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Ultrapure agar

Manufactured by Thermo Fisher Scientific

Ultrapure agar is a high-quality solidifying agent used in the preparation of microbiological culture media. It is produced through a specialized purification process to ensure minimal impurities and consistent performance.

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2 protocols using ultrapure agar

1

Quantitative Cell Proliferation and Migration Assays

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For proliferation assays, 24 h after transfection, 0.5X104 cells were plated in 6-well plates in triplicate, and cells were quantified in a cell counter (Nexcelom) at the indicated times. The transwell cell migration assays were performed in duplicate, using 6.5 mm diameter Falcon cell culture inserts (8 mM pore size, Falcon) in 24 well cell culture plates. 1X105 cells in serum-free media were transferred to the upper chamber, while the lower chamber contained media with 10% FBS. Following overnight incubation, the cells remaining on the upper surface were removed with a cotton swab. Migrated cells were fixed, visualized microscopically, photographed, and quantified using Image J. For soft agar assays, 1X105 stably transfected cells were mixed with complete media containing 0.4% of ultrapure agar (Invitrogen) and placed over 0.6% basal agar in 60 mm dishes. 3 to 5 plates per transfectant were used. Cells were grown for 3–4 weeks, and colonies were stained with Nitrotetrazolium Blue Chloride (1 mg/ml), photographed by microscopy, and quantified with a colony counter.
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2

Transwell and Soft Agar Assays for Cell Migration

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The transwell cell migration assay was performed using 6.5 mm diameter Falcon cell culture inserts (8 μM pore size, ThermoFisher) precoated with 0.01% gelatin, in 24 well cell culture plates as described (18 (link)). The collected lysates from stained migrated cells were quantified in a spectrophotometer using OD590nm. For soft agar assay, 1×105 of G418-resistant stable SW620 clones were mixed with complete media containing 0.4% of ultrapure agar (Invitrogen) and placed over 0.6% basal agar in 6cm dishes in triplicate. Cells were fed with fresh media weekly and grown for 3 weeks, and colonies were stained, photographed microscopically and quantified by a colony counter.
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