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14 protocols using cd25 apc cy7

1

Adipose Stromal Vascular Fraction Isolation

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Perigonadal VATs were minced and digested with type II collagenase (Sigma). Stromal vascular fraction (SVF) cells were obtained as described by Anderson et al. (18 (link)). After blocking with anti-CD16/32 antibodies (BD Biosciences, San Jose, CA), cells were stained with fluorophore-conjugated antibodies. Allophycocyanin (APC)-Cy7-B220, APC-TCRβ, phycoerythrin (PE)-Cy7-CD8, PerCP-Cy5.5-CD44, Alexa Fluor 488–CD62L, PE-Cy7-CD45.2, BV421-F4/80, APC-Cy7-CD11c, fluorescein isothiocyanate (FITC)-CD11b, PE–Siglec F, APC-CD11c, Pacific Blue–CD3, Pacific Blue–CD8ɑ, Pacific Blue–CD19, FITC-FCεIɑ, FITC–Pan NK, APC-Cy7-CD25, PerCP-Cy5-CD127, PE-IL33R, APC-CD11b, Alexa Fluor 488–CD45.1, and PerCP-Cy5.5-CD86 antibodies were from BioLegend (San Diego, CA). FITC-CD4 and eFluor 605-CD4 antibodies were from BD Biosciences and eBioscience (San Diego, CA), respectively. DAPI (Invitrogen, Carlsbad, CA) or 7-aminoactinomycin D (BioLegend) was added as viability dye. Flow cytometry experiments were performed on the BD LSR II and analyzed using FlowJo software (Tree Star, Ashland, OR).
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2

Isolation and Culture of Murine ILC2s

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Murine ILC2s were isolated from total splenocytes on a FACS Aria II system. Briefly, the murine splenic cell suspension was incubated with FITC-lineage (CD3, CD45R, CD11b, CD19, Ly-G6) (Thermo Fisher Scientific, CA, USA, clone, 17A2, RA3-6B2, M1/70, TER-119, RB6-8C5), PE-CD127 (Biolegend CA, USA, clone, A7R34), and APC-Cy7-CD25 (Biolegend CA, USA, clone, 3C7), and then ILC2s were sorted by flow cytometry. Cells were stimulated with IL-2 (20 ng/ml) (R&D Systems, MN, USA) and IL-33 (10 ng/ml) (R&D Systems, MN, USA) for 72 h before use.
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3

Multiparameter Flow Cytometry Analysis

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Cells from the lungs, tumors, and spleens were pre-incubated with CD16/32 antibody (Fc block; 2.4G2; BD Pharmingen) and stained with fluorochrome-conjugated antibodies from Biolegend: BV605-CD45 (30-F11), AF700-CD3 (17A2), PerCP/Cy5.5-CD4 (GK1.5), APC/Cy7-CD25 (PC61), PB-CD80 (16–10A1), APC-CD86 (GL-1), APC/Cy7-CD11c (N418), BV 650-IA/IE (M5/114.15.2), AF700-CD11b (M1/70), PerCP/Cy5.5-Gr-1 (RB6–8C5), PE-FOXP3 (150D), BV570-Ly6G (1A8), Pe/Cy7-Ly6C (HK1.4) as previously(15 (link)). Data were acquired on BD Fortessa and analyzed with FlowJo software (Tree Star).
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4

Flow Cytometry Analysis of Splenic and Blood Cells

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Flow cytometry analysis was performed using a Guava 8HT (EMD Millipore Corporation, Billerica, MA USA). Splenic and blood cells from control and tolerant mice were collected and labeled with antimouse antibodies (BioLegend, San Diego, CA) for cell surface markers: CD4-PE and CD25- APC/Cy7. After cell membrane permeabilization with saponin, cells were intracellular labeled with antimouse antibodies: FOXP3-PE/Cy7, IL-17a- APC and IL-6-FITC (BioLegend).
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5

