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6 protocols using s2770

1

Peptide-based Hydrogel Fabrication

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A commercially available peptide preparation in powder form was used as the source of the octapeptide gelator (FEFEFKFK, Phe-Glu-Phe-Glu-Phe-Lys-Phe-Lys). As part of this study we used peptide sourced from Cambridge Research Biochemicals (batch 32597) although we also verified the fabrication method using a second peptide source (Pepceuticals, UK). To form each precursor, a mass of between 7.5 and 18.75 mg peptide preparation was dissolved in 800 μL sterile water (W3500 Sigma), using a 3 min vortex step followed by centrifugation (3 min at 1000 rpm) and a 2 h incubation at 80 °C. After incubation, 0.5 M NaOH (S2770 Sigma) was added incrementally to the gels until optically clear. Gels were vortexed, buffered by addition of 100 μL 10× PBS (70011 Gibco), and incubated at 80 °C overnight. The resulting precursors could be stored at 4 °C until required.
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2

Optimizing Pluripotent Cell Culture

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All pluripotent and reprogramming cell cultures were maintained at 37°C with 5% CO2 and 5% O2. Differentiation cultures were maintained at 5% CO2 and atmospheric (∼21%) O2. E8 medium was made in house as previously described (Burridge et al., 2015 , Chen et al., 2011 (link)). Other medium components tested were human Long R3 IGF1 (Sigma, 91590C), thiazovivin (LC Labs, T-9753), recombinant human TGF-β3 (Cell Guidance Systems, GFH109), sodium bicarbonate (Sigma, S5761), NEAA (Gibco, 11140050), Chemically Defined Lipid Concentrate (Gibco, 11905031), fatty acid-free BSA (GenDEPOT, A0100), and heparin sodium salt (Sigma H3149-250KU). The pH was adjusted with 1 N HCl (Sigma, H9892) or 1 N NaOH (Sigma, S2770) and measured at room temperature and atmospheric CO2 using a SevenCompact pH meter (Mettler Toledo). Osmolarity was adjusted with sodium chloride (Sigma, S5886) or cell culture water (Corning, 25-055-CV) and measured with a Vapro 5600 vapor pressure osmometer (Wescor).
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3

Modulation of Type I Interferon Response by Fatty Acids

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To test the effects of free saturated and unsaturated fatty acids in modulating the type I interferon response, we prepared palmitate-BSA, palmitoleate-BSA, myristate-BSA, and sodium oleate-BSA conjugates. In brief, to prepare the BSA solution, 10% (w/v) fatty acid-free bovine albumin (A9418-5G, MilliporeSigma) was gradually added to ultrapure water at 52°C with gentle agitation until the BSA was fully dissolved. To prepare palmitate, palmitoleate, and myristate, palmitic acids (P0500, Sigma-Aldrich), palmitoleic acids (P9417, Sigma-Aldrich), and myristic acids (M3128, Sigma-Aldrich) were added to 0.1M NaOH (S2770, Sigma-Aldrich) and heated to 70°C until fully dissolved, yielding a concentration of 100 mM. Likewise, sodium oleate (O7501, Sigma-Aldrich) was added to ultrapure water at 55°C to yield a concentration of 100 mM. To conjugate fatty acids to BSA, the 100 mM stocks of palmitate, palmitoleate, myristate, and sodium oleate were added to 10% BSA at a ratio of 1:9 and heated at 55°C for 10 min. After conjugation, both the 10% (w/v) BSA solution and fatty acid-BSA solutions were filter-sterilized using a 0.45 μm PES filter (SLHVR33RS, Fisher Scientific), aliquoted, and stored at −20°C. Before use, solutions were warmed to 37°C. For final use, 200 μM of both fatty acid-BSA conjugates were used.
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4

Fabrication of Collagen-Based Hydrogels

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Type-I collagen (Elastin Products Company, C857, Owensville, MO) was reconstituted in 0.02 M acetic acid at 3.75 mg/mL. CMA was synthesized from the solubilized Type-I collagen in the method outlined in Gaudet et al.35 (link) and was also reconstituted in 0.02 M acetic acid at 3.75 mg/mL. For free-form fabrication, unless otherwise stated, CMA was buffered on ice according to the following formula: 20 μL 1 M HEPES (H3537, Sigma-Aldrich, St. Louis, MO), 134 μL 0.15 N NaOH (S2770, Sigma-Aldrich), 100 μL 10X PBS (P5493, Sigma-Aldrich), 59 μL 1X PBS (860454, Thermo Fisher Scientific, Waltham, MA), 10 μL 10% Irgacure (I2959, a gift from Ciba Specialty Chemicals) solubilized in neat methanol, and 677 μL CMA. Hydrogels were always prepared to a final concentration of 2.5 mg/mL and pH 7 unless otherwise specified. Buffered CMA was plated in 14 mm glass-bottomed MatTek dishes (P35G-0-14-C, MatTek Corporation, Ashland, MA) and self-assembled for one hour (unless otherwise stated) at 37 °C to create CMA hydrogels. All samples exposed to UV were plated in MatTek dishes.
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5

Hydrogel Precursor Synthesis Protocol

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The precursor and gel preparation method was followed as previously published57 . A commercially available peptide preparation in powder form was used as the source of the octapeptide gelator (Pepceuticals UK, FEFEFKFK, Phe-Glu-Phe-Glu-Phe-Lys-Phe-Lys). To form the precursor, a mass of 10 mg peptide preparation was dissolved in 800 μL sterile water (Sigma, W3500), using a 3 min vortex step followed by centrifugation (3 min at 1000 rpm) and a 2 h incubation at 80 °C. After incubation, 0.5 M NaOH (Sigma, S2770) was added incrementally to the gel until optically clear. The gel was vortexed, buffered by addition of 100 μL 10× PBS (Gibco, 70011), and incubated at 80 °C overnight. The resulting precursor could be stored at 4 °C until required.
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6

Octapeptide Hydrogel Precursor Preparation

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The precursor and gel preparation method was followed as previously published 57 (link) . A commercially available peptide preparation in powder form was used as the source of the octapeptide gelator (Pepceuticals UK, FEFEFKFK, Phe-Glu-Phe-Glu-Phe-Lys-Phe-Lys). To form the precursor, a mass of 10 mg peptide preparation was dissolved in 800 μL sterile water (Sigma, W3500), using a 3 min vortex step followed by centrifugation (3 min at 1000 rpm) and a 2 hour incubation at 80 °C. After incubation, 0.5 M NaOH (Sigma, S2770) was added incrementally to the gel until optically clear. The gel was vortexed, buffered by addition of 100 μL 10x PBS (Gibco, 70011), and incubated at 80 °C overnight. The resulting precursor could be stored at 4 °C until required.
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