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6 protocols using robo1

1

Western Blot Analysis of Adherent and 3D Cells

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Protein lysates from adherent cells were prepared by direct lysing into 1× sample buffer and analyzed by Western blot. Lysates from 3D gel systems were made with 12-h incubation of diced gels in 2× RIPA buffer supplemented with 2× protease and phosphatase inhibitor cocktail 2 and 3 (Sigma-Aldrich) at 4°C. Sample buffer (4×) was added to the lysates, and protein analysis was done by Western blot. For phosphor blots, cells were treated 3 h with SLIT2 and the different inhibitors followed by harvest. Phosphospecific primary antibodies pFAK397 (SCBT), ROBO1 (Abcam), and pMRLC19 (Cell Signaling) were prepared in 4% BSA. Antibodies targeting MRLC (SCBT) and FAK (SCBT) were prepared in 5% milk. All proteins were detecting using clarity ECL or FEMTO chemiluminescent substrate (Bio-Rad) on a Bio-Rad ChemiDoc MP Imager and quantified using ImageLab or ImageJ software.
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2

Immunohistochemical Staining of ROBO-1

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4% formaldehyde was used for section fixation, and 1 mM EDTA (pH 8.0) was applied for antigen repair. The sections were incubated with goat serum for 2 h at room temperature, followed by overnight incubation with primary antibody (Abcam, ROBO-1, ab256791) at 4 °C. The sections were then incubated with the secondary antibody and then reacted with diaminobenzidine and counterstained with Mayer hematoxylin.
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3

Characterization of Osteosarcoma Cell Lines

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Human osteoblast hFOB1.19 cells and human osteosarcoma Saos-2 and MNNG-HOS cells were obtained from the Cell Bank of the Chinese Academy of Sciences (Shanghai, China). Human osteosarcoma U-2OS cell line was obtained from the American Type Culture Collection (ATCC, Manassas, VA, USA). Each cell line passed the test of DNA profiling (STR). Mycoplasma contamination testing was performed using Mycoplasma Genus PCR. All cell lines were cultured according to ATCC instructions. Standard culture conditions were used for the human osteosarcoma cells (37 °C in a 5% CO2 atmosphere), while the hFOB1.19 cells were incubated at 34.5 °C in a 5% CO2 atmosphere. Cells were passaged 7–10 times. The antibodies used were ROBO1 (ab7279; Abcam, Cambridge, UK), SLIT2 (ab134166; Abcam), SRC (2109; Cell Signaling Technology, Danvers, MA, USA), p-Src (12432; Cell Signaling Technology), extracellular signal-regulated kinase (ERK, 4695; Cell Signaling Technology), p-ERK (4370; Cell Signaling Technology), c-Myc (ab32072; Abcam), PFKFB2 (17838; Proteintech, Wuhan, China), β-actin (M1210-2; Hua’an Biology, Chuzhou, China), BrdU (66241-1-1g, Proteintech, Wuhan, China), horseradish peroxidase-conjugated anti-rabbit IgG (170-6515; Bio-Rad Laboratories, Hercules, CA, USA), and horseradish peroxidase-conjugated anti-mouse IgG (170-6516, Bio-Rad Laboratories).
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4

Antibody Panel for EMT Markers

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Antibodies against Vimentin, and αSMA were purchased from Sigma-Aldrich. N-cadherin, p44/42 MAPK, Phospho-p44/42 MAPK, EGFR antibodies were from Cell Signaling Technology (Danvers, MA); α-tubulin and ROBO1 from Abcam (Cambridge, MA). Fibronectin, Integrin αV, Integrin α2, Integrin α5, Integrin β1, Integrin β4 (BD Biosciences); MMP14 (Epitomics, Burlingam, CA); Ki67 Vector Laboratories (Burlingame, CA).
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5

ROBO1 Expression Quantification in NPC Tissue

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The paraffin-embedded NPC tissue sections (3 µm) were deparaffinized and
rehydrated based on standard protocols. Immunohistochemical (IHC) staining was
following the primary antibody ROBO1 (1:100; Clone: EPR23699-159, Abcam) at 4°C
for overnight and the secondary antibody at RT for 30 min. The
H-score was used to quantify ROBO1 immunoreactivity and was
determined with the following equation:
H-score = ΣPi (i + 1),
where Pi is the percentage (0%-100%) of stained tumor cells for
each intensity, and i is the intensity (0-3+) of staining. To
split samples into high and low ROBO1 expression groups, the median
H-score was used. Before assessing the staining intensity
and area, the slide used Mayer’s hematoxylin to counterstain.
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6

Immunohistochemical Analysis of Slit2 and Robo1

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Paraffin-embedded rat eyeball tissues were cut at 6 um thickness and de-paraffinized with xylene and a graded series of ethanol solutions. Endogenous peroxidase activity was eliminated by incubating the retinas in 3% hydrogen peroxidase in PBS for 20 min at room temperature. After being washed with PBS, the slides were incubated with 1% bovine serum albumin (BSA) for 1 h to block non-specific labeling, followed respectively in incubation with antibodies against both Slit2 (Millipore, Temecula, CA) and Robo1 (Abcam, Cambridge, UK) at 1:300 dilutions in 0.3% BSA overnight at 4°C. Following incubation with the primary antibody, the slides were washed with PBS three times and incubated for 20 min with biotin- conjugated secondary antibody (Envision-Detection Kit, GK500705, Gene Tech) at room temperature. The slides were then washed three times in PBS, and the antibody complexes were viewed using diaminobenzidine (DAB). Images of slides were captured on an upright Nikon microscope (Eclipse E800) using Spot advanced software (Spot Diagnose Instruments V4.0.1). In each case, preimmune IgG and secondary control incubations were conducted to determine specificity of staining.
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