Multicolor Flow Cytometry Immunophenotyping

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Intestinal lamina propria cells and MLN cells were labeled with CD4-FITC, CD25-APC (eBioscience), CD8-APC-Cy7, CD3-PerCP (Biolegend), and B220-BV570 (BD Biosciences). Labeling of intracellular FoxP3 was performed after extracellular staining and fixation/permeabilization of cells. GM-CSF-derived dendritic cells were labeled with CD11b-PerCP Cy5.5 (BD Biosciences), CD11c-PE-Cy7, I-A/I-E-APC-Cy7, CD80-PE, CD86-APC, CD8-FITC, and B220-BV570 (Biolegend). Flt3L-derived dendritic cells were labeled with CD11c-PE-Cy7, CD11b- or Siglec-H-PerCP Cy5.5 (Biolegend), I-A/I-E-APC-Cy7, CD317-PE, CD40-Alexa Fluor 647, CD103-FITC, and B220-BV570. Coculture T cells were labeled with CD4-PerCP Cy5.5 (BD Biosciences), CD127-PE-Cy7, CD73-APC, CD195 (CCR5)-FITC, CD62L-BV570, and CD25-APC-Cy7 (Biolegend).
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6

Activation Kinetics of T Cell Subsets

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Cells were stained with Live/Dead Fixable Violet Dead Cell Stain Kit (Invitrogen), CD3-BV510, CCR7-PE, CD45RO-APC, CD4-PECy7, and CD27-BV785 (Biolegend). Activation levels were determined using CD25-APCCy7, CD69-APCCy7, and HLA-DR-APCCy7 (Biolegend). CFSE (Invitrogen) staining was done separately to prevent spillover. Stained cells were analyzed on the iQue Screener Plus (Intellicyt) at 4, 9, 14, and 21 days. Data was analyzed using FlowJo.
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7

Neonatal Lung Immune Cell Profiling

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Neonatal lung single‐cell suspensions were used for all immunostaining. Panels of monoclonal antibodies (purchased from BD Bioscience unless otherwise stated) were developed to enable phenotypic characterisation of leucocytes of myeloid: CD45‐PerCP (clone 30‐F11), CD11b‐v500 (clone M1/70), CD11c‐AF700 (clone HL3), CD19‐BV786 (clone 1D3), CD103‐PE (clone M290), CD301‐PE‐Cy7 (clone MGL1/MGL2; BioLegend), F4/80‐FITC (clone BM8; BioLegend, San Diego), Ly6G/C‐APC‐Cy7 (clone RB6‐8C5), I‐A/I‐E‐AF647 (clone M5/114.14.2) and B220/CD45R‐PE‐CF594 (clone RA3‐6B2) and lymphoid: CD45‐PerCP (clone 30‐F11), NKp46‐PE‐Cy7 (clone 29A1.4; BioLegend), CD19‐BV786 (clone 1D3), CD3‐FITC (clone 17A2), CD4‐v500 (clone RM4‐5), CD8α‐BV650 (clone 53‐6.7), CD25‐APC‐Cy7 (clone PC61) and Foxp3‐PE (clone FJK‐16s) lineages. Intracellular staining for Foxp3 was performed using an intracellular Foxp3/Transcription Factor Staining Buffer Kit (eBioscience, San Diego). All samples were kept as individuals. Immune cell phenotypic characterisation was performed using the FlowJo software (version 10.6.1; BD Bioscience). Fluorescent minus one staining controls were used for all panels where necessary. Flow cytometry data quality was based on primary time gates to ensure appropriate laser delay (pre‐determined by automated CS&T) during sample acquisition.
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8

Multicolor Flow Cytometry of PBMC

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We isolated peripheral blood mononuclear cells (PBMC) from peripheral blood by Ficoll gradient and we stored them in liquid nitrogen for batched analysis. For multicolor flow cytometry analyses, we used the following monoclonal antibodies: from Becton Dickinson (BD, Franklin Lakes, NJ), CD3-FITC, CD3-PerCP-Cy5.5, CD4-APC-Cy7, CD8-BV510, CD45RO-FITC, CD45RA-APC, CD45RA-APC-Cy7, CD71-PE, IgD-PerCP-Cy5.5, CD25-APC-Cy7, CD138-BV421, CCR4-PE, CD27-PE, CD95-BV421, CD28-BV421, TIM3-BV421, CCR6-BV421, CCR7-AF700, CXCR3-PE, IL-2-PE, IL-17-BV786, and IFN-γ-PE-Cy7; from Biolegend (San Diego, CA), CD19-BV510, CD56-FITC, CD27-APC, CD127-FITC, CD57-PerCp-Cy5.5, PD-1-APC-Cy7, CXCR5-FITC, LAG3-APC, IL-10-PerCP-Cy5.5, and TNF-α-FITC. From eBioscience (San Diego, CA), CD4-PE-Cy7, CD21-PE, and CD24-APC-Cy7 were used. From Miltenyi Biotec (Auburn, CA), CD25-APC and anti-KLRG1-PE were used. From Beckman Coulter (Indianapolis, IN), CD38-PE-Cy7 was used.
We performed intracellular staining for IL-2, IL-4, IL-17, IFN-g, and TNF-a together with extracellular markers for CD4+, CD8+, and CD19+. Cells were fixed and permeabilized using Intracellular Fixation and Permeabilization Buffer Set (eBioscience) according to the manufacturer’s instructions.
Data were acquired (> 1 × 106 events) on a 3-laser FACSLyric flow cytometer (BD Biosciences) and analyzed with FlowJo® software.
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9

