and 5,5′-dithiobis (2-dinitrobenzoic acid) (DTNB) were acquired from Sigma-Aldrich (Steinheim, Germany). DOCA was dissolved in DMF, whereas URB597 was dissolved in an URB597 solvent: a mixture of DMSO, Tween 80, and saline (0.9% NaCl) [1:2:7; v/v/v].
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4

Urinary 8-isoprostane and 8-OH-dG Analysis

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Pooled urine from male and female animals of randomly selected litters (3 from each exposure group) was analyzed for 8-isoprostane levels. Urinary 8-isoprostane was measured according to the manufacturer’s protocol (8-isoprostane ELISA kit, Detroit R&D). A DNA/RNA Oxidative Damage EIA kit was used to measure the DNA oxidation by-product 8-hydroxy-2-deoxyguanosine (8-OH-dG) (Cayman Chemical) in the same liver samples used for the mRNA analysis. The competitive immunoassay involves the binding of free 8-OH-dG to an antibody coated 96-well plate. The assay and sample concentration of 8-OH-dG was carried out as per the manufacturer’s instructions.
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5

Serum Biomarker Measurement Protocol

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Blood samples from a forearm vein were drawn with the subjects in a fasting state (i.e., fasting for at least 8 hours prior). The serum samples were immediately separated by centrifugation at 3000 g for 10 minutes and were stored at –80°C for further analysis, based on a previous study on antioxidative biomarkers.14 (link) Commercially available assay kits were used to perform the assay for 8-hydroxy-2′-deoxyguanosine (8-OHdG), thiobarbituric acid reactive substances, and high sensitivity C-reactive protein (Cayman Chemical Co., Ann Arbor, MI, USA). All analyses were performed at the same laboratory (GC LabCell, Yongin, Korea).
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