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4 protocols using anti arf6

1

Extracellular Vesicle Protein Profiling

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Proteins (12 μg) from each group were separated by SDS–polyacrylamide gel electrophoresis and then transferred onto polyvinylidene difluoride (PVDF) membranes. PVDF membranes were blocked for 1 hour at room temperature and then incubated with primary antibody overnight at 4°C. The following antibodies were used for Western blot analysis: anti-CD63 (1:1000; Abcam, ab134045), anti-TSG101 (1:1000; Abcam, ab125011), anti-Alix (1:1000; Abcam, ab186429), anti–Flotillin-2 (1:1000; Abcam, ab181988), anti-ARF6 (1:1000; Abcam, ab13126), anti-APOA1 (1:1000; Abcam, ab52945), anti-APOA2 (1:1000; Abcam, ab92478), anti-APOB (1:1000; Abcam, ab139401), and anti-ALB (1:1000; Abcam, ab207327). Horseradish peroxidase–conjugated goat anti-rabbit and goat anti-mouse antibodies were used to detect the bound primary antibodies. The signals were detected by the enhanced chemiluminescence reagent. Data from the bands were determined through ImageJ software.
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2

Immunohistochemistry Antibody Protocol

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The following commercially available antibodies were used: goat polyclonal anti-EGFP (Rockland), chicken polyclonal anti-EGFP (Aves Labs), rabbit polyclonal anti-RFP (Abcam), mouse monoclonal anti-HA (clone 16B12; Covance), mouse monoclonal anti-GAD67 (clone 1G10.2; Millipore), guinea pig polyclonal anti-VGLUT1 (Millipore), mouse monoclonal anti-gephyrin (clone 3B11; Synaptic Systems), rabbit polyclonal anti-VGAT (Synaptic Systems), rabbit polyclonal anti-GABAARγ2 (Synaptic Systems), mouse monoclonal anti-PSD-95 (clone K28/43; Neuromab), mouse monoclonal anti-gephyrin (clone 3B11; Synaptic Systems), and rabbit polyclonal anti-ARF6 (Abcam). Rabbit polyclonal anti-IQSEC3 (JK079) [29 (link)] and guinea pig polyclonal anti-IQSEC3/SynArfGEF (a gift from Dr. Hiroyuki Sakagami) [35 (link)] antibodies were previously described.
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3

Whole-mount in situ and Immunostaining

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Whole-mount in situ hybridization was performed as previously described [34 (link)]. Whole-mount immunostaining was performed as previously described [35 (link)], using the following antibodies: anti-GFP (1:1000; Aves Labs, Inc., Tigard, OR), anti-Prox1 (1:1000; Millipore, Billerica, MA), mouse monoclonal 2F11 (1:100; Abcam, Cambridge, MA), anti-Abcb11 (1:200; Kamiya Biomedical, Seattle, WA), anti-dsRed (1:200; Clontech, Mountain View, CA), anti-Arf6 (1:400; Abcam, Cambridge, MA), anti-β-catenin (1:200; Sigma-Aldrich, St. Louis, MO) and Alexa Fluor 488-, 568-, and 647-conjugated secondary antibodies (1:500; Life Technologies, Grand Island, NY). Hoechst 33342 (2.5 ng/ml; Sigma-Aldrich, St. Louis, MO) was used for DNA staining.
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4

Protein Expression Analysis in Cells

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Total protein was extracted from collected cells in RIPA buffer (Sigma-Aldrich; Merck KGaA) containing 1 mM PMSF (Sigma-Aldrich; Merck KGaA) and total protein concentration was quantified using a BCA assay (Beyotime Institute of Biotechnology). In total, 20 µg proteins were separated by 10% SDS-PAGE and subsequently transferred onto a PVDF membrane (EMD Millipore), which was blocked with 5% bovine serum albumin (Sigma-Aldrich; Merck KGaA) diluted in TBS-0.1% Tween-20 buffer at room temperature for 2 h. The membranes were then incubated with the following primary antibodies (all 1:1,000) at 4˚C overnight: Anti-ARF6 (Abcam; cat. no. ab226389), anti-Rac1 (Abcam; cat. no. ab155938), anti-Bcl-2 (Abcam; cat. no. ab194583), anti-Bax (Abcam; cat. no. ab263897), anti-Erk1/2 (Abcam; cat. no. ab17942), anti-p-ERK1/2 (Abcam; cat. no. ab214362) and anti-β-actin (Abcam; cat. no. ab213262). Following the primary antibody incubation, the membranes were washed with TBST and incubated with a HRP-conjugated secondary antibody (Abcam; cat. no. ab6721; 1:5,000) at room temperature for 2 h. Protein bands were visualized using SuperSignal™ West Pico PLUS Chemiluminescent Substrate (Thermo Fisher Scientific, Inc.; cat. no. 34080) on a VersaDoc™ gel imaging system (Bio-Rad Laboratories, Inc.). Densitometric analysis was performed using the Image J software (version 1.51; National Institutes of Health).
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