Comprehensive Immune Cell Profiling

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Hoechst 33342 (Thermo; #R37165); Vybrant CFDA SE Cell Tracer (Thermo; #V12883); CellTrace CFSE Cell Proliferation Kit (Thermo; #C34553); Zombie UV (BioLegend; #423108); Zombie Violet (BioLegend; #423114); TruStain FcX (BioLegend; anti-mouse CD16/CD32; Clone 93; #101320); Annexin V-Pacific Blue (Thermo; #A35122); CD8α-BV650 (BioLegend; Clone 53-6.7; #100741); CD8α-PE (BioLegend; Clone 53-6.7; #100708); CD69-PE (BioLegend; Clone H1.2F3; #104508); CD25-APC-Cy7 (BioLegend; Clone PC61; #102026); IFNɣ-PE (BioLegend; Clone XMG1.2; #505808); TNFα-PE-Dazzle594 (BioLegend; Clone MP6-XT22; #506346); CD11b-APC (BioLegend; Clone M1/70; #101262); Gr-1-PE (BioLegend; Clone RB6-8C5; #108408); Ly6G-FITC (BioLegend; Clone 1A8; #127606); Ly6G-PE-Cy7 (BioLegend; Clone HK1.4; #128018); Ly6C-PerCP-Cy5.5 (BioLegend; Clone HK1.4; #128028); Ly6G-FITC (BioLegend; Clone 1A8; #127606); CD45-PerCP-Cy5.5 (BioLegend; Clone 30-F11; #103130); CD3-BV786 (BioLegend; Clone 17A2; 100232); CD3-BV421 (BioLegend; Clone 17A2; #100228), NK1.1-APC (BioLegend; Clone PK136; 108710); CD107a-BV421 (BioLegend; Clone 1D4B; #121618); Granzyme B-APC (Thermo; Clone NGZB; #17-8898-82).
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10

Tofacitinib Proliferation Assay Protocol

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Tofacitinib (Tofa, CP-690550, Selleck Chemical LLC, TX, USA) was dissolved in dimethylsulfoxide (DMSO) and then diluted in the culture medium at a final concentration of 10 (Tofa10) or 100 μM (Tofa100), so that the final concentration of DMSO would not exceed 1∶320 v/v. These concentrations were chosen on the basis of a previous work [7] (link) and did not induce unspecific cell toxicity, while permitting an effective reduction of proliferation.
Phytohaemagglutinin (PHA, Biochrom AG, Germany) was dissolved in water and then diluted 1∶200 in the culture medium at a final concentration of 1 μg/mL.
Oregon Green 488 carboxylic acid diacetate, succinimidyl ester (Carboxy-DFFDA, SE or CFSE, Invitrogen, Eugene, OR, USA) was dissolved at a concentration of 4.21 mM in DMSO and then used for proliferation assay at a final dye concentration of 5 μM.
7-aminoactinomycin D (7AAD) viability staining was from Immunostep (Salamanca, Spain).
All monoclonal antibodies for flow cytometric analysis were from Miltenyi Biotec (Bergisch Gladbach, Germany) except for CD25 APC-Cy7 (Biolegend, San Diego, CA, USA), HLA DR PE and CD19 FITC (Invitrogen, Carlsbad, CA, USA). 7AAD and monoclonal antibodies were used at concentrations indicated by the manufacturers.
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